Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47568 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99821 * 2 1 3 5 5 C 1.40363 * 126.64792 * 300.15233 * 4 2 1 6 6 C 1.35135 * 107.11375 * 180.28312 * 5 4 2 7 7 O 1.33928 * 108.76621 * 359.74551 * 6 5 4 8 8 C 1.34912 * 109.38949 * 359.97438 * 7 6 5 9 9 C 1.46655 * 125.98952 * 179.97438 * 8 7 6 10 10 O 1.21703 * 119.99810 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00110 * 359.75730 * 9 8 7 12 12 C 1.47424 * 125.64883 * 0.29500 * 11 9 8 13 13 C 1.54907 * 104.83241 * 204.09658 * 12 11 9 14 14 C 1.55162 * 101.58141 * 322.98988 * 13 12 11 15 15 H 1.08993 * 110.71586 * 276.96481 * 14 13 12 16 16 N 1.46498 * 110.72063 * 153.86786 * 14 13 12 17 17 C 1.36928 * 119.99974 * 155.00164 * 16 14 13 18 18 H 1.08003 * 120.00213 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00184 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00530 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99800 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47223 * 89.99872 * 21 19 17 23 23 H 1.48499 * 109.47321 * 209.99902 * 21 19 17 24 24 H 1.48501 * 109.47326 * 329.99825 * 21 19 17 25 25 C 1.47024 * 125.64632 * 179.97438 * 11 9 8 26 26 H 1.09003 * 109.46972 * 300.00104 * 1 2 3 27 27 H 1.09001 * 109.47186 * 59.99838 * 1 2 3 28 28 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47426 * 240.00179 * 2 1 3 30 30 H 1.09003 * 109.46601 * 59.99674 * 3 2 1 31 31 H 1.08996 * 109.47380 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46999 * 300.00276 * 3 2 1 33 33 H 1.07991 * 126.44221 * 0.02562 * 5 4 2 34 34 H 1.07995 * 125.61624 * 179.78357 * 6 5 4 35 35 H 1.09006 * 110.36494 * 322.93174 * 12 11 9 36 36 H 1.08999 * 110.36611 * 85.25553 * 12 11 9 37 37 H 1.08996 * 111.00729 * 81.06408 * 13 12 11 38 38 H 1.08998 * 111.00349 * 204.87784 * 13 12 11 39 39 H 0.97000 * 119.99653 * 334.99699 * 16 14 13 40 40 H 0.96994 * 120.00189 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.87750 * 298.38844 * 25 11 9 42 42 H 1.08995 * 109.88742 * 59.55562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.7782 -0.3562 2.5647 6 6 2.4219 -1.2534 3.3438 7 8 3.0486 -2.1367 2.5560 8 6 2.8200 -1.8253 1.2634 9 6 3.3338 -2.5521 0.0979 10 8 3.0584 -2.1734 -1.0254 11 7 4.1155 -3.6364 0.2707 12 6 4.5253 -4.2020 1.5690 13 6 5.8347 -4.9738 1.2697 14 6 5.5352 -5.5628 -0.1342 15 1 4.9593 -6.4844 -0.0508 16 7 6.7778 -5.7953 -0.8745 17 6 6.8176 -6.7391 -1.8658 18 1 5.9330 -7.3117 -2.1022 19 6 7.9948 -6.9591 -2.5678 20 7 8.0334 -7.8666 -3.5203 21 14 9.5244 -5.9672 -2.1604 22 1 10.3079 -6.6726 -1.1146 23 1 10.3548 -5.8138 -3.3819 24 1 9.1266 -4.6265 -1.6608 25 6 4.6954 -4.4548 -0.8043 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.1839 0.4788 2.9048 34 1 2.4291 -1.2578 4.4237 35 1 4.7111 -3.4046 2.2886 36 1 3.7612 -4.8826 1.9445 37 1 6.6882 -4.2968 1.2354 38 1 5.9966 -5.7665 2.0002 39 1 7.5722 -5.2807 -0.6625 40 1 8.8559 -8.0200 -4.0110 41 1 3.8996 -4.8999 -1.4015 42 1 5.3350 -3.8382 -1.4357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019279758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -7.273541 kcal Electronic energy + Delta-G solvation = -23561.894761 eV Core-core repulsion = 20122.997485 eV Total energy + Delta-G solvation = -3438.897276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.87325 -39.62095 -37.57069 -36.14836 -34.28110 -32.02298 -31.70174 -30.24310 -29.70309 -27.81720 -27.24237 -24.59582 -22.93669 -22.75714 -22.04856 -20.68368 -19.96441 -19.25146 -17.93357 -17.24254 -16.63649 -16.32247 -15.90073 -15.32645 -14.86474 -14.53266 -14.05043 -13.99541 -13.84311 -13.34269 -13.30776 -13.08097 -12.81402 -12.74401 -12.49071 -12.35624 -12.16630 -11.90414 -11.38888 -11.36033 -11.35384 -11.02205 -10.92563 -10.80774 -10.50303 -10.11550 -9.87076 -9.81748 -9.65561 -9.05182 -8.84154 -8.39079 -7.41634 -5.84293 -3.22595 0.99522 2.19799 2.58504 3.16874 3.22004 3.33749 3.36284 3.42213 4.42997 4.49245 4.52641 4.63051 4.81227 5.02742 5.09541 5.11110 5.11927 5.23583 5.40122 5.43990 5.48784 5.49939 5.57400 5.60922 5.69705 5.79916 5.82065 5.83983 5.89640 5.95248 6.14043 6.15849 6.18863 6.21628 6.29688 6.42174 6.53238 6.71810 6.80471 7.59499 7.89461 8.15484 8.34190 9.10376 9.82469 10.00184 11.33343 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.003557 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.828113 B = 7870.497183 C = 8316.607862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.082 4.082 5 C -0.219 4.219 6 C -0.016 4.016 7 O -0.159 6.159 8 C -0.071 4.071 9 C 0.608 3.392 10 O -0.522 6.522 11 N -0.603 5.603 12 C 0.102 3.898 13 C -0.144 4.144 14 C 0.177 3.823 15 H 0.079 0.921 16 N -0.736 5.736 17 C -0.255 4.255 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.083 3.917 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.152 0.848 34 H 0.207 0.793 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.067 0.933 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 15.806 16.181 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.085 4.085 5 C -0.238 4.238 6 C -0.085 4.085 7 O -0.054 6.054 8 C -0.123 4.123 9 C 0.397 3.603 10 O -0.401 6.401 11 N -0.336 5.336 12 C -0.021 4.021 13 C -0.183 4.183 14 C 0.066 3.934 15 H 0.096 0.904 16 N -0.377 5.377 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.042 4.042 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.169 0.831 34 H 0.224 0.776 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.034 15.566 15.442 25.508 hybrid contribution 1.013 0.868 0.414 1.397 sum -12.021 16.435 15.856 25.807 Atomic orbital electron populations 1.21759 0.94309 1.01866 1.01524 1.20016 0.95695 0.95772 0.95657 1.21763 1.01214 0.94985 1.01528 1.20556 0.97420 0.94524 0.95966 1.21632 1.06495 1.03399 0.92278 1.24334 0.96660 0.90552 0.96997 1.84193 1.58365 1.46963 1.15906 1.21937 1.07421 1.00689 0.82210 1.16241 0.78615 0.79470 0.86006 1.90805 1.59665 1.66996 1.22616 1.48462 1.48267 1.27087 1.09759 1.22424 0.96695 0.97657 0.85350 1.23137 0.96281 0.99868 0.99056 1.21185 0.88467 0.95021 0.88772 0.90352 1.42723 1.07477 1.45248 1.42235 1.19093 0.98394 1.11777 1.09146 0.88905 1.24683 0.97584 0.98506 0.97869 1.69695 1.27364 1.35462 1.25002 0.86568 0.84261 0.80150 0.77646 1.20916 1.21578 1.20281 1.23249 0.97619 0.93476 0.89874 0.92939 0.92227 0.92680 0.87081 0.92942 0.92694 0.92209 0.83051 0.77627 0.90220 0.91105 0.90772 0.89561 0.80227 0.92873 0.91466 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.09 37.15 0.34 -1.01 16 2 C -0.05 -0.63 3.19 -91.77 -0.29 -0.92 16 3 C -0.14 -1.37 9.09 37.16 0.34 -1.03 16 4 C -0.08 -1.01 4.87 -104.43 -0.51 -1.52 16 5 C -0.22 -2.05 10.41 -39.89 -0.42 -2.47 16 6 C -0.02 -0.13 12.08 29.63 0.36 0.22 16 7 O -0.16 -1.85 7.85 5.01 0.04 -1.81 16 8 C -0.07 -0.99 6.93 -36.80 -0.25 -1.25 16 9 C 0.61 10.24 7.82 -12.86 -0.10 10.14 16 10 O -0.52 -10.10 14.73 5.19 0.08 -10.03 16 11 N -0.60 -9.75 3.33 -172.06 -0.57 -10.32 16 12 C 0.10 1.32 6.17 -2.53 -0.02 1.31 16 13 C -0.14 -2.04 6.72 -24.58 -0.17 -2.21 16 14 C 0.18 3.23 3.60 -66.09 -0.24 2.99 16 15 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 16 N -0.74 -16.70 4.96 -51.65 -0.26 -16.96 16 17 C -0.25 -6.96 10.44 -15.06 -0.16 -7.12 16 18 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -28.71 13.97 55.49 0.78 -27.94 16 21 Si 0.88 21.68 27.73 -169.99 -4.71 16.97 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 C 0.08 1.52 6.63 -3.06 -0.02 1.50 16 26 H 0.05 0.44 8.05 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.11 1.64 5.48 -51.93 -0.28 1.35 16 30 H 0.05 0.44 8.06 -51.93 -0.42 0.03 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.36 8.15 5.62 -40.82 -0.23 7.92 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -32.55 342.87 -7.04 -39.59 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.32 Total: 6.51 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.23 Total: -1.18 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.05 Total: -55.22 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.12 Total: -11.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.55 -7.04 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019279758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.314 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds