Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47322 * 2 1 4 4 C 1.40360 * 126.64885 * 265.03023 * 3 2 1 5 5 C 1.35134 * 107.11573 * 179.97438 * 4 3 2 6 6 O 1.33925 * 108.76698 * 359.74964 * 5 4 3 7 7 C 1.34922 * 109.38335 * 0.41236 * 6 5 4 8 8 C 1.46656 * 125.98505 * 179.86160 * 7 6 5 9 9 O 1.21698 * 119.99725 * 179.68221 * 8 7 6 10 10 N 1.34780 * 120.00062 * 359.68832 * 8 7 6 11 11 C 1.46496 * 119.99734 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47552 * 324.99740 * 11 10 8 13 13 C 1.53008 * 109.47421 * 84.99427 * 11 10 8 14 14 C 1.52998 * 109.46930 * 204.99506 * 11 10 8 15 15 C 1.53504 * 114.20785 * 179.97438 * 14 11 10 16 16 N 1.47069 * 87.98363 * 220.34571 * 15 14 11 17 17 C 1.36941 * 136.05552 * 207.07801 * 16 15 14 18 18 H 1.08000 * 119.99396 * 7.56018 * 17 16 15 19 19 C 1.38806 * 119.99993 * 187.55101 * 17 16 15 20 20 N 1.31621 * 119.99759 * 174.37714 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 354.38427 * 19 17 16 22 22 H 1.48501 * 109.46963 * 174.94900 * 21 19 17 23 23 H 1.48498 * 109.47184 * 294.94894 * 21 19 17 24 24 H 1.48507 * 109.47082 * 54.95224 * 21 19 17 25 25 C 1.47064 * 87.88742 * 27.34488 * 16 15 14 26 26 H 1.09003 * 109.47165 * 59.99428 * 1 2 3 27 27 H 1.08998 * 109.47214 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46587 * 299.99829 * 1 2 3 29 29 H 1.09007 * 109.46972 * 240.00550 * 2 1 3 30 30 H 1.09001 * 109.47581 * 120.00251 * 2 1 3 31 31 H 1.08004 * 126.44423 * 359.97266 * 4 3 2 32 32 H 1.08001 * 125.61446 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00127 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.46240 * 60.00200 * 13 11 10 35 35 H 1.08991 * 109.47021 * 179.97438 * 13 11 10 36 36 H 1.08994 * 109.46942 * 300.00242 * 13 11 10 37 37 H 1.09002 * 113.41395 * 313.19707 * 14 11 10 38 38 H 1.08997 * 113.46758 * 105.56146 * 15 14 11 39 39 H 1.09000 * 113.51898 * 335.13170 * 15 14 11 40 40 H 0.96993 * 120.00423 * 354.88754 * 20 19 17 41 41 H 1.08993 * 113.47012 * 87.43421 * 25 16 15 42 42 H 1.09000 * 113.46758 * 217.87997 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4036 2.1782 -1.1219 5 6 2.7908 3.3922 -0.6718 6 8 2.6699 3.4159 0.6618 7 6 2.2140 2.2210 1.0914 8 6 1.9530 1.8489 2.4858 9 8 1.5353 0.7370 2.7509 10 7 2.1757 2.7384 3.4736 11 6 1.9156 2.3665 4.8665 12 1 1.0505 1.7050 4.9105 13 6 3.1380 1.6460 5.4389 14 6 1.6359 3.6271 5.6872 15 6 1.3470 3.3609 7.1711 16 7 0.2990 4.3901 7.0982 17 6 -0.2951 5.2564 7.9768 18 1 0.0907 5.3563 8.9806 19 6 -1.3928 6.0061 7.5771 20 7 -2.0317 6.7548 8.4510 21 14 -1.9634 5.9521 5.7993 22 1 -3.2165 6.7363 5.6576 23 1 -0.9138 6.5341 4.9247 24 1 -2.2135 4.5432 5.4022 25 6 0.1650 4.0749 5.6679 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3837 1.8521 -2.1513 32 1 3.1361 4.2101 -1.2867 33 1 2.5089 3.6245 3.2623 34 1 4.0031 2.3077 5.3950 35 1 2.9446 1.3698 6.4753 36 1 3.3372 0.7480 4.8542 37 1 2.3526 4.4285 5.5079 38 1 2.1736 3.6288 7.8291 39 1 0.9602 2.3607 7.3663 40 1 -1.7827 6.7263 9.3880 41 1 -0.5333 3.2628 5.4660 42 1 -0.0153 4.9513 5.0454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970369161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = 6.279188 kcal Electronic energy + Delta-G solvation = -23565.138224 eV Core-core repulsion = 20126.828638 eV Total energy + Delta-G solvation = -3438.309586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.66117 -41.10061 -39.93002 -36.64325 -35.70041 -34.54652 -32.55365 -32.06656 -30.19019 -29.45221 -27.09504 -25.73130 -24.98324 -23.82728 -22.70841 -21.76373 -21.42715 -20.51497 -19.57795 -19.05120 -17.60858 -17.32172 -17.17413 -16.95801 -15.98733 -15.89509 -15.59604 -15.32075 -15.17930 -14.92591 -14.65784 -14.37287 -13.96556 -13.69528 -13.56928 -13.35049 -13.27759 -13.25401 -13.12815 -12.56326 -12.39142 -12.27251 -12.15600 -11.94147 -11.74293 -11.35304 -11.12925 -11.09701 -10.87457 -10.67348 -10.21520 -9.54009 -9.25545 -8.64134 -5.50378 0.06749 1.34265 1.43815 1.44689 1.62838 1.72370 2.12450 2.23638 2.49677 2.95531 3.15364 3.42784 3.74445 3.79391 3.84001 3.92156 4.17202 4.34399 4.41525 4.41859 4.46401 4.52890 4.55289 4.63144 4.63857 4.66326 4.77671 4.83649 4.84847 4.98611 5.04804 5.07422 5.16775 5.27274 5.29928 5.34410 5.36426 5.44992 5.52237 5.90626 5.92702 6.47933 6.67495 7.05702 7.29857 8.24906 8.87664 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.004027 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.161264 B = 6950.823478 C = 7452.244310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.090 4.090 4 C -0.234 4.234 5 C 0.011 3.989 6 O -0.172 6.172 7 C -0.116 4.116 8 C 0.599 3.401 9 O -0.548 6.548 10 N -0.706 5.706 11 C 0.161 3.839 12 H 0.075 0.925 13 C -0.151 4.151 14 C -0.105 4.105 15 C 0.132 3.868 16 N -0.662 5.662 17 C -0.291 4.291 18 H 0.054 0.946 19 C -0.083 4.083 20 N -0.971 5.971 21 Si 1.106 2.894 22 H -0.303 1.303 23 H -0.268 1.268 24 H -0.270 1.270 25 C 0.092 3.908 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.253 0.747 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.247 0.753 41 H 0.044 0.956 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.126 -11.566 -23.272 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.252 4.252 5 C -0.058 4.058 6 O -0.068 6.068 7 C -0.167 4.167 8 C 0.387 3.613 9 O -0.428 6.428 10 N -0.356 5.356 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.209 4.209 14 C -0.124 4.124 15 C 0.007 3.993 16 N -0.391 5.391 17 C -0.419 4.419 18 H 0.072 0.928 19 C -0.275 4.275 20 N -0.617 5.617 21 Si 0.933 3.067 22 H -0.231 1.231 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.033 4.033 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.199 0.801 32 H 0.269 0.731 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.717 -11.315 -23.697 29.177 hybrid contribution 0.792 -0.043 1.710 1.885 sum 13.509 -11.358 -21.987 28.195 Atomic orbital electron populations 1.21602 0.94396 1.02282 1.01109 1.20142 0.96289 0.90117 1.03419 1.20965 0.98560 0.97992 0.91794 1.22076 1.07880 0.94535 1.00742 1.25305 0.99791 1.00880 0.79855 1.84064 1.65335 1.32772 1.24644 1.21717 1.13898 0.86482 0.94619 1.16747 0.77480 0.84552 0.82535 1.90827 1.47582 1.21603 1.82797 1.45943 1.66338 1.17118 1.06233 1.20869 0.99334 0.95100 0.79092 0.90648 1.22061 0.97085 1.00221 1.01582 1.23264 0.96075 0.97498 0.95596 1.22478 0.90676 0.91925 0.94257 1.46106 1.45794 1.40433 1.06720 1.20073 1.10260 1.17378 0.94177 0.92785 1.26956 0.94060 0.96877 1.09617 1.71004 1.43720 1.44171 1.02776 0.83278 0.75330 0.76732 0.71356 1.23096 1.19490 1.19562 1.23032 0.96447 0.97890 0.85898 0.91935 0.91221 0.94925 0.88823 0.91277 0.80115 0.73106 0.75081 0.90911 0.90469 0.92732 0.86627 0.92349 0.92980 0.94350 0.93826 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.01 16 2 C -0.06 -1.23 5.72 29.85 0.17 -1.06 16 3 C -0.09 -1.87 5.45 -19.74 -0.11 -1.98 16 4 C -0.23 -3.29 10.83 22.07 0.24 -3.05 16 5 C 0.01 0.13 12.08 67.10 0.81 0.94 16 6 O -0.17 -3.37 10.40 -5.07 -0.05 -3.42 16 7 C -0.12 -2.76 7.13 24.07 0.17 -2.59 16 8 C 0.60 16.50 7.75 86.44 0.67 17.17 16 9 O -0.55 -17.75 14.30 -4.34 -0.06 -17.81 16 10 N -0.71 -17.38 5.07 -446.52 -2.27 -19.65 16 11 C 0.16 4.25 2.47 44.99 0.11 4.36 16 12 H 0.08 2.31 7.32 -2.39 -0.02 2.29 16 13 C -0.15 -3.32 9.29 71.98 0.67 -2.65 16 14 C -0.10 -3.21 3.67 -10.37 -0.04 -3.25 16 15 C 0.13 4.84 7.33 83.18 0.61 5.45 16 16 N -0.66 -32.33 3.69 -737.86 -2.72 -35.05 16 17 C -0.29 -17.30 11.08 84.03 0.93 -16.37 16 18 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 19 C -0.08 -5.09 5.50 84.86 0.47 -4.63 16 20 N -0.97 -64.05 13.70 21.65 0.30 -63.75 16 21 Si 1.11 55.31 25.16 68.60 1.73 57.04 16 22 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 23 H -0.27 -12.18 6.51 99.48 0.65 -11.53 16 24 H -0.27 -12.56 6.21 99.48 0.62 -11.94 16 25 C 0.09 3.76 5.27 83.27 0.44 4.20 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 0.82 7.92 -2.38 -0.02 0.80 16 29 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.66 6.73 -2.39 -0.02 1.64 16 31 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.25 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.41 8.64 8.36 -92.71 -0.77 7.87 16 34 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.61 7.48 -2.39 -0.02 1.59 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 41 H 0.04 1.82 7.44 -2.39 -0.02 1.80 16 42 H 0.05 1.97 4.73 -2.39 -0.01 1.96 16 Total: -1.00 -77.18 343.60 2.84 -74.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.06 Total: 13.79 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.85 Total: -5.49 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -4.69 Total: -118.45 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.11 Total: -21.24 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.73 Total: 57.04 kcal Total: -77.18 2.84 -74.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970369161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.619 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds