Wall clock time and date at job start Tue Mar 31 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47336 * 2 1 4 4 C 1.40363 * 126.64930 * 265.30106 * 3 2 1 5 5 C 1.35128 * 107.11533 * 180.15809 * 4 3 2 6 6 O 1.33928 * 108.76678 * 359.58389 * 5 4 3 7 7 C 1.34915 * 109.38694 * 0.26590 * 6 5 4 8 8 C 1.46652 * 125.98956 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00100 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00236 * 0.02625 * 8 7 6 11 11 C 1.46496 * 120.00534 * 180.02562 * 10 8 7 12 12 C 1.53047 * 109.45728 * 275.06566 * 11 10 8 13 13 C 1.53194 * 109.31084 * 178.61185 * 12 11 10 14 14 N 1.46921 * 108.77566 * 54.63603 * 13 12 11 15 15 C 1.36935 * 120.63034 * 126.41163 * 14 13 12 16 16 H 1.07998 * 120.00497 * 332.60819 * 15 14 13 17 17 C 1.38812 * 119.99929 * 152.60583 * 15 14 13 18 18 N 1.31619 * 119.99925 * 159.34586 * 17 15 14 19 19 Si 1.86802 * 120.00160 * 339.34502 * 17 15 14 20 20 H 1.48503 * 109.47259 * 92.93971 * 19 17 15 21 21 H 1.48499 * 109.47454 * 212.94285 * 19 17 15 22 22 H 1.48499 * 109.46952 * 332.94293 * 19 17 15 23 23 C 1.46925 * 118.73689 * 306.38735 * 14 13 12 24 24 C 1.53031 * 109.46502 * 154.99785 * 11 10 8 25 25 H 1.08992 * 109.47466 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46958 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.46996 * 59.99834 * 1 2 3 28 28 H 1.09001 * 109.46571 * 240.00058 * 2 1 3 29 29 H 1.09001 * 109.46846 * 120.00681 * 2 1 3 30 30 H 1.08000 * 126.44112 * 0.02562 * 4 3 2 31 31 H 1.07999 * 125.61472 * 179.85149 * 5 4 3 32 32 H 0.97007 * 119.99645 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46118 * 35.01744 * 11 10 8 34 34 H 1.08999 * 109.49873 * 298.56365 * 12 11 10 35 35 H 1.09003 * 109.49486 * 58.66050 * 12 11 10 36 36 H 1.09003 * 109.58697 * 294.84377 * 13 12 11 37 37 H 1.08998 * 109.70036 * 174.49040 * 13 12 11 38 38 H 0.97003 * 119.99788 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.58863 * 293.82096 * 23 14 13 40 40 H 1.09001 * 109.70567 * 173.46814 * 23 14 13 41 41 H 1.09008 * 109.49525 * 301.33668 * 24 11 10 42 42 H 1.09001 * 109.50037 * 61.39687 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3987 2.1800 -1.1224 5 6 2.7917 3.3918 -0.6718 6 8 2.6757 3.4138 0.6623 7 6 2.2141 2.2209 1.0915 8 6 1.9536 1.8487 2.4858 9 8 1.5363 0.7367 2.7510 10 7 2.1765 2.7381 3.4737 11 6 1.9168 2.3661 4.8667 12 6 0.4387 2.5974 5.1891 13 6 0.1636 2.1749 6.6357 14 7 1.0933 2.8884 7.5217 15 6 0.6257 3.6150 8.5841 16 1 -0.3656 4.0422 8.5517 17 6 1.4260 3.8024 9.7027 18 7 1.1798 4.7970 10.5289 19 14 2.8524 2.6431 10.0355 20 1 4.0929 3.2005 9.4390 21 1 3.0338 2.4893 11.5014 22 1 2.5646 1.3177 9.4307 23 6 2.5342 2.8072 7.2465 24 6 2.7828 3.2226 5.7931 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.3735 1.8557 -2.1522 31 1 3.1379 4.2094 -1.2866 32 1 2.5095 3.6243 3.2624 33 1 2.1597 1.3136 5.0128 34 1 0.2008 3.6541 5.0672 35 1 -0.1781 2.0049 4.5134 36 1 0.3140 1.1001 6.7373 37 1 -0.8625 2.4271 6.9033 38 1 1.7392 4.9281 11.3104 39 1 2.8781 1.7840 7.3980 40 1 3.0746 3.4770 7.9155 41 1 3.8345 3.0751 5.5473 42 1 2.5233 4.2735 5.6651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003568213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:29 Heat of formation + Delta-G solvation = -6.273844 kcal Electronic energy + Delta-G solvation = -23670.421922 eV Core-core repulsion = 20231.567996 eV Total energy + Delta-G solvation = -3438.853926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.91773 -39.67980 -37.65614 -35.36590 -34.42096 -32.27446 -31.55908 -30.55452 -30.37537 -29.19265 -25.34250 -24.11539 -23.09292 -22.73912 -21.89114 -21.00717 -20.04644 -19.48769 -18.17912 -16.85966 -16.53931 -16.23301 -16.01839 -15.06941 -14.66839 -14.55467 -14.17193 -14.12740 -13.80861 -13.78850 -13.29215 -13.10359 -12.95840 -12.79514 -12.54104 -12.39234 -12.00386 -11.80537 -11.48211 -11.15204 -10.96676 -10.83644 -10.57732 -10.31592 -10.24036 -10.03459 -9.95142 -9.75489 -9.47918 -9.02620 -8.69421 -8.64103 -7.00290 -5.95673 -3.31669 0.90837 2.12225 2.53875 3.13561 3.23704 3.30811 3.48808 3.51987 4.45089 4.51350 4.52219 4.70385 4.94463 5.10982 5.12992 5.20658 5.30798 5.31165 5.37787 5.43427 5.51671 5.64119 5.72971 5.80417 5.84732 6.00798 6.02325 6.07217 6.14935 6.15192 6.21903 6.29356 6.37856 6.56220 6.59399 6.63715 6.65257 6.72476 6.91217 7.52751 7.95130 8.12103 8.32287 8.92951 9.71033 10.08478 11.20303 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.003503 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.022918 B = 7990.966509 C = 8290.817092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.088 4.088 4 C -0.224 4.224 5 C -0.009 4.009 6 O -0.163 6.163 7 C -0.078 4.078 8 C 0.599 3.401 9 O -0.517 6.517 10 N -0.713 5.713 11 C 0.151 3.849 12 C -0.142 4.142 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.130 3.870 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.154 0.846 31 H 0.209 0.791 32 H 0.402 0.598 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -4.571 -24.064 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.243 4.243 5 C -0.079 4.079 6 O -0.059 6.059 7 C -0.130 4.130 8 C 0.385 3.615 9 O -0.395 6.395 10 N -0.362 5.362 11 C 0.048 3.952 12 C -0.182 4.182 13 C 0.025 3.975 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.181 4.181 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.172 0.828 31 H 0.225 0.775 32 H 0.236 0.764 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.433 -5.044 -23.447 24.228 hybrid contribution 1.100 -0.010 -0.179 1.115 sum 4.533 -5.054 -23.626 24.582 Atomic orbital electron populations 1.21636 0.94328 1.01837 1.01898 1.20131 0.96402 0.90120 1.03321 1.20639 0.99659 0.97745 0.91030 1.21728 1.07811 0.94592 1.00147 1.24328 1.02648 1.00046 0.80851 1.84070 1.65031 1.33732 1.23042 1.22068 1.10542 0.85183 0.95251 1.16561 0.78329 0.84942 0.81697 1.90857 1.46130 1.20515 1.81965 1.46229 1.66206 1.16547 1.07234 1.21077 0.96122 1.00156 0.77892 1.22397 0.94849 1.01834 0.99101 1.20894 0.94567 0.94369 0.87704 1.44404 1.00245 1.57355 1.30991 1.18935 1.02829 1.24746 0.92301 0.89615 1.25285 0.98372 0.97805 0.96132 1.69838 1.40790 1.28773 1.15733 0.86974 0.82441 0.83208 0.76205 1.21618 1.23094 1.19454 1.21301 0.86619 0.98765 0.92972 1.22359 0.98097 1.00282 0.97355 0.92260 0.92110 0.93211 0.91261 0.89175 0.82821 0.77473 0.76410 0.89589 0.91737 0.92142 0.95623 0.91505 0.92758 0.95412 0.90454 0.92150 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.90 37.16 0.37 -1.08 16 2 C -0.06 -0.67 5.72 -27.88 -0.16 -0.83 16 3 C -0.09 -1.01 5.45 -104.43 -0.57 -1.58 16 4 C -0.22 -1.96 10.83 -39.89 -0.43 -2.40 16 5 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 6 O -0.16 -1.80 10.40 5.00 0.05 -1.75 16 7 C -0.08 -1.00 7.13 -36.80 -0.26 -1.27 16 8 C 0.60 8.82 7.75 -12.86 -0.10 8.72 16 9 O -0.52 -8.79 14.30 5.19 0.07 -8.71 16 10 N -0.71 -9.96 5.07 -55.08 -0.28 -10.24 16 11 C 0.15 2.45 2.41 -67.89 -0.16 2.28 16 12 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 13 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 14 N -0.61 -14.32 2.77 -172.33 -0.48 -14.80 16 15 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 19 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16 20 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.39 16 22 H -0.27 -6.72 6.63 56.52 0.37 -6.34 16 23 C 0.13 2.78 4.20 -3.71 -0.02 2.76 16 24 C -0.14 -2.40 5.55 -26.62 -0.15 -2.55 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.13 6.72 -51.93 -0.35 0.78 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.40 4.84 8.36 -40.82 -0.34 4.50 16 33 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 40 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 41 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -32.15 337.38 -6.80 -38.95 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.35 Total: 2.36 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.54 Total: -2.03 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.02 Total: -52.01 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.13 Total: -10.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.15 -6.80 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003568213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.673 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds