Wall clock time and date at job start Tue Mar 31 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47296 * 2 1 4 4 C 1.50698 * 109.47116 * 239.99809 * 2 1 3 5 5 C 1.40363 * 126.64737 * 59.69384 * 4 2 1 6 6 C 1.35137 * 107.11770 * 179.83585 * 5 4 2 7 7 O 1.33936 * 108.76408 * 0.42682 * 6 5 4 8 8 C 1.34912 * 109.38310 * 359.72663 * 7 6 5 9 9 C 1.46658 * 125.98455 * 179.97438 * 8 7 6 10 10 O 1.21694 * 120.00126 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99934 * 0.02815 * 9 8 7 12 12 C 1.46508 * 119.99901 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.88236 * 328.87493 * 12 11 9 14 14 C 1.55154 * 111.00084 * 204.99953 * 12 11 9 15 15 C 1.54317 * 102.94161 * 277.42241 * 14 12 11 16 16 N 1.47024 * 107.27479 * 337.81055 * 15 14 12 17 17 C 1.36929 * 125.65271 * 178.98430 * 16 15 14 18 18 H 1.08006 * 120.00326 * 174.78464 * 17 16 15 19 19 C 1.38809 * 119.99889 * 354.79061 * 17 16 15 20 20 N 1.31621 * 120.00404 * 7.05010 * 19 17 16 21 21 Si 1.86806 * 120.00054 * 187.05179 * 19 17 16 22 22 H 1.48501 * 109.46847 * 94.98318 * 21 19 17 23 23 H 1.48494 * 109.47340 * 214.98251 * 21 19 17 24 24 H 1.48499 * 109.47252 * 334.98844 * 21 19 17 25 25 C 1.47429 * 108.69948 * 358.93949 * 16 15 14 26 26 H 1.09008 * 109.47061 * 60.00368 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47246 * 300.00422 * 1 2 3 29 29 H 1.08998 * 109.47072 * 120.00178 * 2 1 3 30 30 H 1.09002 * 109.47058 * 60.00071 * 3 2 1 31 31 H 1.09001 * 109.47340 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47470 * 299.99615 * 3 2 1 33 33 H 1.08005 * 126.44261 * 359.97438 * 5 4 2 34 34 H 1.07997 * 125.61501 * 180.15346 * 6 5 4 35 35 H 0.96998 * 120.00277 * 359.97438 * 11 9 8 36 36 H 1.09003 * 110.72108 * 35.78820 * 14 12 11 37 37 H 1.09004 * 110.72047 * 158.88337 * 14 12 11 38 38 H 1.09009 * 109.88294 * 97.22750 * 15 14 12 39 39 H 1.08999 * 109.89001 * 218.39136 * 15 14 12 40 40 H 0.96997 * 119.99907 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36548 * 265.29132 * 25 16 15 42 42 H 1.08999 * 110.36811 * 142.96744 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7758 -0.3581 -2.5647 6 6 2.4182 -1.2562 -3.3438 7 8 3.0436 -2.1406 -2.5559 8 6 2.8204 -1.8250 -1.2634 9 6 3.3339 -2.5521 -0.0978 10 8 3.0632 -2.1700 1.0255 11 7 4.1056 -3.6435 -0.2707 12 6 4.6180 -4.3702 0.8937 13 1 4.7835 -3.6935 1.7321 14 6 5.9152 -5.1441 0.5394 15 6 5.3795 -6.4396 -0.1057 16 7 3.9999 -6.6248 0.3676 17 6 3.1644 -7.6493 0.0108 18 1 2.1956 -7.7440 0.4786 19 6 3.5628 -8.5664 -0.9521 20 7 4.7921 -8.5358 -1.4215 21 14 2.3542 -9.8440 -1.5818 22 1 1.7143 -9.3486 -2.8269 23 1 3.0758 -11.1103 -1.8661 24 1 1.3116 -10.0886 -0.5530 25 6 3.6653 -5.5252 1.2909 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.1791 0.4754 -2.9048 34 1 2.4227 -1.2625 -4.4237 35 1 4.3211 -3.9483 -1.1659 36 1 6.5188 -4.5801 -0.1718 37 1 6.4893 -5.3668 1.4389 38 1 5.3893 -6.3445 -1.1916 39 1 5.9930 -7.2872 0.1998 40 1 5.0703 -9.1764 -2.0946 41 1 3.8455 -5.8279 2.3224 42 1 2.6265 -5.2223 1.1595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015600245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:12 Heat of formation + Delta-G solvation = -24.965606 kcal Electronic energy + Delta-G solvation = -23853.058986 eV Core-core repulsion = 20413.394524 eV Total energy + Delta-G solvation = -3439.664462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.69541 -40.81128 -38.90788 -37.10631 -35.42104 -33.71531 -32.72293 -31.30854 -30.57596 -28.91246 -27.98148 -26.53223 -24.63450 -23.59407 -22.13460 -21.86527 -21.26752 -20.65173 -19.23658 -18.73354 -17.49086 -17.31180 -16.92780 -16.67976 -15.91796 -15.73803 -15.58076 -15.42738 -14.96012 -14.75714 -14.10505 -14.06865 -14.01368 -13.83934 -13.61466 -13.42691 -13.03530 -12.90069 -12.84525 -12.34845 -12.26663 -12.15746 -12.13279 -12.03526 -11.86755 -11.85456 -11.63530 -10.91094 -10.71992 -10.65007 -10.23085 -9.55976 -8.87964 -7.87827 -5.21016 0.05904 1.43793 1.44379 1.45354 1.54465 1.75138 2.10773 2.27637 2.47785 3.31167 3.64991 3.65605 3.69875 3.83071 3.89100 4.04399 4.28703 4.31350 4.33792 4.42819 4.56722 4.64369 4.70173 4.77231 4.81574 4.85863 4.92186 4.97643 5.00333 5.02850 5.06046 5.20813 5.38753 5.40718 5.43109 5.43971 5.58928 5.64914 5.74285 5.93095 6.18285 6.47011 7.02661 7.09832 7.75228 8.39868 9.22733 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018750 B = 0.004216 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.969778 B = 6639.356857 C = 7106.274857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 C -0.131 4.131 4 C -0.076 4.076 5 C -0.227 4.227 6 C 0.006 3.994 7 O -0.178 6.178 8 C -0.121 4.121 9 C 0.599 3.401 10 O -0.552 6.552 11 N -0.694 5.694 12 C 0.139 3.861 13 H 0.111 0.889 14 C -0.133 4.133 15 C 0.183 3.817 16 N -0.622 5.622 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.122 3.878 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.184 0.816 34 H 0.251 0.749 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.019 0.981 39 H 0.010 0.990 40 H 0.248 0.752 41 H 0.038 0.962 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 20.226 -2.787 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.188 4.188 4 C -0.079 4.079 5 C -0.245 4.245 6 C -0.063 4.063 7 O -0.074 6.074 8 C -0.172 4.172 9 C 0.388 3.612 10 O -0.433 6.433 11 N -0.342 5.342 12 C 0.034 3.966 13 H 0.129 0.871 14 C -0.172 4.172 15 C 0.058 3.942 16 N -0.348 5.348 17 C -0.374 4.374 18 H 0.091 0.909 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.197 1.197 25 C -0.004 4.004 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.201 0.799 34 H 0.267 0.733 35 H 0.242 0.758 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.614 20.029 -2.171 20.468 hybrid contribution -0.450 -1.379 -0.846 1.679 sum -4.064 18.651 -3.017 19.325 Atomic orbital electron populations 1.21741 0.93048 1.01231 1.03086 1.20029 0.96753 0.96653 0.94110 1.21716 1.00432 0.93614 1.03025 1.20915 0.95804 0.93621 0.97566 1.21981 1.07078 1.04650 0.90804 1.25319 0.94109 0.88284 0.98562 1.84097 1.59663 1.48000 1.15666 1.21733 1.10697 1.02217 0.82554 1.16805 0.78028 0.79877 0.86510 1.90738 1.60208 1.68826 1.23557 1.45792 1.50569 1.27061 1.10793 1.22084 0.93835 0.92186 0.88494 0.87111 1.23085 0.95667 0.95914 1.02508 1.20968 0.84270 0.93090 0.95891 1.44714 1.12028 1.25896 1.52204 1.19357 0.97417 1.03580 1.17024 0.90889 1.25544 0.98318 1.01559 0.99636 1.70159 1.16953 1.39144 1.33027 0.85145 0.78246 0.78150 0.78314 1.21431 1.21797 1.19743 1.22076 0.96878 0.88044 0.93393 0.90968 0.94508 0.90993 0.90101 0.91104 0.93780 0.91039 0.79867 0.73285 0.75821 0.89089 0.88535 0.96273 0.97165 0.94275 0.94436 0.95472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.09 71.98 0.65 -2.04 16 2 C -0.06 -1.37 3.19 -11.54 -0.04 -1.41 16 3 C -0.13 -2.41 9.10 71.98 0.65 -1.75 16 4 C -0.08 -1.98 4.87 -19.74 -0.10 -2.08 16 5 C -0.23 -4.30 10.41 22.07 0.23 -4.07 16 6 C 0.01 0.12 12.08 67.11 0.81 0.93 16 7 O -0.18 -4.98 10.40 -5.07 -0.05 -5.03 16 8 C -0.12 -3.77 7.13 24.08 0.17 -3.60 16 9 C 0.60 21.40 7.79 86.44 0.67 22.07 16 10 O -0.55 -21.43 14.05 -4.33 -0.06 -21.49 16 11 N -0.69 -24.66 5.18 -439.93 -2.28 -26.94 16 12 C 0.14 5.00 3.43 46.38 0.16 5.16 16 13 H 0.11 3.66 7.54 -2.39 -0.02 3.64 16 14 C -0.13 -4.63 6.55 31.78 0.21 -4.42 16 15 C 0.18 8.76 5.37 86.73 0.47 9.22 16 16 N -0.62 -32.24 3.39 -691.99 -2.35 -34.58 16 17 C -0.24 -14.03 10.26 84.03 0.86 -13.17 16 18 H 0.07 4.11 7.84 -2.91 -0.02 4.09 16 19 C -0.06 -3.26 5.48 84.86 0.46 -2.79 16 20 N -0.94 -56.12 10.36 21.65 0.22 -55.89 16 21 Si 0.97 46.22 29.56 68.60 2.03 48.25 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.12 5.32 6.93 86.85 0.60 5.92 16 26 H 0.07 1.15 8.05 -2.38 -0.02 1.13 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 2.47 5.48 -2.39 -0.01 2.46 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 33 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.41 14.54 8.42 -92.71 -0.78 13.76 16 36 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.02 1.01 7.30 -2.38 -0.02 1.00 16 39 H 0.01 0.55 7.61 -2.39 -0.02 0.53 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.91 345.79 3.57 -67.34 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.24 Total: 20.38 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 5.82 Total: 7.97 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -4.41 Total: -117.42 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.11 Total: -26.52 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.91 3.57 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015600245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.372 kcal (2) G-P(sol) polarization free energy of solvation -70.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds