Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47080 * 2 1 4 4 O 1.33930 * 125.61707 * 270.02749 * 3 2 1 5 5 C 1.34908 * 109.38349 * 180.02562 * 4 3 2 6 6 C 1.46661 * 125.98674 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99953 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99990 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00374 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84475 * 23.80236 * 9 8 6 11 11 C 1.53779 * 113.61437 * 154.99528 * 9 8 6 12 12 C 1.53782 * 87.08025 * 89.20479 * 11 9 8 13 13 H 1.09002 * 113.61052 * 270.79948 * 12 11 9 14 14 N 1.46498 * 113.61542 * 139.97648 * 12 11 9 15 15 C 1.36943 * 119.99752 * 154.72232 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.53777 * 113.69198 * 252.53316 * 9 8 6 24 24 C 1.36538 * 108.02730 * 0.21951 * 5 4 3 25 25 C 1.35130 * 125.61446 * 90.01784 * 3 2 1 26 26 C 1.50702 * 126.44307 * 359.97438 * 25 3 2 27 27 H 1.08997 * 109.47547 * 300.00156 * 1 2 3 28 28 H 1.09003 * 109.46850 * 60.00279 * 1 2 3 29 29 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47162 * 240.00122 * 2 1 3 31 31 H 1.08994 * 109.46720 * 119.99910 * 2 1 3 32 32 H 0.97002 * 120.00353 * 359.97438 * 8 6 5 33 33 H 1.08997 * 113.61777 * 334.65303 * 11 9 8 34 34 H 1.08999 * 113.61498 * 203.74798 * 11 9 8 35 35 H 0.97001 * 120.00384 * 335.00588 * 14 12 11 36 36 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 37 37 H 1.09001 * 113.61338 * 156.31737 * 23 9 8 38 38 H 1.09000 * 113.61355 * 25.42000 * 23 9 8 39 39 H 1.08003 * 126.64782 * 179.77507 * 24 5 4 40 40 H 1.08997 * 109.47531 * 89.99622 * 26 25 3 41 41 H 1.09003 * 109.46570 * 209.99575 * 26 25 3 42 42 H 1.08998 * 109.46953 * 329.98963 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2918 2.1564 -1.0888 5 6 2.7243 3.3774 -0.7116 6 6 3.1110 4.4701 -1.6101 7 8 3.4876 5.5319 -1.1499 8 7 3.0492 4.2985 -2.9454 9 6 3.4349 5.3902 -3.8430 10 1 4.1168 6.1010 -3.3762 11 6 3.8968 4.9133 -5.2301 12 6 2.4249 5.0069 -5.6656 13 1 1.8608 4.0894 -5.4979 14 7 2.2455 5.5463 -7.0158 15 6 1.1255 5.2286 -7.7368 16 1 0.3723 4.5840 -7.3083 17 6 0.9582 5.7350 -9.0184 18 7 -0.1185 5.4301 -9.7111 19 14 2.2614 6.8494 -9.7597 20 1 3.2630 6.0262 -10.4838 21 1 1.6215 7.7971 -10.7070 22 1 2.9355 7.6108 -8.6775 23 6 2.2446 6.0548 -4.5547 24 6 2.7442 3.4157 0.6531 25 6 2.2950 2.1626 1.0985 26 6 2.1401 1.7250 2.5323 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7493 3.4521 -3.3123 33 1 4.2894 3.8965 -5.2338 34 1 4.5490 5.6218 -5.7406 35 1 2.9221 6.1252 -7.4007 36 1 -0.2356 5.7843 -10.6066 37 1 2.4452 7.0755 -4.8804 38 1 1.3035 5.9595 -4.0131 39 1 3.0448 4.2494 1.2703 40 1 3.0715 1.2765 2.8779 41 1 1.9010 2.5892 3.1521 42 1 1.3358 0.9929 2.6038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020917852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = 1.148270 kcal Electronic energy + Delta-G solvation = -22726.433544 eV Core-core repulsion = 19287.901465 eV Total energy + Delta-G solvation = -3438.532079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.96301 -39.93353 -38.04562 -35.22742 -34.19581 -33.60790 -32.63412 -30.58710 -29.89972 -27.52105 -25.30551 -25.25604 -24.11469 -22.35669 -21.75525 -21.32005 -19.84384 -19.21994 -18.00978 -17.46680 -16.68947 -16.17734 -15.84454 -15.04916 -14.93905 -14.64246 -14.57631 -14.11334 -13.73863 -13.45508 -13.37814 -13.21155 -12.90914 -12.79693 -12.63992 -12.44973 -12.28057 -12.21269 -12.03782 -11.75764 -11.37686 -11.01956 -10.93058 -10.48669 -10.29382 -10.17745 -9.93139 -9.92046 -9.59544 -9.04290 -8.91933 -8.57936 -7.30819 -5.81204 -3.17267 0.88590 2.04751 2.41193 3.08767 3.12410 3.35390 3.38076 3.43405 4.25096 4.50632 4.55488 4.55895 4.70568 4.81993 4.87223 5.03688 5.05720 5.09308 5.23673 5.29557 5.34118 5.39400 5.41096 5.53239 5.57827 5.66376 5.67730 5.72249 5.73970 5.83863 5.91071 6.08795 6.15795 6.21542 6.35148 6.48167 6.53909 6.69352 6.91965 7.45691 7.94492 8.04628 8.38236 9.15736 9.88261 10.07812 11.36938 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.003030 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.144300 B = 9239.357443 C =10123.297971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C 0.020 3.980 4 O -0.158 6.158 5 C -0.074 4.074 6 C 0.604 3.396 7 O -0.524 6.524 8 N -0.695 5.695 9 C 0.115 3.885 10 H 0.100 0.900 11 C -0.162 4.162 12 C 0.172 3.828 13 H 0.083 0.917 14 N -0.736 5.736 15 C -0.250 4.250 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.176 4.176 24 C -0.117 4.117 25 C -0.192 4.192 26 C -0.082 4.082 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.406 0.594 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.363 0.637 36 H 0.260 0.740 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.159 0.841 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -10.773 23.530 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.032 4.032 4 O -0.054 6.054 5 C -0.126 4.126 6 C 0.390 3.610 7 O -0.402 6.402 8 N -0.344 5.344 9 C 0.010 3.990 10 H 0.118 0.882 11 C -0.202 4.202 12 C 0.060 3.940 13 H 0.101 0.899 14 N -0.376 5.376 15 C -0.380 4.380 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.218 4.218 24 C -0.138 4.138 25 C -0.193 4.193 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.242 0.758 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.177 0.823 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.061 -10.184 23.385 26.217 hybrid contribution 0.697 0.587 -0.730 1.168 sum 6.758 -9.597 22.655 25.515 Atomic orbital electron populations 1.21796 0.93462 1.02646 1.03015 1.20190 0.96741 0.87008 1.04462 1.22617 1.01894 0.95005 0.83709 1.84015 1.64694 1.21982 1.34720 1.22032 1.10442 0.85597 0.94542 1.16518 0.77901 0.84924 0.81622 1.90871 1.47918 1.25274 1.76146 1.45612 1.66346 1.17492 1.04980 1.21870 0.98675 0.89267 0.89212 0.88171 1.23889 1.00152 1.01732 0.94415 1.21620 0.92538 0.95206 0.84614 0.89940 1.42743 1.23704 1.57607 1.13498 1.19131 0.97161 1.25588 0.96100 0.89160 1.24699 0.97342 1.00223 0.96795 1.69701 1.27493 1.48796 1.11970 0.86545 0.81810 0.81057 0.79085 1.21021 1.21677 1.20224 1.24287 0.97237 1.01238 0.99008 1.21797 1.00661 0.98381 0.92929 1.20185 1.08001 0.94471 0.96685 1.20188 1.01961 1.01564 0.90141 0.92090 0.91865 0.91322 0.89576 0.88612 0.75842 0.91264 0.89015 0.80358 0.92985 0.89421 0.91847 0.82346 0.91374 0.91276 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.05 -0.30 6.08 -27.88 -0.17 -0.47 16 3 C 0.02 0.20 6.57 -35.41 -0.23 -0.03 16 4 O -0.16 -1.91 10.40 5.01 0.05 -1.85 16 5 C -0.07 -0.97 7.13 -36.80 -0.26 -1.24 16 6 C 0.60 8.98 7.79 -12.86 -0.10 8.88 16 7 O -0.52 -9.19 16.46 5.19 0.09 -9.11 16 8 N -0.69 -9.54 5.26 -54.33 -0.29 -9.82 16 9 C 0.11 1.69 4.32 -67.12 -0.29 1.40 16 10 H 0.10 1.50 7.46 -51.93 -0.39 1.12 16 11 C -0.16 -2.41 7.58 -25.92 -0.20 -2.61 16 12 C 0.17 3.18 4.36 -67.12 -0.29 2.89 16 13 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 14 N -0.74 -17.09 5.21 -52.64 -0.27 -17.36 16 15 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -29.15 13.97 55.49 0.78 -28.38 16 19 Si 0.88 21.92 27.74 -169.99 -4.71 17.21 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 23 C -0.18 -2.99 7.68 -25.92 -0.20 -3.19 16 24 C -0.12 -1.37 10.57 -39.39 -0.42 -1.79 16 25 C -0.19 -1.87 6.14 -104.93 -0.64 -2.52 16 26 C -0.08 -0.53 9.98 36.01 0.36 -0.17 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.43 7.75 -51.93 -0.40 0.03 16 32 H 0.41 4.97 8.46 -40.82 -0.35 4.63 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 35 H 0.36 8.26 5.78 -40.82 -0.24 8.02 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.34 7.77 -51.93 -0.40 -0.06 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -33.27 354.94 -7.78 -41.05 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.44 Total: 9.40 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.33 Total: -6.48 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.22 Total: -55.56 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.14 Total: -10.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.27 -7.78 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020917852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.198 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds