Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47183 * 2 1 4 4 C 1.50700 * 109.47221 * 120.00001 * 2 1 3 5 5 O 1.33657 * 125.80016 * 300.18705 * 4 2 1 6 6 C 1.34218 * 110.90398 * 180.28815 * 5 4 2 7 7 C 1.34182 * 109.12600 * 359.72730 * 6 5 4 8 8 C 1.36416 * 125.80479 * 120.00051 * 4 2 1 9 9 C 1.47382 * 127.18772 * 0.02562 * 8 4 2 10 10 O 1.21612 * 120.00116 * 5.36451 * 9 8 4 11 11 N 1.34780 * 120.00101 * 185.37121 * 9 8 4 12 12 C 1.47415 * 125.65048 * 175.21356 * 11 9 8 13 13 C 1.54907 * 104.93130 * 204.15457 * 12 11 9 14 14 C 1.55162 * 101.57900 * 322.93784 * 13 12 11 15 15 H 1.09006 * 110.71513 * 277.13655 * 14 13 12 16 16 N 1.46500 * 110.71964 * 153.86627 * 14 13 12 17 17 C 1.36942 * 120.00011 * 155.00047 * 16 14 13 18 18 H 1.07999 * 119.99448 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00123 * 179.97438 * 17 16 14 20 20 N 1.31627 * 119.99646 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00099 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46819 * 90.00206 * 21 19 17 23 23 H 1.48505 * 109.47157 * 209.99681 * 21 19 17 24 24 H 1.48497 * 109.47263 * 330.00010 * 21 19 17 25 25 C 1.47287 * 125.78950 * 355.21239 * 11 9 8 26 26 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47000 * 300.00014 * 1 2 3 28 28 H 1.08995 * 109.47630 * 59.99872 * 1 2 3 29 29 H 1.08995 * 109.47296 * 240.00086 * 2 1 3 30 30 H 1.09000 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46942 * 300.00549 * 3 2 1 32 32 H 1.09001 * 109.46848 * 60.00305 * 3 2 1 33 33 H 1.08007 * 125.43498 * 179.72787 * 6 5 4 34 34 H 1.08005 * 127.01891 * 180.02562 * 7 6 5 35 35 H 1.09006 * 110.36577 * 85.25827 * 12 11 9 36 36 H 1.09007 * 110.37138 * 323.04732 * 12 11 9 37 37 H 1.08998 * 111.00330 * 81.00821 * 13 12 11 38 38 H 1.08998 * 111.00711 * 204.86517 * 13 12 11 39 39 H 0.96996 * 120.00035 * 334.99905 * 16 14 13 40 40 H 0.96996 * 119.99422 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.85737 * 59.50313 * 25 11 9 42 42 H 1.09001 * 110.00078 * 298.43277 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7790 -0.3583 2.4947 6 6 2.3801 -1.1955 3.3545 7 6 3.0461 -2.1327 2.6628 8 6 2.8199 -1.8242 1.2433 9 6 3.3410 -2.5602 0.0776 10 8 3.1578 -2.1297 -1.0449 11 7 4.0205 -3.7105 0.2556 12 6 4.5080 -4.5954 -0.8179 13 6 4.6352 -5.9910 -0.1578 14 6 5.1367 -5.6192 1.2627 15 1 6.2163 -5.4687 1.2633 16 7 4.7547 -6.6482 2.2330 17 6 5.4832 -6.8108 3.3811 18 1 6.3396 -6.1807 3.5709 19 6 5.1210 -7.7854 4.3007 20 7 4.0770 -8.5530 4.0694 21 14 6.1152 -8.0077 5.8665 22 1 5.5545 -7.1430 6.9357 23 1 6.0527 -9.4282 6.2951 24 1 7.5285 -7.6287 5.6135 25 6 4.4005 -4.2944 1.5533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.3349 -1.1258 4.4314 34 1 3.6289 -2.9475 3.0664 35 1 5.4794 -4.2558 -1.1775 36 1 3.7908 -4.6276 -1.6381 37 1 3.6678 -6.4911 -0.1121 38 1 5.3668 -6.6059 -0.6819 39 1 3.9858 -7.2143 2.0622 40 1 3.8242 -9.2342 4.7119 41 1 3.5076 -4.4891 2.1475 42 1 5.0611 -3.6131 2.0896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019848688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = -9.801235 kcal Electronic energy + Delta-G solvation = -23691.510470 eV Core-core repulsion = 20252.503585 eV Total energy + Delta-G solvation = -3439.006885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54234 -39.52339 -37.29876 -35.52221 -34.07993 -32.95508 -31.41561 -29.74393 -29.01895 -27.51627 -27.31688 -24.65417 -23.46273 -22.51920 -21.66477 -20.70573 -20.03448 -18.59729 -17.34836 -17.18679 -16.23775 -16.08463 -15.81068 -15.30911 -14.87646 -14.58352 -14.28853 -13.82042 -13.50511 -13.36845 -13.23722 -12.89152 -12.73084 -12.68106 -12.38412 -12.35415 -11.88401 -11.56148 -11.37237 -11.35095 -11.06738 -11.03988 -10.86144 -10.75260 -10.34626 -10.11929 -9.85287 -9.68638 -9.64720 -9.04713 -8.62374 -8.24375 -7.14292 -5.89296 -3.20592 1.44773 2.18198 2.83599 3.28891 3.36023 3.42133 3.43500 3.53253 4.42555 4.48055 4.73078 4.77313 4.97017 4.98246 5.14089 5.18479 5.30054 5.35446 5.46005 5.52611 5.55416 5.63228 5.64710 5.64900 5.76185 5.79906 5.83626 6.01732 6.05581 6.06804 6.09607 6.20389 6.23593 6.33681 6.40307 6.48464 6.60437 6.80750 7.11298 7.58795 7.81288 8.27899 8.40112 9.40035 9.93720 10.28706 11.32560 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.004022 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.950313 B = 6960.203204 C = 7904.584912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C -0.144 4.144 4 C 0.078 3.922 5 O -0.175 6.175 6 C -0.048 4.048 7 C -0.188 4.188 8 C -0.235 4.235 9 C 0.603 3.397 10 O -0.557 6.557 11 N -0.604 5.604 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.170 3.830 15 H 0.069 0.931 16 N -0.712 5.712 17 C -0.251 4.251 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.070 3.930 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.207 0.793 34 H 0.171 0.829 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.078 0.922 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 15.701 -6.545 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 C -0.201 4.201 4 C 0.025 3.975 5 O -0.071 6.071 6 C -0.113 4.113 7 C -0.207 4.207 8 C -0.239 4.239 9 C 0.394 3.606 10 O -0.439 6.439 11 N -0.337 5.337 12 C -0.011 4.011 13 C -0.181 4.181 14 C 0.058 3.942 15 H 0.087 0.913 16 N -0.352 5.352 17 C -0.382 4.382 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.056 4.056 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.224 0.776 34 H 0.189 0.811 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.158 16.170 -6.872 18.055 hybrid contribution 0.408 -0.643 1.258 1.470 sum -3.751 15.527 -5.614 16.932 Atomic orbital electron populations 1.21845 0.93627 1.02511 1.02332 1.20275 0.96388 0.96260 0.92189 1.21823 1.01591 0.94431 1.02288 1.22719 0.96442 0.94281 0.84077 1.83709 1.59596 1.48753 1.15088 1.23920 0.99596 0.92326 0.95483 1.23565 1.03788 1.01934 0.91419 1.21098 1.08346 1.00478 0.94011 1.16849 0.77224 0.79363 0.87189 1.90659 1.60526 1.67813 1.24918 1.48332 1.54354 1.21545 1.09456 1.22177 0.99131 0.89295 0.90513 1.23114 1.02549 0.95073 0.97378 1.21226 0.96940 0.87639 0.88398 0.91310 1.42385 1.35008 1.37668 1.20166 1.19263 1.08218 1.14659 0.96038 0.90915 1.24773 0.98164 0.98434 0.99039 1.69665 1.27537 1.23551 1.36825 0.86191 0.79472 0.77111 0.83390 1.21591 1.21695 1.20625 1.23644 1.00316 0.97328 0.84266 0.92219 0.92313 0.91526 0.85227 0.92241 0.91550 0.92356 0.77615 0.81147 0.91652 0.90894 0.90597 0.89968 0.77829 0.93298 0.90419 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.17 37.15 0.34 -1.15 16 2 C -0.03 -0.40 3.24 -91.77 -0.30 -0.70 16 3 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 4 C 0.08 1.12 5.88 -34.97 -0.21 0.91 16 5 O -0.18 -2.35 10.52 7.63 0.08 -2.27 16 6 C -0.05 -0.59 12.03 29.30 0.35 -0.24 16 7 C -0.19 -2.76 9.43 -37.46 -0.35 -3.11 16 8 C -0.24 -3.78 6.24 -103.28 -0.64 -4.42 16 9 C 0.60 10.58 7.84 -12.54 -0.10 10.48 16 10 O -0.56 -10.49 14.82 5.27 0.08 -10.42 16 11 N -0.60 -10.11 3.33 -171.59 -0.57 -10.68 16 12 C 0.11 1.67 6.88 -2.54 -0.02 1.65 16 13 C -0.14 -2.21 6.71 -24.58 -0.17 -2.38 16 14 C 0.17 3.13 3.61 -66.10 -0.24 2.89 16 15 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 16 N -0.71 -16.55 5.15 -51.65 -0.27 -16.82 16 17 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 21 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.07 1.21 4.78 -2.92 -0.01 1.19 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.13 1.82 5.54 -51.93 -0.29 1.53 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.21 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.17 2.54 4.92 -52.48 -0.26 2.28 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.39 9.68 7.76 -40.82 -0.32 9.36 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.08 1.45 6.65 -51.93 -0.35 1.11 16 42 H 0.06 1.02 7.14 -51.93 -0.37 0.65 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -30.31 343.75 -7.23 -37.54 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.19 Total: 10.14 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.25 Total: -2.91 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.11 Total: -53.54 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.16 Total: -12.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.31 -7.23 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019848688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.741 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds