Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47050 * 2 1 4 4 C 1.40373 * 126.64519 * 265.15739 * 3 2 1 5 5 C 1.35127 * 107.11413 * 180.22484 * 4 3 2 6 6 O 1.33936 * 108.76730 * 359.78325 * 5 4 3 7 7 C 1.34910 * 109.38274 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98793 * 179.97438 * 7 6 5 9 9 O 1.21693 * 120.00538 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99798 * 0.02741 * 8 7 6 11 11 C 1.47422 * 125.64734 * 0.05314 * 10 8 7 12 12 C 1.54906 * 104.83284 * 204.08173 * 11 10 8 13 13 H 1.09000 * 111.03945 * 204.89940 * 12 11 10 14 14 N 1.46504 * 111.00538 * 81.06220 * 12 11 10 15 15 C 1.36943 * 119.99781 * 92.80655 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31622 * 119.99400 * 179.72313 * 17 15 14 19 19 Si 1.86800 * 120.00144 * 359.72086 * 17 15 14 20 20 H 1.48506 * 109.46719 * 90.00417 * 19 17 15 21 21 H 1.48501 * 109.46793 * 210.00071 * 19 17 15 22 22 H 1.48489 * 109.47333 * 330.00315 * 19 17 15 23 23 C 1.55153 * 101.58297 * 322.99022 * 12 11 10 24 24 C 1.47023 * 125.64936 * 179.97438 * 10 8 7 25 25 H 1.08997 * 109.88266 * 59.56524 * 24 10 8 26 26 C 1.53003 * 110.00953 * 298.47391 * 24 10 8 27 27 H 1.09007 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46529 * 299.99492 * 1 2 3 29 29 H 1.08994 * 109.47816 * 59.99834 * 1 2 3 30 30 H 1.09000 * 109.46775 * 239.99872 * 2 1 3 31 31 H 1.09000 * 109.47224 * 120.00525 * 2 1 3 32 32 H 1.07999 * 126.44040 * 0.02562 * 4 3 2 33 33 H 1.08001 * 125.62057 * 179.77758 * 5 4 3 34 34 H 1.09006 * 110.36998 * 85.24224 * 11 10 8 35 35 H 1.09005 * 110.37180 * 322.92034 * 11 10 8 36 36 H 0.97000 * 120.00410 * 272.80980 * 14 12 11 37 37 H 0.97009 * 119.99492 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.72723 * 153.86049 * 23 12 11 39 39 H 1.09000 * 110.72556 * 277.13946 * 23 12 11 40 40 H 1.08999 * 109.47244 * 302.11457 * 26 24 10 41 41 H 1.09004 * 109.46704 * 62.11492 * 26 24 10 42 42 H 1.09000 * 109.46938 * 182.11142 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4012 2.1790 -1.1223 5 6 2.7945 3.3907 -0.6717 6 8 2.6803 3.4121 0.6626 7 6 2.2136 2.2211 1.0913 8 6 1.9531 1.8489 2.4857 9 8 1.5308 0.7387 2.7505 10 7 2.1815 2.7364 3.4740 11 6 2.6889 4.1090 3.2959 12 6 3.3462 4.4680 4.6518 13 1 3.3636 5.5470 4.8048 14 7 4.6956 3.9053 4.7466 15 6 5.7776 4.6535 4.3663 16 1 5.6362 5.6582 3.9961 17 6 7.0556 4.1183 4.4506 18 7 8.0952 4.8355 4.0800 19 14 7.3001 2.3803 5.0902 20 1 7.2429 1.4230 3.9563 21 1 8.6233 2.2797 5.7567 22 1 6.2285 2.0566 6.0659 23 6 2.3848 3.7793 5.6561 24 6 1.9644 2.4965 4.9082 25 1 2.5751 1.6569 5.2403 26 6 0.4865 2.2009 5.1717 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.3783 1.8538 -2.1519 33 1 3.1435 4.2074 -1.2862 34 1 1.8674 4.7922 3.0799 35 1 3.4287 4.1393 2.4959 36 1 4.8225 3.0028 5.0787 37 1 8.9883 4.4616 4.1393 38 1 2.9053 3.5332 6.5817 39 1 1.5187 4.4103 5.8556 40 1 -0.1193 3.0364 4.8210 41 1 0.1971 1.2940 4.6406 42 1 0.3289 2.0615 6.2412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989413544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -28.249600 kcal Electronic energy + Delta-G solvation = -24466.665455 eV Core-core repulsion = 21026.858589 eV Total energy + Delta-G solvation = -3439.806866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -43.69013 -41.08860 -38.92278 -36.16668 -35.72164 -33.50164 -33.10306 -32.18670 -30.67167 -30.13592 -26.82004 -25.67600 -25.22015 -24.06748 -22.76189 -21.99850 -21.09028 -20.10981 -19.76305 -18.47455 -17.77034 -17.37523 -17.00856 -16.43645 -16.05919 -15.80599 -15.45478 -15.18655 -14.83791 -14.73565 -14.51650 -14.28519 -14.04199 -13.70818 -13.64365 -13.44579 -13.30907 -13.23499 -13.04507 -12.79712 -12.36278 -12.28873 -12.15596 -12.02342 -11.93394 -11.80698 -11.54586 -11.16277 -11.03526 -10.69050 -9.92063 -9.53779 -9.25228 -8.05046 -5.37170 0.05780 1.31346 1.34721 1.39817 1.41514 1.68063 2.10748 2.16327 2.43439 3.25123 3.43163 3.54586 3.75215 3.79699 3.81922 3.88022 4.05254 4.31366 4.37923 4.41539 4.43829 4.48838 4.59583 4.63463 4.68468 4.76844 4.80847 4.90900 5.02452 5.03960 5.05436 5.13925 5.15722 5.26986 5.29051 5.32310 5.41525 5.51328 5.76967 5.95790 6.19622 6.41102 6.98152 7.04535 7.80897 7.97630 9.16038 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.005854 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.068091 B = 4781.877594 C = 5565.884802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.094 4.094 4 C -0.229 4.229 5 C -0.001 4.001 6 O -0.170 6.170 7 C -0.113 4.113 8 C 0.604 3.396 9 O -0.551 6.551 10 N -0.598 5.598 11 C 0.080 3.920 12 C 0.162 3.838 13 H 0.092 0.908 14 N -0.741 5.741 15 C -0.222 4.222 16 H 0.071 0.929 17 C -0.054 4.054 18 N -0.978 5.978 19 Si 0.937 3.063 20 H -0.294 1.294 21 H -0.293 1.293 22 H -0.254 1.254 23 C -0.124 4.124 24 C 0.129 3.871 25 H 0.053 0.947 26 C -0.148 4.148 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.185 0.815 33 H 0.247 0.753 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.361 0.639 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -4.373 -6.798 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 C -0.097 4.097 4 C -0.248 4.248 5 C -0.071 4.071 6 O -0.065 6.065 7 C -0.164 4.164 8 C 0.395 3.605 9 O -0.433 6.433 10 N -0.330 5.330 11 C -0.045 4.045 12 C 0.052 3.948 13 H 0.110 0.890 14 N -0.383 5.383 15 C -0.353 4.353 16 H 0.089 0.911 17 C -0.246 4.246 18 N -0.628 5.628 19 Si 0.766 3.234 20 H -0.221 1.221 21 H -0.219 1.219 22 H -0.179 1.179 23 C -0.163 4.163 24 C 0.026 3.974 25 H 0.072 0.928 26 C -0.206 4.206 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.202 0.798 33 H 0.263 0.737 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.193 0.807 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.135 -4.566 -6.521 19.805 hybrid contribution 1.038 -1.048 0.017 1.475 sum -17.097 -5.614 -6.504 19.135 Atomic orbital electron populations 1.21557 0.93494 1.02384 1.01274 1.20136 0.97075 0.89646 1.03031 1.20971 0.99220 0.98021 0.91519 1.22037 1.07830 0.94120 1.00763 1.25315 1.00120 1.01336 0.80288 1.84240 1.64614 1.33434 1.24260 1.21804 1.13060 0.86794 0.94786 1.16461 0.78163 0.83700 0.82212 1.90761 1.48871 1.20969 1.82708 1.48474 1.62978 1.14644 1.06868 1.23307 0.98155 0.81646 1.01386 1.21613 0.82996 0.98179 0.91997 0.88980 1.42734 1.02279 1.15185 1.78071 1.19078 0.85381 0.97306 1.33556 0.91141 1.25282 0.95494 1.01100 1.02705 1.69841 0.98447 1.38543 1.56015 0.85676 0.77452 0.81745 0.78495 1.22142 1.21927 1.17882 1.23083 1.00113 0.95080 0.97988 1.21711 0.97813 0.98624 0.79218 0.92832 1.22032 0.93583 1.01896 1.03044 0.90977 0.94660 0.91671 0.88962 0.91956 0.79790 0.73738 0.89517 0.91691 0.80689 0.93439 0.89334 0.86569 0.91531 0.93476 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.06 -1.58 5.72 29.85 0.17 -1.41 16 3 C -0.09 -2.71 5.45 -19.74 -0.11 -2.82 16 4 C -0.23 -5.12 10.83 22.07 0.24 -4.88 16 5 C 0.00 -0.03 12.08 67.10 0.81 0.78 16 6 O -0.17 -5.33 7.86 -5.05 -0.04 -5.37 16 7 C -0.11 -3.83 6.93 24.07 0.17 -3.66 16 8 C 0.60 22.18 7.61 86.44 0.66 22.84 16 9 O -0.55 -21.54 13.67 -4.33 -0.06 -21.60 16 10 N -0.60 -20.26 3.07 -792.71 -2.43 -22.69 16 11 C 0.08 2.64 5.86 86.85 0.51 3.15 16 12 C 0.16 5.51 3.72 46.38 0.17 5.68 16 13 H 0.09 3.02 8.09 -2.39 -0.02 3.00 16 14 N -0.74 -33.17 5.04 -316.37 -1.59 -34.76 16 15 C -0.22 -12.13 10.44 84.03 0.88 -11.25 16 16 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 17 C -0.05 -3.13 5.50 84.86 0.47 -2.67 16 18 N -0.98 -61.73 13.97 21.65 0.30 -61.43 16 19 Si 0.94 46.47 27.73 68.60 1.90 48.37 16 20 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 22 H -0.25 -11.47 6.52 99.48 0.65 -10.82 16 23 C -0.12 -3.23 6.07 31.78 0.19 -3.04 16 24 C 0.13 3.79 3.45 45.34 0.16 3.95 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 26 C -0.15 -3.55 9.10 71.98 0.66 -2.89 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.03 0.94 7.91 -2.38 -0.02 0.92 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.93 6.73 -2.39 -0.02 1.91 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.25 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.06 2.53 6.22 -2.38 -0.01 2.52 16 36 H 0.36 16.37 5.73 -92.71 -0.53 15.84 16 37 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 38 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.12 2.24 7.85 -2.39 -0.02 2.22 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.34 6.90 -2.38 -0.02 1.32 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.47 341.79 4.19 -68.28 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.43 Total: 27.62 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.68 Total: 1.58 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -3.72 Total: -118.89 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.10 Total: -26.96 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -72.47 4.19 -68.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989413544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.035 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds