Wall clock time and date at job start Tue Mar 31 2020 06:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 C 1.50689 * 109.47286 * 179.97438 * 3 2 1 5 5 O 1.33660 * 125.80144 * 270.18720 * 4 3 2 6 6 C 1.34214 * 110.90821 * 180.28502 * 5 4 3 7 7 C 1.34178 * 109.12362 * 359.72650 * 6 5 4 8 8 C 1.36411 * 125.80738 * 89.99750 * 4 3 2 9 9 C 1.47385 * 127.18950 * 0.02562 * 8 4 3 10 10 O 1.21616 * 119.99496 * 359.70561 * 9 8 4 11 11 N 1.34774 * 120.00249 * 179.70754 * 9 8 4 12 12 C 1.46498 * 119.99837 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.78022 * 36.79262 * 12 11 9 14 14 C 1.55161 * 110.71724 * 160.02312 * 12 11 9 15 15 C 1.55129 * 101.48184 * 82.70073 * 14 12 11 16 16 N 1.47425 * 104.72388 * 37.29428 * 15 14 12 17 17 C 1.36936 * 125.64754 * 155.82069 * 16 15 14 18 18 H 1.07996 * 119.99955 * 199.18837 * 17 16 15 19 19 C 1.38811 * 120.00309 * 19.18399 * 17 16 15 20 20 N 1.31622 * 120.00115 * 28.44809 * 19 17 16 21 21 Si 1.86799 * 120.00173 * 208.72953 * 19 17 16 22 22 H 1.48493 * 109.47418 * 179.72460 * 21 19 17 23 23 H 1.48505 * 109.46957 * 299.72340 * 21 19 17 24 24 H 1.48496 * 109.47590 * 59.71887 * 21 19 17 25 25 C 1.47015 * 108.70145 * 335.55282 * 16 15 14 26 26 H 1.09004 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47325 * 299.99955 * 1 2 3 28 28 H 1.09003 * 109.47267 * 60.00580 * 1 2 3 29 29 H 1.08997 * 109.46855 * 239.99858 * 2 1 3 30 30 H 1.09002 * 109.46751 * 119.99521 * 2 1 3 31 31 H 1.08998 * 109.47331 * 59.99425 * 3 2 1 32 32 H 1.09001 * 109.47023 * 300.00173 * 3 2 1 33 33 H 1.07996 * 125.43594 * 179.72329 * 6 5 4 34 34 H 1.08002 * 127.01565 * 180.02562 * 7 6 5 35 35 H 0.96995 * 119.99726 * 0.02562 * 11 9 8 36 36 H 1.09002 * 111.00695 * 200.93354 * 14 12 11 37 37 H 1.09002 * 111.00621 * 324.75956 * 14 12 11 38 38 H 1.09007 * 110.49696 * 278.45294 * 15 14 12 39 39 H 1.09002 * 110.34671 * 156.06236 * 15 14 12 40 40 H 0.97002 * 119.99472 * 5.94122 * 20 19 17 41 41 H 1.09005 * 109.88112 * 120.70617 * 25 16 15 42 42 H 1.09002 * 109.88578 * 241.86686 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 8 4.3283 1.4392 1.0850 6 6 5.6255 1.4466 0.7406 7 6 5.7251 1.4490 -0.5975 8 6 4.3455 1.4424 -1.1053 9 6 3.9151 1.4426 -2.5149 10 8 2.7302 1.4376 -2.7888 11 7 4.8345 1.4484 -3.5003 12 6 4.4066 1.4480 -4.9014 13 1 3.5103 2.0541 -5.0321 14 6 5.5484 1.9506 -5.8241 15 6 6.3893 0.6597 -6.0059 16 7 5.3959 -0.4268 -6.0831 17 6 5.5867 -1.6412 -6.6864 18 1 4.7359 -2.2444 -6.9670 19 6 6.8735 -2.0970 -6.9375 20 7 7.8688 -1.7171 -6.1645 21 14 7.1942 -3.2433 -8.3772 22 1 8.6402 -3.5765 -8.4322 23 1 6.4053 -4.4894 -8.2030 24 1 6.7917 -2.5754 -9.6410 25 6 4.1688 0.0069 -5.3994 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.4565 1.4501 1.4304 34 1 6.6333 1.4543 -1.1819 35 1 5.7795 1.4519 -3.2817 36 1 5.1541 2.3015 -6.7778 37 1 6.1321 2.7300 -5.3343 38 1 7.0491 0.5105 -5.1512 39 1 6.9678 0.7111 -6.9283 40 1 7.6917 -1.1895 -5.3701 41 1 3.3303 -0.0111 -6.0957 42 1 3.9644 -0.6488 -4.5530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015990769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:33 Heat of formation + Delta-G solvation = -34.771126 kcal Electronic energy + Delta-G solvation = -23657.186053 eV Core-core repulsion = 20217.096392 eV Total energy + Delta-G solvation = -3440.089661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.59779 -40.88273 -39.01110 -36.25982 -35.61407 -34.22048 -33.30840 -31.30059 -30.94312 -29.25682 -27.43726 -26.34287 -24.59611 -22.81701 -22.41471 -22.17361 -21.33030 -20.82674 -19.58657 -18.95319 -17.46546 -17.23575 -16.96849 -16.38592 -16.09782 -15.95790 -15.77851 -15.54987 -15.29249 -14.99758 -14.64406 -14.18105 -13.99443 -13.89261 -13.72630 -13.60558 -12.90413 -12.65122 -12.63804 -12.48734 -12.43582 -12.29466 -12.22225 -11.99612 -11.89356 -11.67746 -11.61334 -11.06016 -10.87777 -10.53837 -10.17806 -9.58226 -9.04292 -8.36236 -5.38709 0.27983 1.08659 1.56650 1.64033 1.77071 1.83833 2.17223 2.29837 2.61832 3.15161 3.45841 3.51347 3.59105 3.75784 3.84142 3.90113 4.00862 4.06516 4.14625 4.29168 4.43171 4.46658 4.50676 4.64382 4.70342 4.75265 4.79821 4.86154 4.89229 4.92050 4.95066 5.01885 5.19499 5.21109 5.22644 5.33719 5.35444 5.50010 5.64896 5.99792 6.29523 6.48679 6.87373 7.14705 7.66400 8.24826 8.94732 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018790 B = 0.003848 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.818973 B = 7274.445441 C = 7579.328357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.045 4.045 4 C 0.073 3.927 5 O -0.177 6.177 6 C -0.024 4.024 7 C -0.205 4.205 8 C -0.268 4.268 9 C 0.585 3.415 10 O -0.571 6.571 11 N -0.701 5.701 12 C 0.147 3.853 13 H 0.104 0.896 14 C -0.121 4.121 15 C 0.145 3.855 16 N -0.620 5.620 17 C -0.355 4.355 18 H 0.050 0.950 19 C -0.071 4.071 20 N -0.936 5.936 21 Si 1.116 2.884 22 H -0.287 1.287 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.126 3.874 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.169 0.831 35 H 0.406 0.594 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.013 0.987 39 H 0.026 0.974 40 H 0.255 0.745 41 H 0.030 0.970 42 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 10.548 15.053 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.081 4.081 4 C 0.020 3.980 5 O -0.072 6.072 6 C -0.089 4.089 7 C -0.224 4.224 8 C -0.272 4.272 9 C 0.374 3.626 10 O -0.453 6.453 11 N -0.352 5.352 12 C 0.042 3.958 13 H 0.122 0.878 14 C -0.159 4.159 15 C 0.020 3.980 16 N -0.348 5.348 17 C -0.483 4.483 18 H 0.068 0.932 19 C -0.268 4.268 20 N -0.578 5.578 21 Si 0.940 3.060 22 H -0.213 1.213 23 H -0.204 1.204 24 H -0.205 1.205 25 C -0.001 4.001 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.268 0.732 34 H 0.186 0.814 35 H 0.242 0.758 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.030 0.970 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -6.545 9.668 14.238 18.413 hybrid contribution -0.388 0.286 0.606 0.774 sum -6.933 9.955 14.845 19.171 Atomic orbital electron populations 1.21710 0.93457 1.02476 1.02585 1.21406 0.97644 0.94637 1.01400 1.20496 0.82727 0.99463 1.05460 1.23054 0.94525 0.97327 0.83100 1.83782 1.17891 1.71116 1.34443 1.24669 0.83556 1.04138 0.96536 1.23141 0.96133 1.07509 0.95655 1.21251 0.95185 1.17736 0.93074 1.17546 0.85213 0.75125 0.84667 1.90707 1.17523 1.52395 1.84640 1.45702 1.10003 1.74191 1.05261 1.21759 0.98954 0.94899 0.80183 0.87765 1.23079 0.96023 0.96790 1.00046 1.21556 0.91652 0.87150 0.97655 1.44809 1.12444 1.13004 1.64498 1.19963 0.94496 0.97298 1.36561 0.93185 1.27156 0.91905 1.02849 1.04842 1.70910 1.34564 1.38370 1.13935 0.82850 0.75647 0.74257 0.73266 1.21289 1.20448 1.20548 1.21796 0.90040 0.94522 0.93699 0.92031 0.90597 0.93028 0.94431 0.91128 0.87430 0.88406 0.73229 0.81355 0.75801 0.88609 0.87596 0.96954 0.95556 0.93462 0.95171 0.98300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.11 -2.57 5.92 30.60 0.18 -2.39 16 3 C -0.04 -1.00 5.22 29.84 0.16 -0.85 16 4 C 0.07 1.89 6.63 25.26 0.17 2.06 16 5 O -0.18 -3.89 10.52 4.41 0.05 -3.85 16 6 C -0.02 -0.43 12.03 66.89 0.80 0.38 16 7 C -0.21 -4.68 10.60 23.65 0.25 -4.43 16 8 C -0.27 -7.79 6.31 -18.99 -0.12 -7.91 16 9 C 0.58 20.08 7.81 86.65 0.68 20.75 16 10 O -0.57 -22.10 14.58 -4.08 -0.06 -22.16 16 11 N -0.70 -23.15 5.11 -440.22 -2.25 -25.39 16 12 C 0.15 5.23 3.24 46.18 0.15 5.38 16 13 H 0.10 3.50 7.70 -2.39 -0.02 3.49 16 14 C -0.12 -3.96 6.65 32.06 0.21 -3.75 16 15 C 0.15 6.59 5.36 86.93 0.47 7.05 16 16 N -0.62 -32.59 3.26 -691.56 -2.26 -34.85 16 17 C -0.35 -20.93 10.00 84.03 0.84 -20.09 16 18 H 0.05 3.00 7.97 -2.91 -0.02 2.98 16 19 C -0.07 -4.12 5.09 84.86 0.43 -3.69 16 20 N -0.94 -57.22 13.00 21.65 0.28 -56.93 16 21 Si 1.12 51.82 30.00 68.60 2.06 53.88 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.13 5.76 6.98 86.73 0.61 6.36 16 26 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 2.56 6.49 -2.39 -0.02 2.54 16 33 H 0.25 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.17 3.29 7.74 -2.91 -0.02 3.27 16 35 H 0.41 12.19 7.79 -92.71 -0.72 11.47 16 36 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.01 0.60 6.81 -2.38 -0.02 0.59 16 39 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 40 H 0.26 15.74 6.19 -92.71 -0.57 15.17 16 41 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.00 -0.05 8.04 -2.39 -0.02 -0.07 16 Total: -1.00 -74.87 347.70 3.85 -71.03 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.49 Total: 21.34 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.54 Total: -3.07 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.22 Total: -117.18 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.01 Total: -26.00 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.06 Total: 53.88 kcal Total: -74.87 3.85 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015990769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.254 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds