Wall clock time and date at job start Tue Mar 31 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47664 * 2 1 4 4 C 1.40363 * 126.64717 * 265.02975 * 3 2 1 5 5 C 1.35131 * 107.11463 * 179.97438 * 4 3 2 6 6 O 1.33924 * 108.76588 * 359.75132 * 5 4 3 7 7 C 1.34917 * 109.38693 * 0.40310 * 6 5 4 8 8 C 1.46659 * 125.98761 * 179.85872 * 7 6 5 9 9 O 1.21697 * 119.99861 * 179.69037 * 8 7 6 10 10 N 1.34777 * 119.99770 * 359.69686 * 8 7 6 11 11 C 1.47417 * 125.65288 * 0.04923 * 10 8 7 12 12 C 1.54907 * 104.83381 * 204.08387 * 11 10 8 13 13 H 1.09000 * 111.03820 * 81.07970 * 12 11 10 14 14 N 1.46506 * 111.00623 * 204.91785 * 12 11 10 15 15 C 1.36938 * 119.99589 * 267.19769 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99408 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00325 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47397 * 90.00455 * 19 17 15 21 21 H 1.48510 * 109.46813 * 210.00284 * 19 17 15 22 22 H 1.48495 * 109.47179 * 329.99902 * 19 17 15 23 23 C 1.55156 * 101.58208 * 322.98934 * 12 11 10 24 24 C 1.47029 * 125.64334 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.88683 * 298.40580 * 24 10 8 26 26 C 1.53003 * 110.00800 * 59.49726 * 24 10 8 27 27 H 1.08996 * 109.47062 * 300.00651 * 1 2 3 28 28 H 1.09007 * 109.46478 * 60.00050 * 1 2 3 29 29 H 1.08998 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47137 * 239.99789 * 2 1 3 31 31 H 1.08998 * 109.46949 * 120.00237 * 2 1 3 32 32 H 1.07998 * 126.44009 * 359.97160 * 4 3 2 33 33 H 1.07999 * 125.61446 * 180.02562 * 5 4 3 34 34 H 1.09000 * 110.36715 * 85.24278 * 11 10 8 35 35 H 1.09000 * 110.36624 * 322.92580 * 11 10 8 36 36 H 0.96995 * 120.00050 * 86.91977 * 14 12 11 37 37 H 0.97000 * 119.99693 * 180.02562 * 18 17 15 38 38 H 1.08999 * 110.72233 * 153.86823 * 23 12 11 39 39 H 1.09002 * 110.72029 * 277.13726 * 23 12 11 40 40 H 1.09004 * 109.46714 * 177.87828 * 26 24 10 41 41 H 1.08990 * 109.47457 * 297.88233 * 26 24 10 42 42 H 1.09003 * 109.47008 * 57.89015 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.4038 2.1781 -1.1219 5 6 2.7910 3.3920 -0.6719 6 8 2.6701 3.4157 0.6617 7 6 2.2140 2.2209 1.0914 8 6 1.9531 1.8489 2.4858 9 8 1.5352 0.7371 2.7509 10 7 2.1759 2.7384 3.4735 11 6 2.6774 4.1131 3.2949 12 6 3.3309 4.4763 4.6516 13 1 4.3367 4.0627 4.7245 14 7 3.3466 5.9270 4.8553 15 6 4.4389 6.6600 4.4749 16 1 5.2890 6.1686 4.0251 17 6 4.4536 8.0346 4.6674 18 7 3.4178 8.6334 5.2160 19 14 5.9440 9.0344 4.1492 20 1 5.7748 9.4831 2.7438 21 1 6.0773 10.2194 5.0345 22 1 7.1647 8.1958 4.2576 23 6 2.3709 3.7842 5.6549 24 6 1.9575 2.4988 4.9076 25 1 0.9046 2.2851 5.0917 26 6 2.8168 1.3239 5.3789 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3839 1.8519 -2.1513 33 1 3.1364 4.2099 -1.2868 34 1 1.8531 4.7923 3.0769 35 1 3.4182 4.1458 2.4960 36 1 2.5816 6.3688 5.2559 37 1 3.4280 9.5940 5.3502 38 1 2.8910 3.5415 6.5816 39 1 1.5017 4.4116 5.8524 40 1 2.6768 1.1781 6.4500 41 1 2.5197 0.4201 4.8472 42 1 3.8663 1.5368 5.1755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989413542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:59 Heat of formation + Delta-G solvation = -11.938216 kcal Electronic energy + Delta-G solvation = -23996.432022 eV Core-core repulsion = 20557.332470 eV Total energy + Delta-G solvation = -3439.099551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.66957 -39.76307 -37.49434 -34.97615 -34.15703 -32.01478 -31.37765 -31.17122 -29.16977 -28.32007 -25.48477 -24.51504 -23.76152 -22.86800 -21.67367 -20.69528 -19.77860 -18.98216 -17.39488 -17.34351 -16.39689 -16.17690 -15.43072 -15.30020 -14.48030 -14.42395 -14.13651 -13.73728 -13.47240 -13.27062 -13.14178 -12.99198 -12.96428 -12.55914 -12.41953 -12.34857 -11.88703 -11.83575 -11.35955 -11.22028 -11.01492 -10.94486 -10.73907 -10.65108 -10.27906 -10.02551 -9.89642 -9.77011 -9.71164 -9.04320 -8.69539 -8.29328 -7.11442 -5.87187 -3.18004 1.15318 2.35436 2.76550 3.29213 3.31388 3.37860 3.43828 3.45070 4.47946 4.62083 4.70842 4.77490 5.05150 5.12868 5.23975 5.26880 5.37683 5.42666 5.46149 5.58127 5.58708 5.64452 5.67875 5.83728 5.86402 5.89075 5.94757 6.09338 6.18743 6.21310 6.24798 6.26862 6.27908 6.37291 6.45660 6.54514 6.63139 6.83068 6.98122 7.61431 7.70778 8.23712 8.30577 9.42306 9.95541 10.30773 11.34813 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.004540 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.467655 B = 6165.716023 C = 7387.556321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.093 4.093 4 C -0.228 4.228 5 C -0.007 4.007 6 O -0.150 6.150 7 C -0.072 4.072 8 C 0.612 3.388 9 O -0.530 6.530 10 N -0.599 5.599 11 C 0.072 3.928 12 C 0.174 3.826 13 H 0.068 0.932 14 N -0.711 5.711 15 C -0.249 4.249 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.138 4.138 24 C 0.140 3.860 25 H 0.072 0.928 26 C -0.161 4.161 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.207 0.793 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -14.443 -8.840 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.096 4.096 4 C -0.247 4.247 5 C -0.078 4.078 6 O -0.045 6.045 7 C -0.124 4.124 8 C 0.400 3.600 9 O -0.410 6.410 10 N -0.331 5.331 11 C -0.053 4.053 12 C 0.062 3.938 13 H 0.086 0.914 14 N -0.350 5.350 15 C -0.379 4.379 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.177 4.177 24 C 0.037 3.963 25 H 0.090 0.910 26 C -0.219 4.219 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.601 -14.710 -8.541 17.386 hybrid contribution 0.552 0.972 -0.616 1.276 sum -3.049 -13.738 -9.156 16.789 Atomic orbital electron populations 1.21629 0.94587 1.01524 1.01863 1.20083 0.96184 0.90322 1.03088 1.20552 1.00383 0.97647 0.91040 1.21667 1.08410 0.94641 0.99964 1.24419 1.02056 0.99901 0.81379 1.84307 1.64423 1.33170 1.22561 1.21888 1.10378 0.85269 0.94844 1.16215 0.78462 0.83940 0.81347 1.90793 1.47789 1.20322 1.82078 1.48521 1.63529 1.14691 1.06407 1.23652 0.99015 0.79980 1.02675 1.21286 0.96244 0.86337 0.89966 0.91405 1.42319 1.19803 0.99969 1.72916 1.19258 0.95189 0.89537 1.33960 0.90962 1.24760 0.97827 0.96638 1.01179 1.69658 1.29790 1.09497 1.48741 0.86188 0.82170 0.79886 0.77913 1.21596 1.21687 1.20634 1.23050 1.00803 0.94886 0.99001 1.21543 0.99420 0.96032 0.79348 0.90952 1.22142 1.00102 0.98582 1.01099 0.92248 0.93214 0.92483 0.91402 0.89361 0.83015 0.77600 0.91194 0.90447 0.77835 0.93320 0.89977 0.90499 0.91756 0.91393 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.90 37.16 0.37 -1.20 16 2 C -0.06 -0.72 5.72 -27.88 -0.16 -0.88 16 3 C -0.09 -1.27 5.45 -104.44 -0.57 -1.84 16 4 C -0.23 -2.60 10.83 -39.89 -0.43 -3.03 16 5 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 6 O -0.15 -2.30 7.86 5.00 0.04 -2.26 16 7 C -0.07 -1.13 6.93 -36.80 -0.25 -1.39 16 8 C 0.61 10.38 7.60 -12.86 -0.10 10.28 16 9 O -0.53 -9.40 13.55 5.19 0.07 -9.33 16 10 N -0.60 -9.96 3.08 -164.55 -0.51 -10.47 16 11 C 0.07 1.30 5.86 -2.53 -0.01 1.29 16 12 C 0.17 3.31 3.71 -65.78 -0.24 3.07 16 13 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 14 N -0.71 -16.85 5.24 -51.35 -0.27 -17.12 16 15 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 19 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.14 -2.18 6.14 -24.90 -0.15 -2.33 16 24 C 0.14 2.10 3.49 -66.95 -0.23 1.86 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 C -0.16 -2.20 9.06 37.16 0.34 -1.86 16 27 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.09 1.20 6.73 -51.93 -0.35 0.85 16 32 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.21 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.44 6.23 -51.93 -0.32 1.11 16 36 H 0.39 9.74 7.77 -40.82 -0.32 9.43 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.08 1.20 7.83 -51.93 -0.41 0.79 16 39 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.99 6.77 -51.93 -0.35 0.64 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -30.12 344.47 -7.46 -37.58 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.35 Total: 8.90 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.34 Total: -2.79 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.05 Total: -53.88 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.11 Total: -11.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.12 -7.46 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989413542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.641 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds