Wall clock time and date at job start Tue Mar 31 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47568 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99821 * 2 1 3 5 5 C 1.40363 * 126.64792 * 300.15233 * 4 2 1 6 6 C 1.35135 * 107.11375 * 180.28312 * 5 4 2 7 7 O 1.33928 * 108.76621 * 359.74551 * 6 5 4 8 8 C 1.34912 * 109.38949 * 359.97438 * 7 6 5 9 9 C 1.46655 * 125.98952 * 179.97438 * 8 7 6 10 10 O 1.21703 * 119.99810 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00110 * 359.75730 * 9 8 7 12 12 C 1.47424 * 125.64883 * 0.29500 * 11 9 8 13 13 C 1.54907 * 104.83241 * 204.09658 * 12 11 9 14 14 C 1.55162 * 101.58141 * 322.98988 * 13 12 11 15 15 H 1.08993 * 110.71586 * 276.96481 * 14 13 12 16 16 N 1.46498 * 110.72063 * 153.86786 * 14 13 12 17 17 C 1.36928 * 119.99974 * 155.00164 * 16 14 13 18 18 H 1.08003 * 120.00213 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00184 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00530 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99800 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47223 * 89.99872 * 21 19 17 23 23 H 1.48499 * 109.47321 * 209.99902 * 21 19 17 24 24 H 1.48501 * 109.47326 * 329.99825 * 21 19 17 25 25 C 1.47024 * 125.64632 * 179.97438 * 11 9 8 26 26 H 1.09003 * 109.46972 * 300.00104 * 1 2 3 27 27 H 1.09001 * 109.47186 * 59.99838 * 1 2 3 28 28 H 1.08996 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47426 * 240.00179 * 2 1 3 30 30 H 1.09003 * 109.46601 * 59.99674 * 3 2 1 31 31 H 1.08996 * 109.47380 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46999 * 300.00276 * 3 2 1 33 33 H 1.07991 * 126.44221 * 0.02562 * 5 4 2 34 34 H 1.07995 * 125.61624 * 179.78357 * 6 5 4 35 35 H 1.09006 * 110.36494 * 322.93174 * 12 11 9 36 36 H 1.08999 * 110.36611 * 85.25553 * 12 11 9 37 37 H 1.08996 * 111.00729 * 81.06408 * 13 12 11 38 38 H 1.08998 * 111.00349 * 204.87784 * 13 12 11 39 39 H 0.97000 * 119.99653 * 334.99699 * 16 14 13 40 40 H 0.96994 * 120.00189 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.87750 * 298.38844 * 25 11 9 42 42 H 1.08995 * 109.88742 * 59.55562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.7782 -0.3562 2.5647 6 6 2.4219 -1.2534 3.3438 7 8 3.0486 -2.1367 2.5560 8 6 2.8200 -1.8253 1.2634 9 6 3.3338 -2.5521 0.0979 10 8 3.0584 -2.1734 -1.0254 11 7 4.1155 -3.6364 0.2707 12 6 4.5253 -4.2020 1.5690 13 6 5.8347 -4.9738 1.2697 14 6 5.5352 -5.5628 -0.1342 15 1 4.9593 -6.4844 -0.0508 16 7 6.7778 -5.7953 -0.8745 17 6 6.8176 -6.7391 -1.8658 18 1 5.9330 -7.3117 -2.1022 19 6 7.9948 -6.9591 -2.5678 20 7 8.0334 -7.8666 -3.5203 21 14 9.5244 -5.9672 -2.1604 22 1 10.3079 -6.6726 -1.1146 23 1 10.3548 -5.8138 -3.3819 24 1 9.1266 -4.6265 -1.6608 25 6 4.6954 -4.4548 -0.8043 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.1839 0.4788 2.9048 34 1 2.4291 -1.2578 4.4237 35 1 4.7111 -3.4046 2.2886 36 1 3.7612 -4.8826 1.9445 37 1 6.6882 -4.2968 1.2354 38 1 5.9966 -5.7665 2.0002 39 1 7.5722 -5.2807 -0.6625 40 1 8.8559 -8.0200 -4.0110 41 1 3.8996 -4.8999 -1.4015 42 1 5.3350 -3.8382 -1.4357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019279758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:40 Heat of formation + Delta-G solvation = -28.795724 kcal Electronic energy + Delta-G solvation = -23562.828032 eV Core-core repulsion = 20122.997485 eV Total energy + Delta-G solvation = -3439.830548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.71006 -40.91135 -38.91364 -37.08660 -36.03796 -33.65320 -32.74327 -31.68082 -30.78954 -29.23757 -28.02284 -26.09852 -24.44092 -23.72340 -23.08679 -21.93994 -21.18890 -20.29953 -19.74199 -18.53559 -17.78131 -17.30940 -17.02497 -16.56786 -16.28934 -15.87828 -15.52797 -15.22263 -14.85357 -14.81544 -14.41421 -14.13272 -14.08432 -13.89614 -13.86853 -13.40012 -13.34443 -13.07204 -13.01476 -12.62782 -12.41389 -12.23015 -12.19903 -12.17075 -11.98050 -11.87101 -11.60363 -11.08665 -10.96506 -10.65424 -9.94320 -9.49513 -9.42411 -8.05400 -5.41634 0.03892 1.37245 1.40850 1.44344 1.47221 1.58848 2.05485 2.10213 2.46125 3.23059 3.46066 3.51380 3.65865 3.70060 3.84048 3.97014 4.24360 4.27270 4.27416 4.32744 4.39955 4.43631 4.53246 4.63210 4.77278 4.77558 4.82209 4.91734 4.93776 4.99404 5.03242 5.10972 5.11428 5.22279 5.28302 5.34493 5.42605 5.51026 5.73624 5.94296 6.18193 6.38336 6.90074 7.02744 7.76018 7.95132 9.15610 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.003557 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.828113 B = 7870.497183 C = 8316.607862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.229 4.229 6 C 0.014 3.986 7 O -0.164 6.164 8 C -0.112 4.112 9 C 0.601 3.399 10 O -0.565 6.565 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.130 4.130 14 C 0.170 3.830 15 H 0.077 0.923 16 N -0.738 5.738 17 C -0.239 4.239 18 H 0.060 0.940 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.298 1.298 24 H -0.256 1.256 25 C 0.092 3.908 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.181 0.819 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.369 0.631 40 H 0.259 0.741 41 H 0.048 0.952 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.479 18.185 20.477 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.079 4.079 3 C -0.189 4.189 4 C -0.081 4.081 5 C -0.248 4.248 6 C -0.055 4.055 7 O -0.060 6.060 8 C -0.163 4.163 9 C 0.392 3.608 10 O -0.447 6.447 11 N -0.339 5.339 12 C -0.015 4.015 13 C -0.168 4.168 14 C 0.060 3.940 15 H 0.095 0.905 16 N -0.380 5.380 17 C -0.370 4.370 18 H 0.078 0.922 19 C -0.251 4.251 20 N -0.630 5.630 21 Si 0.782 3.218 22 H -0.196 1.196 23 H -0.225 1.225 24 H -0.181 1.181 25 C -0.033 4.033 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.198 0.802 34 H 0.274 0.726 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.203 0.797 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.518 17.970 19.809 29.967 hybrid contribution 0.972 0.179 -0.848 1.302 sum -12.546 18.148 18.960 29.091 Atomic orbital electron populations 1.21717 0.92663 1.01429 1.03048 1.20024 0.97088 0.96504 0.94322 1.21723 1.00209 0.93911 1.03064 1.20874 0.96027 0.93612 0.97549 1.21960 1.07468 1.04825 0.90545 1.25395 0.93320 0.88177 0.98610 1.84152 1.58987 1.47888 1.14961 1.21333 1.10416 1.02088 0.82488 1.16701 0.78085 0.79291 0.86720 1.90777 1.61162 1.68125 1.24617 1.48500 1.48268 1.26954 1.10182 1.22598 0.96420 0.98344 0.84108 1.23088 0.96972 1.00487 0.96274 1.21370 0.86780 0.95000 0.90838 0.90540 1.42670 1.09279 1.44372 1.41700 1.19058 0.97042 1.11425 1.09455 0.92177 1.25512 1.01265 1.00192 0.98167 1.69879 1.28218 1.38013 1.26936 0.85422 0.79717 0.79456 0.77224 1.19620 1.22508 1.18081 1.22833 0.96733 0.93388 0.90390 0.90637 0.91462 0.94076 0.90895 0.90625 0.94203 0.91441 0.80157 0.72626 0.88169 0.89233 0.90554 0.86810 0.79723 0.93220 0.93325 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.09 71.98 0.65 -1.76 16 2 C -0.06 -1.42 3.19 -11.54 -0.04 -1.46 16 3 C -0.13 -2.46 9.09 71.98 0.65 -1.80 16 4 C -0.08 -1.79 4.87 -19.74 -0.10 -1.89 16 5 C -0.23 -3.35 10.41 22.07 0.23 -3.12 16 6 C 0.01 0.17 12.08 67.10 0.81 0.98 16 7 O -0.16 -3.28 7.85 -4.99 -0.04 -3.32 16 8 C -0.11 -3.03 6.93 24.07 0.17 -2.87 16 9 C 0.60 20.84 7.82 86.44 0.68 21.52 16 10 O -0.56 -23.43 14.73 -4.36 -0.06 -23.49 16 11 N -0.61 -19.75 3.33 -816.48 -2.72 -22.46 16 12 C 0.11 2.53 6.17 86.85 0.54 3.07 16 13 C -0.13 -3.34 6.72 31.99 0.21 -3.13 16 14 C 0.17 6.19 3.60 46.19 0.17 6.36 16 15 H 0.08 2.81 8.09 -2.39 -0.02 2.80 16 16 N -0.74 -33.55 4.96 -317.31 -1.57 -35.13 16 17 C -0.24 -13.46 10.44 84.04 0.88 -12.58 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 20 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 21 Si 0.95 45.17 27.73 68.60 1.90 47.08 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.26 -11.08 6.52 99.48 0.65 -10.43 16 25 C 0.09 3.54 6.63 86.73 0.58 4.12 16 26 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 2.29 5.48 -2.39 -0.01 2.28 16 30 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.26 0.24 8.06 -2.91 -0.02 0.21 16 35 H 0.10 2.03 6.21 -2.38 -0.01 2.01 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.98 8.01 -2.39 -0.02 1.96 16 38 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.37 16.04 5.62 -92.71 -0.52 15.52 16 40 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 2.02 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -76.27 342.87 4.15 -72.12 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.44 Total: 23.33 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.90 Total: 4.40 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -3.99 Total: -120.12 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.10 Total: -26.81 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Total: -76.27 4.15 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019279758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.328 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds