Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47664 * 2 1 4 4 C 1.40363 * 126.64717 * 265.02975 * 3 2 1 5 5 C 1.35131 * 107.11463 * 179.97438 * 4 3 2 6 6 O 1.33924 * 108.76588 * 359.75132 * 5 4 3 7 7 C 1.34917 * 109.38693 * 0.40310 * 6 5 4 8 8 C 1.46659 * 125.98761 * 179.85872 * 7 6 5 9 9 O 1.21697 * 119.99861 * 179.69037 * 8 7 6 10 10 N 1.34777 * 119.99770 * 359.69686 * 8 7 6 11 11 C 1.47417 * 125.65288 * 0.04923 * 10 8 7 12 12 C 1.54907 * 104.83381 * 204.08387 * 11 10 8 13 13 H 1.09000 * 111.03820 * 81.07970 * 12 11 10 14 14 N 1.46506 * 111.00623 * 204.91785 * 12 11 10 15 15 C 1.36938 * 119.99589 * 267.19769 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99408 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00325 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99550 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47397 * 90.00455 * 19 17 15 21 21 H 1.48510 * 109.46813 * 210.00284 * 19 17 15 22 22 H 1.48495 * 109.47179 * 329.99902 * 19 17 15 23 23 C 1.55156 * 101.58208 * 322.98934 * 12 11 10 24 24 C 1.47029 * 125.64334 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.88683 * 298.40580 * 24 10 8 26 26 C 1.53003 * 110.00800 * 59.49726 * 24 10 8 27 27 H 1.08996 * 109.47062 * 300.00651 * 1 2 3 28 28 H 1.09007 * 109.46478 * 60.00050 * 1 2 3 29 29 H 1.08998 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47137 * 239.99789 * 2 1 3 31 31 H 1.08998 * 109.46949 * 120.00237 * 2 1 3 32 32 H 1.07998 * 126.44009 * 359.97160 * 4 3 2 33 33 H 1.07999 * 125.61446 * 180.02562 * 5 4 3 34 34 H 1.09000 * 110.36715 * 85.24278 * 11 10 8 35 35 H 1.09000 * 110.36624 * 322.92580 * 11 10 8 36 36 H 0.96995 * 120.00050 * 86.91977 * 14 12 11 37 37 H 0.97000 * 119.99693 * 180.02562 * 18 17 15 38 38 H 1.08999 * 110.72233 * 153.86823 * 23 12 11 39 39 H 1.09002 * 110.72029 * 277.13726 * 23 12 11 40 40 H 1.09004 * 109.46714 * 177.87828 * 26 24 10 41 41 H 1.08990 * 109.47457 * 297.88233 * 26 24 10 42 42 H 1.09003 * 109.47008 * 57.89015 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.4038 2.1781 -1.1219 5 6 2.7910 3.3920 -0.6719 6 8 2.6701 3.4157 0.6617 7 6 2.2140 2.2209 1.0914 8 6 1.9531 1.8489 2.4858 9 8 1.5352 0.7371 2.7509 10 7 2.1759 2.7384 3.4735 11 6 2.6774 4.1131 3.2949 12 6 3.3309 4.4763 4.6516 13 1 4.3367 4.0627 4.7245 14 7 3.3466 5.9270 4.8553 15 6 4.4389 6.6600 4.4749 16 1 5.2890 6.1686 4.0251 17 6 4.4536 8.0346 4.6674 18 7 3.4178 8.6334 5.2160 19 14 5.9440 9.0344 4.1492 20 1 5.7748 9.4831 2.7438 21 1 6.0773 10.2194 5.0345 22 1 7.1647 8.1958 4.2576 23 6 2.3709 3.7842 5.6549 24 6 1.9575 2.4988 4.9076 25 1 0.9046 2.2851 5.0917 26 6 2.8168 1.3239 5.3789 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3839 1.8519 -2.1513 33 1 3.1364 4.2099 -1.2868 34 1 1.8531 4.7923 3.0769 35 1 3.4182 4.1458 2.4960 36 1 2.5816 6.3688 5.2559 37 1 3.4280 9.5940 5.3502 38 1 2.8910 3.5415 6.5816 39 1 1.5017 4.4116 5.8524 40 1 2.6768 1.1781 6.4500 41 1 2.5197 0.4201 4.8472 42 1 3.8663 1.5368 5.1755 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989413542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -29.776752 kcal Electronic energy + Delta-G solvation = -23997.205558 eV Core-core repulsion = 20557.332470 eV Total energy + Delta-G solvation = -3439.873088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.70509 -41.08505 -38.86959 -36.19268 -35.75152 -33.38752 -33.02836 -32.18385 -30.29526 -29.92004 -26.79551 -25.98389 -25.23935 -24.02226 -22.75425 -22.09052 -21.02439 -20.15528 -19.31760 -18.58828 -17.56072 -17.34724 -16.82393 -16.65261 -16.14083 -15.54623 -15.42943 -15.11563 -14.72602 -14.70783 -14.60358 -14.27618 -14.01944 -13.90105 -13.52646 -13.32403 -13.22704 -13.08705 -13.00175 -12.80304 -12.31140 -12.23534 -12.17836 -12.08134 -11.90994 -11.73096 -11.48290 -11.15444 -10.93628 -10.68901 -9.90602 -9.49524 -9.07089 -7.95420 -5.25829 0.04463 1.41394 1.50196 1.50557 1.59143 1.65746 2.08114 2.12455 2.56643 3.34856 3.38580 3.75898 3.78674 3.82775 3.87548 3.95934 4.08884 4.30048 4.40006 4.43074 4.44879 4.47938 4.50118 4.59422 4.69782 4.79407 4.81504 4.89204 4.98983 5.04460 5.05827 5.12211 5.22107 5.28328 5.30555 5.34014 5.41397 5.49558 5.53147 5.95794 6.25137 6.37716 6.95945 7.33132 8.02988 8.28437 9.27398 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.004540 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.467655 B = 6165.716023 C = 7387.556321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.088 4.088 4 C -0.227 4.227 5 C -0.002 4.002 6 O -0.175 6.175 7 C -0.116 4.116 8 C 0.608 3.392 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.091 3.909 12 C 0.169 3.831 13 H 0.066 0.934 14 N -0.721 5.721 15 C -0.246 4.246 16 H 0.077 0.923 17 C -0.066 4.066 18 N -0.966 5.966 19 Si 0.970 3.030 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.125 4.125 24 C 0.138 3.862 25 H 0.078 0.922 26 C -0.152 4.152 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.244 0.756 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 -15.521 -10.421 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.091 4.091 4 C -0.245 4.245 5 C -0.071 4.071 6 O -0.070 6.070 7 C -0.167 4.167 8 C 0.398 3.602 9 O -0.426 6.426 10 N -0.335 5.335 11 C -0.035 4.035 12 C 0.058 3.942 13 H 0.084 0.916 14 N -0.360 5.360 15 C -0.378 4.378 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.616 5.616 19 Si 0.799 3.201 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.194 1.194 23 C -0.164 4.164 24 C 0.035 3.965 25 H 0.096 0.904 26 C -0.210 4.210 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.210 0.790 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.993 -15.850 -10.132 19.049 hybrid contribution 0.340 1.211 -0.227 1.278 sum -2.654 -14.639 -10.359 18.129 Atomic orbital electron populations 1.21585 0.94033 1.02417 1.01069 1.20149 0.96593 0.89533 1.03471 1.20968 0.98735 0.98143 0.91256 1.22050 1.07599 0.94018 1.00844 1.25302 1.00339 1.01205 0.80271 1.84267 1.65095 1.33231 1.24445 1.21817 1.13701 0.86423 0.94803 1.16451 0.78018 0.83721 0.82026 1.90769 1.48502 1.20693 1.82588 1.48524 1.63799 1.14015 1.07159 1.23196 0.98058 0.80635 1.01568 1.21410 0.97071 0.84152 0.91532 0.91644 1.42421 1.18848 1.01714 1.73015 1.19609 0.95754 0.89946 1.32442 0.90502 1.25506 1.00436 0.97799 1.02184 1.69804 1.31739 1.09281 1.50757 0.85202 0.79541 0.78177 0.77202 1.21368 1.22337 1.19424 1.22955 0.99924 0.94676 0.98860 1.21650 1.00142 0.96127 0.78539 0.90362 1.22073 0.99261 0.97197 1.02495 0.94957 0.91983 0.90796 0.88624 0.91294 0.79664 0.74002 0.92866 0.91121 0.78973 0.93916 0.88313 0.90698 0.89237 0.92483 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.90 71.98 0.71 -2.13 16 2 C -0.06 -1.36 5.72 29.85 0.17 -1.19 16 3 C -0.09 -2.29 5.45 -19.74 -0.11 -2.40 16 4 C -0.23 -4.54 10.83 22.07 0.24 -4.30 16 5 C 0.00 -0.04 12.08 67.10 0.81 0.77 16 6 O -0.17 -5.27 7.86 -5.01 -0.04 -5.31 16 7 C -0.12 -3.67 6.93 24.07 0.17 -3.50 16 8 C 0.61 20.92 7.60 86.44 0.66 21.57 16 9 O -0.54 -19.59 13.55 -4.34 -0.06 -19.64 16 10 N -0.60 -20.23 3.08 -792.73 -2.44 -22.67 16 11 C 0.09 3.34 5.86 86.86 0.51 3.85 16 12 C 0.17 6.44 3.71 46.38 0.17 6.62 16 13 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 14 N -0.72 -34.57 5.24 -316.37 -1.66 -36.23 16 15 C -0.25 -13.04 9.96 84.03 0.84 -12.20 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 18 N -0.97 -57.05 13.06 21.65 0.28 -56.77 16 19 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 C -0.13 -3.87 6.14 31.78 0.20 -3.68 16 24 C 0.14 4.07 3.49 45.34 0.16 4.23 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 C -0.15 -3.98 9.06 71.98 0.65 -3.33 16 27 H 0.03 0.85 7.92 -2.39 -0.02 0.83 16 28 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.84 6.73 -2.39 -0.02 1.83 16 32 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.24 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.67 6.23 -2.39 -0.01 2.66 16 36 H 0.38 19.40 7.77 -92.71 -0.72 18.68 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.10 2.72 7.83 -2.39 -0.02 2.70 16 39 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 40 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 1.63 6.77 -2.39 -0.02 1.61 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.71 344.47 4.05 -61.66 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.30 Total: 31.35 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.64 Total: 1.12 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -3.82 Total: -115.67 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.10 Total: -24.96 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.71 4.05 -61.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989413542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.882 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds