Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47050 * 2 1 4 4 C 1.40373 * 126.64519 * 265.15739 * 3 2 1 5 5 C 1.35127 * 107.11413 * 180.22484 * 4 3 2 6 6 O 1.33936 * 108.76730 * 359.78325 * 5 4 3 7 7 C 1.34910 * 109.38274 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98793 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00538 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99798 * 0.02741 * 8 7 6 11 11 C 1.47422 * 125.64734 * 0.05314 * 10 8 7 12 12 C 1.54906 * 104.83284 * 204.08173 * 11 10 8 13 13 H 1.09000 * 111.03945 * 204.89940 * 12 11 10 14 14 N 1.46504 * 111.00538 * 81.06220 * 12 11 10 15 15 C 1.36943 * 119.99781 * 92.80655 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31622 * 119.99400 * 179.72313 * 17 15 14 19 19 Si 1.86800 * 120.00144 * 359.72086 * 17 15 14 20 20 H 1.48506 * 109.46719 * 90.00417 * 19 17 15 21 21 H 1.48501 * 109.46793 * 210.00071 * 19 17 15 22 22 H 1.48489 * 109.47333 * 330.00315 * 19 17 15 23 23 C 1.55153 * 101.58297 * 322.99022 * 12 11 10 24 24 C 1.47023 * 125.64936 * 179.97438 * 10 8 7 25 25 H 1.08997 * 109.88266 * 59.56524 * 24 10 8 26 26 C 1.53003 * 110.00953 * 298.47391 * 24 10 8 27 27 H 1.09007 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46529 * 299.99492 * 1 2 3 29 29 H 1.08994 * 109.47816 * 59.99834 * 1 2 3 30 30 H 1.09000 * 109.46775 * 239.99872 * 2 1 3 31 31 H 1.09000 * 109.47224 * 120.00525 * 2 1 3 32 32 H 1.07999 * 126.44040 * 0.02562 * 4 3 2 33 33 H 1.08001 * 125.62057 * 179.77758 * 5 4 3 34 34 H 1.09006 * 110.36998 * 85.24224 * 11 10 8 35 35 H 1.09005 * 110.37180 * 322.92034 * 11 10 8 36 36 H 0.97000 * 120.00410 * 272.80980 * 14 12 11 37 37 H 0.97009 * 119.99492 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.72723 * 153.86049 * 23 12 11 39 39 H 1.09000 * 110.72556 * 277.13946 * 23 12 11 40 40 H 1.08999 * 109.47244 * 302.11457 * 26 24 10 41 41 H 1.09004 * 109.46704 * 62.11492 * 26 24 10 42 42 H 1.09000 * 109.46938 * 182.11142 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4012 2.1790 -1.1223 5 6 2.7945 3.3907 -0.6717 6 8 2.6803 3.4121 0.6626 7 6 2.2136 2.2211 1.0913 8 6 1.9531 1.8489 2.4857 9 8 1.5308 0.7387 2.7505 10 7 2.1815 2.7364 3.4740 11 6 2.6889 4.1090 3.2959 12 6 3.3462 4.4680 4.6518 13 1 3.3636 5.5470 4.8048 14 7 4.6956 3.9053 4.7466 15 6 5.7776 4.6535 4.3663 16 1 5.6362 5.6582 3.9961 17 6 7.0556 4.1183 4.4506 18 7 8.0952 4.8355 4.0800 19 14 7.3001 2.3803 5.0902 20 1 7.2429 1.4230 3.9563 21 1 8.6233 2.2797 5.7567 22 1 6.2285 2.0566 6.0659 23 6 2.3848 3.7793 5.6561 24 6 1.9644 2.4965 4.9082 25 1 2.5751 1.6569 5.2403 26 6 0.4865 2.2009 5.1717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3783 1.8538 -2.1519 33 1 3.1435 4.2074 -1.2862 34 1 1.8674 4.7922 3.0799 35 1 3.4287 4.1393 2.4959 36 1 4.8225 3.0028 5.0787 37 1 8.9883 4.4616 4.1393 38 1 2.9053 3.5332 6.5817 39 1 1.5187 4.4103 5.8556 40 1 -0.1193 3.0364 4.8210 41 1 0.1971 1.2940 4.6406 42 1 0.3289 2.0615 6.2412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989413544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = -7.689941 kcal Electronic energy + Delta-G solvation = -24465.773921 eV Core-core repulsion = 21026.858589 eV Total energy + Delta-G solvation = -3438.915332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -42.59673 -39.77564 -37.54462 -34.92514 -34.07847 -31.98312 -31.50734 -31.14909 -29.19513 -28.88209 -25.60067 -24.41395 -23.47772 -22.87831 -21.66127 -20.62182 -19.83275 -18.91228 -17.74166 -17.23852 -16.44212 -16.21071 -15.76713 -14.92316 -14.49340 -14.40972 -14.10473 -13.81928 -13.74713 -13.29046 -13.09281 -12.99542 -12.73246 -12.52842 -12.33294 -12.32570 -12.03153 -11.93250 -11.45481 -11.31510 -11.07544 -10.90424 -10.84551 -10.67277 -10.38605 -10.10489 -9.82606 -9.65660 -9.64642 -9.09514 -8.63352 -8.25818 -7.35850 -5.84461 -3.21080 1.22613 2.42627 2.82286 3.33560 3.34413 3.38404 3.38824 3.43045 4.53675 4.62173 4.76615 4.82204 4.98926 5.05768 5.12933 5.28359 5.31896 5.42721 5.46884 5.48160 5.55465 5.65862 5.70572 5.72669 5.75218 5.88596 5.96503 6.00392 6.04366 6.17096 6.25270 6.26333 6.31285 6.33966 6.43504 6.49911 6.53291 6.71924 7.03793 7.73438 7.90055 8.29200 8.34622 9.11544 9.84455 10.02925 11.33263 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.005854 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.068091 B = 4781.877594 C = 5565.884802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.094 4.094 4 C -0.227 4.227 5 C -0.007 4.007 6 O -0.150 6.150 7 C -0.068 4.068 8 C 0.614 3.386 9 O -0.530 6.530 10 N -0.593 5.593 11 C 0.069 3.931 12 C 0.174 3.826 13 H 0.085 0.915 14 N -0.736 5.736 15 C -0.250 4.250 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.930 5.930 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.142 4.142 24 C 0.136 3.864 25 H 0.073 0.927 26 C -0.159 4.159 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.207 0.793 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.363 0.637 37 H 0.260 0.740 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.102 -4.129 -6.328 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.097 4.097 4 C -0.246 4.246 5 C -0.078 4.078 6 O -0.045 6.045 7 C -0.121 4.121 8 C 0.403 3.597 9 O -0.410 6.410 10 N -0.325 5.325 11 C -0.057 4.057 12 C 0.063 3.937 13 H 0.102 0.898 14 N -0.377 5.377 15 C -0.379 4.379 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.576 5.576 19 Si 0.710 3.290 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.181 4.181 24 C 0.034 3.966 25 H 0.091 0.909 26 C -0.217 4.217 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.075 -4.322 -6.076 17.720 hybrid contribution 0.500 -1.193 -0.004 1.293 sum -15.575 -5.515 -6.080 17.606 Atomic orbital electron populations 1.21619 0.94648 1.01465 1.01719 1.20081 0.96098 0.90405 1.03175 1.20541 1.00552 0.97511 0.91103 1.21653 1.08427 0.94600 0.99933 1.24387 1.01997 1.00078 0.81306 1.84269 1.64110 1.33588 1.22502 1.21831 1.09927 0.85550 0.94750 1.16172 0.78367 0.83796 0.81385 1.90792 1.47787 1.20308 1.82112 1.48364 1.63104 1.14764 1.06236 1.23521 0.98003 0.81009 1.03163 1.21304 0.84636 0.97542 0.90255 0.89765 1.42694 1.01291 1.15559 1.78156 1.19061 0.84242 0.98174 1.36442 0.88911 1.24639 0.95434 0.97542 1.00917 1.69697 0.98117 1.36669 1.53162 0.86624 0.77196 0.86166 0.78995 1.21079 1.21568 1.20296 1.23138 0.99974 0.95696 0.99269 1.21544 0.96434 0.98699 0.79967 0.90878 1.22131 0.95440 1.02496 1.01677 0.92540 0.92333 0.93245 0.91368 0.89376 0.83043 0.77602 0.92173 0.88953 0.80447 0.92959 0.89689 0.90200 0.92640 0.91453 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.06 -0.80 5.72 -27.89 -0.16 -0.96 16 3 C -0.09 -1.40 5.45 -104.43 -0.57 -1.97 16 4 C -0.23 -2.82 10.83 -39.89 -0.43 -3.25 16 5 C -0.01 -0.09 12.08 29.63 0.36 0.27 16 6 O -0.15 -2.39 7.86 4.99 0.04 -2.35 16 7 C -0.07 -1.16 6.93 -36.80 -0.25 -1.41 16 8 C 0.61 11.11 7.61 -12.86 -0.10 11.02 16 9 O -0.53 -10.09 13.67 5.20 0.07 -10.02 16 10 N -0.59 -10.18 3.07 -164.54 -0.51 -10.69 16 11 C 0.07 1.16 5.86 -2.53 -0.01 1.15 16 12 C 0.17 3.10 3.72 -65.78 -0.24 2.86 16 13 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 14 N -0.74 -16.70 5.04 -51.35 -0.26 -16.96 16 15 C -0.25 -6.76 10.44 -15.06 -0.16 -6.92 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 18 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 19 Si 0.88 22.24 27.73 -169.99 -4.71 17.52 16 20 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 23 C -0.14 -2.04 6.07 -24.90 -0.15 -2.19 16 24 C 0.14 2.10 3.45 -66.95 -0.23 1.87 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 C -0.16 -2.08 9.10 37.16 0.34 -1.74 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.79 7.91 -51.93 -0.41 0.38 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.34 6.73 -51.93 -0.35 0.99 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.21 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.79 6.22 -51.93 -0.32 1.47 16 36 H 0.36 8.40 5.73 -40.82 -0.23 8.17 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 0.94 7.85 -51.93 -0.41 0.54 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.98 6.90 -51.93 -0.36 0.62 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -32.23 341.79 -7.11 -39.34 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.32 Total: 8.16 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.34 Total: -2.30 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.01 Total: -55.49 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.11 Total: -12.37 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -7.11 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989413544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds