Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47336 * 2 1 4 4 C 1.40363 * 126.64930 * 265.30106 * 3 2 1 5 5 C 1.35128 * 107.11533 * 180.15809 * 4 3 2 6 6 O 1.33928 * 108.76678 * 359.58389 * 5 4 3 7 7 C 1.34915 * 109.38694 * 0.26590 * 6 5 4 8 8 C 1.46652 * 125.98956 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00100 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00236 * 0.02625 * 8 7 6 11 11 C 1.46496 * 120.00534 * 180.02562 * 10 8 7 12 12 C 1.53047 * 109.45728 * 275.06566 * 11 10 8 13 13 C 1.53194 * 109.31084 * 178.61185 * 12 11 10 14 14 N 1.46921 * 108.77566 * 54.63603 * 13 12 11 15 15 C 1.36935 * 120.63034 * 126.41163 * 14 13 12 16 16 H 1.07998 * 120.00497 * 332.60819 * 15 14 13 17 17 C 1.38812 * 119.99929 * 152.60583 * 15 14 13 18 18 N 1.31619 * 119.99925 * 159.34586 * 17 15 14 19 19 Si 1.86802 * 120.00160 * 339.34502 * 17 15 14 20 20 H 1.48503 * 109.47259 * 92.93971 * 19 17 15 21 21 H 1.48499 * 109.47454 * 212.94285 * 19 17 15 22 22 H 1.48499 * 109.46952 * 332.94293 * 19 17 15 23 23 C 1.46925 * 118.73689 * 306.38735 * 14 13 12 24 24 C 1.53031 * 109.46502 * 154.99785 * 11 10 8 25 25 H 1.08992 * 109.47466 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46958 * 300.00255 * 1 2 3 27 27 H 1.09004 * 109.46996 * 59.99834 * 1 2 3 28 28 H 1.09001 * 109.46571 * 240.00058 * 2 1 3 29 29 H 1.09001 * 109.46846 * 120.00681 * 2 1 3 30 30 H 1.08000 * 126.44112 * 0.02562 * 4 3 2 31 31 H 1.07999 * 125.61472 * 179.85149 * 5 4 3 32 32 H 0.97007 * 119.99645 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.46118 * 35.01744 * 11 10 8 34 34 H 1.08999 * 109.49873 * 298.56365 * 12 11 10 35 35 H 1.09003 * 109.49486 * 58.66050 * 12 11 10 36 36 H 1.09003 * 109.58697 * 294.84377 * 13 12 11 37 37 H 1.08998 * 109.70036 * 174.49040 * 13 12 11 38 38 H 0.97003 * 119.99788 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.58863 * 293.82096 * 23 14 13 40 40 H 1.09001 * 109.70567 * 173.46814 * 23 14 13 41 41 H 1.09008 * 109.49525 * 301.33668 * 24 11 10 42 42 H 1.09001 * 109.50037 * 61.39687 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3987 2.1800 -1.1224 5 6 2.7917 3.3918 -0.6718 6 8 2.6757 3.4138 0.6623 7 6 2.2141 2.2209 1.0915 8 6 1.9536 1.8487 2.4858 9 8 1.5363 0.7367 2.7510 10 7 2.1765 2.7381 3.4737 11 6 1.9168 2.3661 4.8667 12 6 0.4387 2.5974 5.1891 13 6 0.1636 2.1749 6.6357 14 7 1.0933 2.8884 7.5217 15 6 0.6257 3.6150 8.5841 16 1 -0.3656 4.0422 8.5517 17 6 1.4260 3.8024 9.7027 18 7 1.1798 4.7970 10.5289 19 14 2.8524 2.6431 10.0355 20 1 4.0929 3.2005 9.4390 21 1 3.0338 2.4893 11.5014 22 1 2.5646 1.3177 9.4307 23 6 2.5342 2.8072 7.2465 24 6 2.7828 3.2226 5.7931 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.3735 1.8557 -2.1522 31 1 3.1379 4.2094 -1.2866 32 1 2.5095 3.6243 3.2624 33 1 2.1597 1.3136 5.0128 34 1 0.2008 3.6541 5.0672 35 1 -0.1781 2.0049 4.5134 36 1 0.3140 1.1001 6.7373 37 1 -0.8625 2.4271 6.9033 38 1 1.7392 4.9281 11.3104 39 1 2.8781 1.7840 7.3980 40 1 3.0746 3.4770 7.9155 41 1 3.8345 3.0751 5.5473 42 1 2.5233 4.2735 5.6651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003568213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -28.022784 kcal Electronic energy + Delta-G solvation = -23671.365027 eV Core-core repulsion = 20231.567996 eV Total energy + Delta-G solvation = -3439.797031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.67957 -40.89214 -39.16096 -36.44622 -35.66193 -34.10783 -32.41271 -32.03318 -31.94394 -30.21370 -26.98205 -25.23640 -24.53152 -23.92122 -23.18447 -22.00218 -21.34356 -20.68557 -19.26742 -18.64458 -17.58705 -17.36773 -17.02476 -16.74836 -15.98544 -15.72452 -15.57916 -15.36226 -15.21917 -14.77578 -14.63206 -14.50114 -14.23326 -14.04002 -13.79887 -13.57091 -13.48497 -13.29472 -12.62130 -12.59849 -12.31003 -12.27995 -12.06584 -11.93348 -11.82977 -11.59342 -11.39816 -11.17118 -10.71579 -10.68862 -10.20726 -9.55600 -8.98390 -8.16927 -5.49659 0.04897 1.29587 1.42819 1.43333 1.51627 1.70326 2.10303 2.21979 2.41226 3.04391 3.31001 3.66889 3.75746 3.80529 3.89664 3.93485 4.18049 4.28452 4.40560 4.44986 4.45723 4.51380 4.59512 4.61253 4.65989 4.80722 4.84386 4.89083 4.97410 5.02594 5.04016 5.07137 5.13092 5.27583 5.33798 5.36160 5.38938 5.48564 5.85600 5.89283 6.12066 6.47098 6.89440 7.03964 7.60107 8.00550 9.02904 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.003503 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.022918 B = 7990.966509 C = 8290.817092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.089 4.089 4 C -0.233 4.233 5 C 0.012 3.988 6 O -0.173 6.173 7 C -0.115 4.115 8 C 0.598 3.402 9 O -0.548 6.548 10 N -0.706 5.706 11 C 0.161 3.839 12 C -0.128 4.128 13 C 0.148 3.852 14 N -0.619 5.619 15 C -0.251 4.251 16 H 0.053 0.947 17 C -0.033 4.033 18 N -0.956 5.956 19 Si 0.945 3.055 20 H -0.269 1.269 21 H -0.311 1.311 22 H -0.264 1.264 23 C 0.122 3.878 24 C -0.129 4.129 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.182 0.818 31 H 0.255 0.745 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.059 0.941 38 H 0.262 0.738 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -4.957 -27.453 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.252 4.252 5 C -0.057 4.057 6 O -0.068 6.068 7 C -0.167 4.167 8 C 0.386 3.614 9 O -0.428 6.428 10 N -0.355 5.355 11 C 0.057 3.943 12 C -0.168 4.168 13 C 0.023 3.977 14 N -0.344 5.344 15 C -0.380 4.380 16 H 0.070 0.930 17 C -0.228 4.228 18 N -0.602 5.602 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.240 1.240 22 H -0.188 1.188 23 C -0.003 4.003 24 C -0.168 4.168 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.200 0.800 31 H 0.270 0.730 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.128 -5.435 -26.890 27.909 hybrid contribution 0.506 0.135 0.708 0.881 sum 5.634 -5.300 -26.182 27.301 Atomic orbital electron populations 1.21591 0.94175 1.02301 1.01185 1.20151 0.96514 0.90133 1.03321 1.20967 0.98535 0.97894 0.91808 1.22080 1.07904 0.94507 1.00718 1.25323 0.99697 1.00932 0.79772 1.84060 1.65178 1.32930 1.24668 1.21668 1.13921 0.86636 0.94450 1.16807 0.77552 0.84452 0.82624 1.90835 1.47535 1.21716 1.82741 1.45984 1.66331 1.17096 1.06123 1.20766 0.94977 0.99443 0.79146 1.22213 0.96059 1.01537 0.97039 1.21003 0.93659 0.94368 0.88712 1.44508 1.01843 1.57566 1.30465 1.18867 1.01523 1.23989 0.93630 0.92952 1.25890 1.01654 0.99084 0.96140 1.69964 1.42854 1.30704 1.16688 0.85945 0.80189 0.81153 0.75387 1.19505 1.23981 1.18829 1.21366 0.84856 0.98686 0.95398 1.22172 0.99997 1.00162 0.94473 0.91283 0.94819 0.91766 0.88819 0.91544 0.80034 0.72966 0.75138 0.90544 0.92076 0.91488 0.94952 0.92212 0.92872 0.94760 0.92290 0.89260 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.90 71.98 0.71 -1.94 16 2 C -0.06 -1.29 5.72 29.85 0.17 -1.11 16 3 C -0.09 -1.86 5.45 -19.74 -0.11 -1.97 16 4 C -0.23 -3.23 10.83 22.07 0.24 -2.99 16 5 C 0.01 0.14 12.08 67.10 0.81 0.95 16 6 O -0.17 -3.34 10.40 -5.02 -0.05 -3.39 16 7 C -0.12 -2.79 7.13 24.07 0.17 -2.61 16 8 C 0.60 17.21 7.75 86.44 0.67 17.88 16 9 O -0.55 -18.69 14.30 -4.35 -0.06 -18.75 16 10 N -0.71 -18.76 5.07 -446.40 -2.26 -21.02 16 11 C 0.16 5.01 2.41 45.02 0.11 5.12 16 12 C -0.13 -4.34 5.65 30.67 0.17 -4.17 16 13 C 0.15 5.94 6.52 86.36 0.56 6.50 16 14 N -0.62 -29.26 2.77 -699.12 -1.94 -31.20 16 15 C -0.25 -14.28 10.03 84.03 0.84 -13.44 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 17 C -0.03 -1.92 5.23 84.86 0.44 -1.47 16 18 N -0.96 -60.08 13.97 21.65 0.30 -59.78 16 19 Si 0.94 46.35 24.35 68.60 1.67 48.02 16 20 H -0.27 -12.22 6.62 99.48 0.66 -11.56 16 21 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 22 H -0.26 -12.54 6.63 99.48 0.66 -11.88 16 23 C 0.12 5.08 4.20 86.36 0.36 5.44 16 24 C -0.13 -4.13 5.55 30.67 0.17 -3.96 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.03 0.83 7.93 -2.38 -0.02 0.81 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.66 6.72 -2.39 -0.02 1.65 16 30 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.25 0.38 8.06 -2.91 -0.02 0.35 16 32 H 0.41 9.18 8.36 -92.70 -0.77 8.41 16 33 H 0.08 2.59 7.58 -2.39 -0.02 2.57 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.03 1.39 7.07 -2.39 -0.02 1.38 16 40 H 0.06 2.67 4.50 -2.39 -0.01 2.66 16 41 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -71.88 337.38 3.14 -68.74 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.15 Total: 15.15 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.33 Total: 2.23 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.90 Total: -112.00 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.11 Total: -22.14 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.67 Total: 48.02 kcal Total: -71.88 3.14 -68.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003568213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.717 kcal (2) G-P(sol) polarization free energy of solvation -71.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds