Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47183 * 2 1 4 4 C 1.50700 * 109.47221 * 120.00001 * 2 1 3 5 5 O 1.33657 * 125.80016 * 300.18705 * 4 2 1 6 6 C 1.34218 * 110.90398 * 180.28815 * 5 4 2 7 7 C 1.34182 * 109.12600 * 359.72730 * 6 5 4 8 8 C 1.36416 * 125.80479 * 120.00051 * 4 2 1 9 9 C 1.47382 * 127.18772 * 0.02562 * 8 4 2 10 10 O 1.21612 * 120.00116 * 5.36451 * 9 8 4 11 11 N 1.34780 * 120.00101 * 185.37121 * 9 8 4 12 12 C 1.47415 * 125.65048 * 175.21356 * 11 9 8 13 13 C 1.54907 * 104.93130 * 204.15457 * 12 11 9 14 14 C 1.55162 * 101.57900 * 322.93784 * 13 12 11 15 15 H 1.09006 * 110.71513 * 277.13655 * 14 13 12 16 16 N 1.46500 * 110.71964 * 153.86627 * 14 13 12 17 17 C 1.36942 * 120.00011 * 155.00047 * 16 14 13 18 18 H 1.07999 * 119.99448 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00123 * 179.97438 * 17 16 14 20 20 N 1.31627 * 119.99646 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00099 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46819 * 90.00206 * 21 19 17 23 23 H 1.48505 * 109.47157 * 209.99681 * 21 19 17 24 24 H 1.48497 * 109.47263 * 330.00010 * 21 19 17 25 25 C 1.47287 * 125.78950 * 355.21239 * 11 9 8 26 26 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47000 * 300.00014 * 1 2 3 28 28 H 1.08995 * 109.47630 * 59.99872 * 1 2 3 29 29 H 1.08995 * 109.47296 * 240.00086 * 2 1 3 30 30 H 1.09000 * 109.47349 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46942 * 300.00549 * 3 2 1 32 32 H 1.09001 * 109.46848 * 60.00305 * 3 2 1 33 33 H 1.08007 * 125.43498 * 179.72787 * 6 5 4 34 34 H 1.08005 * 127.01891 * 180.02562 * 7 6 5 35 35 H 1.09006 * 110.36577 * 85.25827 * 12 11 9 36 36 H 1.09007 * 110.37138 * 323.04732 * 12 11 9 37 37 H 1.08998 * 111.00330 * 81.00821 * 13 12 11 38 38 H 1.08998 * 111.00711 * 204.86517 * 13 12 11 39 39 H 0.96996 * 120.00035 * 334.99905 * 16 14 13 40 40 H 0.96996 * 119.99422 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.85737 * 59.50313 * 25 11 9 42 42 H 1.09001 * 110.00078 * 298.43277 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7790 -0.3583 2.4947 6 6 2.3801 -1.1955 3.3545 7 6 3.0461 -2.1327 2.6628 8 6 2.8199 -1.8242 1.2433 9 6 3.3410 -2.5602 0.0776 10 8 3.1578 -2.1297 -1.0449 11 7 4.0205 -3.7105 0.2556 12 6 4.5080 -4.5954 -0.8179 13 6 4.6352 -5.9910 -0.1578 14 6 5.1367 -5.6192 1.2627 15 1 6.2163 -5.4687 1.2633 16 7 4.7547 -6.6482 2.2330 17 6 5.4832 -6.8108 3.3811 18 1 6.3396 -6.1807 3.5709 19 6 5.1210 -7.7854 4.3007 20 7 4.0770 -8.5530 4.0694 21 14 6.1152 -8.0077 5.8665 22 1 5.5545 -7.1430 6.9357 23 1 6.0527 -9.4282 6.2951 24 1 7.5285 -7.6287 5.6135 25 6 4.4005 -4.2944 1.5533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.3349 -1.1258 4.4314 34 1 3.6289 -2.9475 3.0664 35 1 5.4794 -4.2558 -1.1775 36 1 3.7908 -4.6276 -1.6381 37 1 3.6678 -6.4911 -0.1121 38 1 5.3668 -6.6059 -0.6819 39 1 3.9858 -7.2143 2.0622 40 1 3.8242 -9.2342 4.7119 41 1 3.5076 -4.4891 2.1475 42 1 5.0611 -3.6131 2.0896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019848688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -27.960780 kcal Electronic energy + Delta-G solvation = -23692.297927 eV Core-core repulsion = 20252.503585 eV Total energy + Delta-G solvation = -3439.794342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62867 -40.87939 -38.71880 -36.48082 -35.82345 -34.15108 -33.13219 -31.20705 -30.08444 -29.07835 -28.10718 -26.18567 -25.08825 -23.52679 -22.90366 -22.02870 -21.35549 -19.74021 -19.24085 -18.42641 -17.48708 -17.34261 -17.08730 -16.55852 -16.29866 -15.82384 -15.49130 -15.21938 -15.19468 -14.81022 -14.30253 -14.08492 -14.02648 -13.78441 -13.66115 -13.34348 -13.12265 -13.08383 -12.85837 -12.50533 -12.30030 -12.26421 -12.22279 -12.10657 -12.00466 -11.74870 -11.63059 -11.04979 -10.89680 -10.84136 -9.82460 -9.47757 -9.07386 -7.94163 -5.24636 0.28696 1.08718 1.51331 1.51756 1.60189 1.75700 2.03367 2.23641 2.57628 3.36873 3.42647 3.45904 3.80432 3.88041 3.90276 3.90965 4.01062 4.11096 4.30381 4.32525 4.35259 4.50097 4.56158 4.62883 4.73246 4.74307 4.83556 4.86585 4.87584 4.96029 4.98398 5.11087 5.14255 5.21764 5.25863 5.27197 5.36029 5.41644 5.54935 6.02218 6.26187 6.45506 7.05684 7.34092 8.04821 8.29250 9.28743 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.004022 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.950313 B = 6960.203204 C = 7904.584912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C -0.139 4.139 4 C 0.082 3.918 5 O -0.172 6.172 6 C -0.030 4.030 7 C -0.213 4.213 8 C -0.268 4.268 9 C 0.597 3.403 10 O -0.576 6.576 11 N -0.608 5.608 12 C 0.113 3.887 13 C -0.130 4.130 14 C 0.164 3.836 15 H 0.075 0.925 16 N -0.723 5.723 17 C -0.244 4.244 18 H 0.082 0.918 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.300 1.300 24 H -0.268 1.268 25 C 0.087 3.913 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.247 0.753 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 17.492 -6.370 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 C -0.196 4.196 4 C 0.028 3.972 5 O -0.068 6.068 6 C -0.095 4.095 7 C -0.232 4.232 8 C -0.272 4.272 9 C 0.389 3.611 10 O -0.459 6.459 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.168 4.168 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.362 5.362 17 C -0.375 4.375 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.227 1.227 24 H -0.193 1.193 25 C -0.038 4.038 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.263 0.737 34 H 0.181 0.819 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.813 18.003 -6.724 19.592 hybrid contribution 0.301 -1.125 1.139 1.629 sum -3.512 16.878 -5.585 18.122 Atomic orbital electron populations 1.21828 0.92024 1.02122 1.03851 1.20343 0.97678 0.97094 0.90345 1.21802 1.00926 0.93050 1.03789 1.23112 0.95420 0.93667 0.84972 1.83744 1.59419 1.48737 1.14852 1.24616 0.97378 0.90679 0.96783 1.23551 1.05443 1.03033 0.91181 1.21207 1.10082 1.01722 0.94232 1.17125 0.77017 0.79469 0.87499 1.90641 1.61289 1.68321 1.25683 1.48377 1.54382 1.21639 1.09562 1.22273 1.00103 0.88426 0.90105 1.23019 1.02426 0.95729 0.95668 1.21417 0.97366 0.86987 0.88895 0.90685 1.42509 1.34481 1.38669 1.20548 1.19655 1.07866 1.13613 0.96395 0.90026 1.25516 0.99494 0.98952 1.02168 1.69817 1.29535 1.24599 1.37799 0.85204 0.78715 0.76257 0.79951 1.21402 1.22674 1.19289 1.23278 0.99410 0.96723 0.84410 0.93551 0.91434 0.89368 0.87326 0.93258 0.89456 0.91446 0.73721 0.81878 0.89891 0.90484 0.91591 0.88022 0.79204 0.94033 0.92185 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.17 71.98 0.66 -2.00 16 2 C -0.04 -0.85 3.24 -11.54 -0.04 -0.89 16 3 C -0.14 -2.52 9.18 71.98 0.66 -1.85 16 4 C 0.08 2.28 5.88 25.26 0.15 2.43 16 5 O -0.17 -4.30 10.52 4.40 0.05 -4.25 16 6 C -0.03 -0.68 12.03 66.89 0.80 0.13 16 7 C -0.21 -6.15 9.43 23.65 0.22 -5.93 16 8 C -0.27 -8.60 6.24 -18.99 -0.12 -8.72 16 9 C 0.60 21.03 7.84 86.65 0.68 21.71 16 10 O -0.58 -21.80 14.82 -4.07 -0.06 -21.86 16 11 N -0.61 -20.15 3.33 -815.04 -2.72 -22.87 16 12 C 0.11 3.25 6.88 86.86 0.60 3.85 16 13 C -0.13 -3.91 6.71 31.99 0.21 -3.70 16 14 C 0.16 5.92 3.61 46.18 0.17 6.09 16 15 H 0.08 2.64 8.09 -2.38 -0.02 2.62 16 16 N -0.72 -33.69 5.15 -317.32 -1.63 -35.32 16 17 C -0.24 -12.52 9.96 84.03 0.84 -11.69 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 20 N -0.97 -56.73 13.06 21.65 0.28 -56.45 16 21 Si 0.97 43.80 29.55 68.60 2.03 45.82 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.09 2.99 4.78 86.68 0.41 3.41 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.11 3.05 5.54 -2.39 -0.01 3.03 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.25 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.16 4.88 4.92 -2.91 -0.01 4.86 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.18 8.08 -2.38 -0.02 2.16 16 37 H 0.07 2.14 8.01 -2.39 -0.02 2.12 16 38 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.38 19.13 7.76 -92.71 -0.72 18.41 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.06 2.29 6.65 -2.38 -0.02 2.27 16 42 H 0.07 2.22 7.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.25 343.75 3.97 -61.27 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.31 Total: 34.06 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.72 Total: -0.41 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.07 Total: -114.64 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.01 Total: -26.11 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.25 3.97 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019848688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.312 kcal (2) G-P(sol) polarization free energy of solvation -65.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds