Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.50689 * 109.47286 * 179.97438 * 3 2 1 5 5 O 1.33660 * 125.80144 * 270.18720 * 4 3 2 6 6 C 1.34214 * 110.90821 * 180.28502 * 5 4 3 7 7 C 1.34178 * 109.12362 * 359.72650 * 6 5 4 8 8 C 1.36411 * 125.80738 * 89.99750 * 4 3 2 9 9 C 1.47385 * 127.18950 * 0.02562 * 8 4 3 10 10 O 1.21616 * 119.99496 * 359.70561 * 9 8 4 11 11 N 1.34774 * 120.00249 * 179.70754 * 9 8 4 12 12 C 1.46498 * 119.99837 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.78022 * 36.79262 * 12 11 9 14 14 C 1.55161 * 110.71724 * 160.02312 * 12 11 9 15 15 C 1.55129 * 101.48184 * 82.70073 * 14 12 11 16 16 N 1.47425 * 104.72388 * 37.29428 * 15 14 12 17 17 C 1.36936 * 125.64754 * 155.82069 * 16 15 14 18 18 H 1.07996 * 119.99955 * 199.18837 * 17 16 15 19 19 C 1.38811 * 120.00309 * 19.18399 * 17 16 15 20 20 N 1.31622 * 120.00115 * 28.44809 * 19 17 16 21 21 Si 1.86799 * 120.00173 * 208.72953 * 19 17 16 22 22 H 1.48493 * 109.47418 * 179.72460 * 21 19 17 23 23 H 1.48505 * 109.46957 * 299.72340 * 21 19 17 24 24 H 1.48496 * 109.47590 * 59.71887 * 21 19 17 25 25 C 1.47015 * 108.70145 * 335.55282 * 16 15 14 26 26 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47325 * 299.99955 * 1 2 3 28 28 H 1.09003 * 109.47267 * 60.00580 * 1 2 3 29 29 H 1.08997 * 109.46855 * 239.99858 * 2 1 3 30 30 H 1.09002 * 109.46751 * 119.99521 * 2 1 3 31 31 H 1.08998 * 109.47331 * 59.99425 * 3 2 1 32 32 H 1.09001 * 109.47023 * 300.00173 * 3 2 1 33 33 H 1.07996 * 125.43594 * 179.72329 * 6 5 4 34 34 H 1.08002 * 127.01565 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99726 * 0.02562 * 11 9 8 36 36 H 1.09002 * 111.00695 * 200.93354 * 14 12 11 37 37 H 1.09002 * 111.00621 * 324.75956 * 14 12 11 38 38 H 1.09007 * 110.49696 * 278.45294 * 15 14 12 39 39 H 1.09002 * 110.34671 * 156.06236 * 15 14 12 40 40 H 0.97002 * 119.99472 * 5.94122 * 20 19 17 41 41 H 1.09005 * 109.88112 * 120.70617 * 25 16 15 42 42 H 1.09002 * 109.88578 * 241.86686 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.3283 1.4392 1.0850 6 6 5.6255 1.4466 0.7406 7 6 5.7251 1.4490 -0.5975 8 6 4.3455 1.4424 -1.1053 9 6 3.9151 1.4426 -2.5149 10 8 2.7302 1.4376 -2.7888 11 7 4.8345 1.4484 -3.5003 12 6 4.4066 1.4480 -4.9014 13 1 3.5103 2.0541 -5.0321 14 6 5.5484 1.9506 -5.8241 15 6 6.3893 0.6597 -6.0059 16 7 5.3959 -0.4268 -6.0831 17 6 5.5867 -1.6412 -6.6864 18 1 4.7359 -2.2444 -6.9670 19 6 6.8735 -2.0970 -6.9375 20 7 7.8688 -1.7171 -6.1645 21 14 7.1942 -3.2433 -8.3772 22 1 8.6402 -3.5765 -8.4322 23 1 6.4053 -4.4894 -8.2030 24 1 6.7917 -2.5754 -9.6410 25 6 4.1688 0.0069 -5.3994 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.4565 1.4501 1.4304 34 1 6.6333 1.4543 -1.1819 35 1 5.7795 1.4519 -3.2817 36 1 5.1541 2.3015 -6.7778 37 1 6.1321 2.7300 -5.3343 38 1 7.0491 0.5105 -5.1512 39 1 6.9678 0.7111 -6.9283 40 1 7.6917 -1.1895 -5.3701 41 1 3.3303 -0.0111 -6.0957 42 1 3.9644 -0.6488 -4.5530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015990769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -13.388918 kcal Electronic energy + Delta-G solvation = -23656.258851 eV Core-core repulsion = 20217.096392 eV Total energy + Delta-G solvation = -3439.162459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -42.64216 -39.45456 -37.36802 -35.29207 -33.95310 -32.95826 -31.68571 -30.39726 -29.12442 -27.59174 -26.41822 -24.36725 -23.37683 -21.91921 -21.28870 -20.31209 -19.82374 -19.69237 -17.96407 -17.44350 -16.26554 -16.06324 -15.76888 -15.13703 -14.72951 -14.64066 -14.31939 -13.86425 -13.68308 -13.46209 -13.19191 -13.08193 -13.01421 -12.79856 -12.12595 -12.06463 -11.88216 -11.53863 -11.38078 -10.96088 -10.78725 -10.73929 -10.67482 -10.49116 -10.32652 -10.00795 -9.85978 -9.71948 -9.54109 -8.80574 -8.56853 -8.37727 -6.91462 -6.09983 -3.14719 1.35871 2.00372 2.71425 3.44054 3.51202 3.54407 3.55216 3.72513 4.38105 4.60008 4.75394 4.82195 4.90134 4.95958 5.12430 5.17564 5.24633 5.35717 5.37342 5.46378 5.59407 5.61841 5.66282 5.71823 5.73073 5.84207 6.04015 6.06278 6.10318 6.14773 6.20019 6.24116 6.28189 6.44516 6.68978 6.88124 6.94432 6.96463 7.03205 7.77780 7.85211 8.46170 8.50845 9.02962 9.82210 10.38501 11.22178 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003848 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.818973 B = 7274.445441 C = 7579.328357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.046 4.046 4 C 0.075 3.925 5 O -0.177 6.177 6 C -0.042 4.042 7 C -0.186 4.186 8 C -0.237 4.237 9 C 0.589 3.411 10 O -0.545 6.545 11 N -0.704 5.704 12 C 0.134 3.866 13 H 0.091 0.909 14 C -0.144 4.144 15 C 0.143 3.857 16 N -0.601 5.601 17 C -0.335 4.335 18 H 0.063 0.937 19 C -0.025 4.025 20 N -0.915 5.915 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.126 3.874 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.207 0.793 34 H 0.157 0.843 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.052 0.948 40 H 0.267 0.733 41 H 0.033 0.967 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.982 9.501 13.893 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.083 4.083 4 C 0.022 3.978 5 O -0.073 6.073 6 C -0.108 4.108 7 C -0.205 4.205 8 C -0.242 4.242 9 C 0.377 3.623 10 O -0.425 6.425 11 N -0.354 5.354 12 C 0.029 3.971 13 H 0.109 0.891 14 C -0.183 4.183 15 C 0.018 3.982 16 N -0.328 5.328 17 C -0.463 4.463 18 H 0.081 0.919 19 C -0.227 4.227 20 N -0.556 5.556 21 Si 0.894 3.106 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.000 4.000 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.727 8.598 13.058 17.020 hybrid contribution -0.308 0.637 0.885 1.133 sum -7.034 9.234 13.944 18.143 Atomic orbital electron populations 1.21728 0.94969 1.01958 1.01942 1.21451 0.96320 0.94923 1.02724 1.20479 0.83462 0.99425 1.04919 1.22814 0.93799 0.98075 0.83079 1.83751 1.17122 1.71430 1.35033 1.23824 0.83510 1.07091 0.96385 1.22929 0.96849 1.06118 0.94601 1.21234 0.93238 1.15617 0.94085 1.17156 0.85573 0.75960 0.83627 1.90730 1.16485 1.51237 1.84034 1.45766 1.09571 1.74189 1.05860 1.21959 0.97959 0.97903 0.79289 0.89081 1.23173 0.97244 0.98741 0.99134 1.21572 0.91760 0.85399 0.99499 1.44563 1.10948 1.13017 1.64296 1.19731 0.94579 0.95875 1.36124 0.91917 1.25757 0.92118 1.01557 1.03245 1.70800 1.34117 1.37096 1.13580 0.83534 0.75816 0.75363 0.75916 1.21118 1.22027 1.22094 1.21728 0.91191 0.92143 0.94947 0.92446 0.92848 0.92109 0.90941 0.92082 0.90270 0.86764 0.77630 0.82528 0.76617 0.90079 0.91294 0.95822 0.93012 0.92242 0.94885 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 3 C -0.05 -0.53 5.22 -27.89 -0.15 -0.68 16 4 C 0.08 1.00 6.63 -34.97 -0.23 0.77 16 5 O -0.18 -2.15 10.52 7.64 0.08 -2.07 16 6 C -0.04 -0.44 12.03 29.30 0.35 -0.09 16 7 C -0.19 -2.25 10.60 -37.46 -0.40 -2.65 16 8 C -0.24 -3.49 6.31 -103.28 -0.65 -4.14 16 9 C 0.59 10.00 7.81 -12.54 -0.10 9.90 16 10 O -0.55 -10.29 14.58 5.26 0.08 -10.22 16 11 N -0.70 -11.69 5.11 -53.12 -0.27 -11.96 16 12 C 0.13 2.41 3.24 -66.10 -0.21 2.19 16 13 H 0.09 1.58 7.70 -51.93 -0.40 1.18 16 14 C -0.14 -2.48 6.65 -24.46 -0.16 -2.64 16 15 C 0.14 3.23 5.36 -2.41 -0.01 3.22 16 16 N -0.60 -15.42 3.26 -169.94 -0.55 -15.98 16 17 C -0.34 -9.65 10.00 -15.06 -0.15 -9.81 16 18 H 0.06 1.82 7.97 -52.49 -0.42 1.41 16 19 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 20 N -0.92 -27.51 13.00 55.49 0.72 -26.79 16 21 Si 1.06 25.55 30.00 -169.99 -5.10 20.45 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.13 2.82 6.98 -3.07 -0.02 2.80 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.47 6.49 -51.93 -0.34 1.14 16 33 H 0.21 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.16 1.64 7.74 -52.49 -0.41 1.24 16 35 H 0.40 6.09 7.79 -40.82 -0.32 5.77 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.56 6.81 -51.93 -0.35 0.21 16 39 H 0.05 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.27 8.00 6.19 -40.82 -0.25 7.75 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -33.47 347.70 -7.77 -41.24 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.35 Total: 4.55 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.61 Total: -4.48 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.10 Total: -54.72 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.16 Total: -12.29 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.10 Total: 20.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.47 -7.77 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015990769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.849 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds