Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47080 * 2 1 4 4 O 1.33930 * 125.61707 * 270.02749 * 3 2 1 5 5 C 1.34908 * 109.38349 * 180.02562 * 4 3 2 6 6 C 1.46661 * 125.98674 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99953 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99990 * 0.02562 * 6 5 4 9 9 C 1.46504 * 120.00374 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.84475 * 23.80236 * 9 8 6 11 11 C 1.53779 * 113.61437 * 154.99528 * 9 8 6 12 12 C 1.53782 * 87.08025 * 89.20479 * 11 9 8 13 13 H 1.09002 * 113.61052 * 270.79948 * 12 11 9 14 14 N 1.46498 * 113.61542 * 139.97648 * 12 11 9 15 15 C 1.36943 * 119.99752 * 154.72232 * 14 12 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 12 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 12 18 18 N 1.31611 * 120.00081 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00178 * 19 17 15 21 21 H 1.48498 * 109.47011 * 210.00042 * 19 17 15 22 22 H 1.48502 * 109.47495 * 329.99664 * 19 17 15 23 23 C 1.53777 * 113.69198 * 252.53316 * 9 8 6 24 24 C 1.36538 * 108.02730 * 0.21951 * 5 4 3 25 25 C 1.35130 * 125.61446 * 90.01784 * 3 2 1 26 26 C 1.50702 * 126.44307 * 359.97438 * 25 3 2 27 27 H 1.08997 * 109.47547 * 300.00156 * 1 2 3 28 28 H 1.09003 * 109.46850 * 60.00279 * 1 2 3 29 29 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47162 * 240.00122 * 2 1 3 31 31 H 1.08994 * 109.46720 * 119.99910 * 2 1 3 32 32 H 0.97002 * 120.00353 * 359.97438 * 8 6 5 33 33 H 1.08997 * 113.61777 * 334.65303 * 11 9 8 34 34 H 1.08999 * 113.61498 * 203.74798 * 11 9 8 35 35 H 0.97001 * 120.00384 * 335.00588 * 14 12 11 36 36 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 37 37 H 1.09001 * 113.61338 * 156.31737 * 23 9 8 38 38 H 1.09000 * 113.61355 * 25.42000 * 23 9 8 39 39 H 1.08003 * 126.64782 * 179.77507 * 24 5 4 40 40 H 1.08997 * 109.47531 * 89.99622 * 26 25 3 41 41 H 1.09003 * 109.46570 * 209.99575 * 26 25 3 42 42 H 1.08998 * 109.46953 * 329.98963 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2918 2.1564 -1.0888 5 6 2.7243 3.3774 -0.7116 6 6 3.1110 4.4701 -1.6101 7 8 3.4876 5.5319 -1.1499 8 7 3.0492 4.2985 -2.9454 9 6 3.4349 5.3902 -3.8430 10 1 4.1168 6.1010 -3.3762 11 6 3.8968 4.9133 -5.2301 12 6 2.4249 5.0069 -5.6656 13 1 1.8608 4.0894 -5.4979 14 7 2.2455 5.5463 -7.0158 15 6 1.1255 5.2286 -7.7368 16 1 0.3723 4.5840 -7.3083 17 6 0.9582 5.7350 -9.0184 18 7 -0.1185 5.4301 -9.7111 19 14 2.2614 6.8494 -9.7597 20 1 3.2630 6.0262 -10.4838 21 1 1.6215 7.7971 -10.7070 22 1 2.9355 7.6108 -8.6775 23 6 2.2446 6.0548 -4.5547 24 6 2.7442 3.4157 0.6531 25 6 2.2950 2.1626 1.0985 26 6 2.1401 1.7250 2.5323 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7493 3.4521 -3.3123 33 1 4.2894 3.8965 -5.2338 34 1 4.5490 5.6218 -5.7406 35 1 2.9221 6.1252 -7.4007 36 1 -0.2356 5.7843 -10.6066 37 1 2.4452 7.0755 -4.8804 38 1 1.3035 5.9595 -4.0131 39 1 3.0448 4.2494 1.2703 40 1 3.0715 1.2765 2.8779 41 1 1.9010 2.5892 3.1521 42 1 1.3358 0.9929 2.6038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020917852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = -21.025517 kcal Electronic energy + Delta-G solvation = -22727.395072 eV Core-core repulsion = 19287.901465 eV Total energy + Delta-G solvation = -3439.493606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.81614 -41.17871 -39.38570 -36.04139 -35.78329 -34.31896 -34.20350 -32.48105 -30.72692 -28.21409 -26.68835 -26.56731 -25.34524 -23.66915 -22.91392 -22.25647 -20.85841 -20.62791 -19.51289 -18.88304 -17.57498 -17.42613 -16.75248 -16.66381 -16.21588 -15.81750 -15.66966 -15.32023 -14.95472 -14.49294 -14.30410 -14.18751 -14.05466 -13.93376 -13.73177 -13.54776 -13.39724 -13.33886 -12.95249 -12.90158 -12.62647 -12.27632 -12.13394 -11.90291 -11.87105 -11.82469 -11.49818 -11.30911 -10.91910 -10.76472 -10.23520 -9.42200 -9.29865 -8.03725 -5.37473 -0.06485 1.24085 1.38561 1.41995 1.49217 1.52138 2.00869 2.07486 2.48090 3.25974 3.46662 3.56887 3.67193 3.73422 3.76960 3.82343 4.17926 4.19307 4.22079 4.31225 4.33622 4.48461 4.58992 4.65523 4.84180 4.85601 4.86977 4.91118 4.94501 5.00780 5.04299 5.07085 5.10608 5.11718 5.13991 5.32591 5.52558 5.55803 5.75250 5.84696 6.21006 6.36150 6.91780 7.06376 7.82479 8.02113 9.17776 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.003030 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.144300 B = 9239.357443 C =10123.297971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C 0.022 3.978 4 O -0.169 6.169 5 C -0.105 4.105 6 C 0.605 3.395 7 O -0.557 6.557 8 N -0.690 5.690 9 C 0.129 3.871 10 H 0.104 0.896 11 C -0.140 4.140 12 C 0.153 3.847 13 H 0.076 0.924 14 N -0.740 5.740 15 C -0.236 4.236 16 H 0.056 0.944 17 C -0.066 4.066 18 N -0.985 5.985 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.250 1.250 23 C -0.173 4.173 24 C -0.117 4.117 25 C -0.198 4.198 26 C -0.081 4.081 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.413 0.587 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.369 0.631 36 H 0.258 0.742 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.162 0.838 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -11.656 25.287 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.031 4.031 4 O -0.066 6.066 5 C -0.157 4.157 6 C 0.393 3.607 7 O -0.438 6.438 8 N -0.339 5.339 9 C 0.024 3.976 10 H 0.122 0.878 11 C -0.180 4.180 12 C 0.044 3.956 13 H 0.094 0.906 14 N -0.381 5.381 15 C -0.367 4.367 16 H 0.074 0.926 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.174 1.174 23 C -0.215 4.215 24 C -0.138 4.138 25 C -0.199 4.199 26 C -0.137 4.137 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.250 0.750 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.202 0.798 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.180 0.820 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.879 -11.092 25.199 28.638 hybrid contribution 0.043 0.729 -1.126 1.343 sum 7.922 -10.363 24.073 27.380 Atomic orbital electron populations 1.21797 0.93150 1.03686 1.02161 1.20424 0.96843 0.84964 1.06098 1.23425 1.00392 0.96061 0.83189 1.83997 1.65000 1.21763 1.35835 1.21747 1.13130 0.86099 0.94684 1.16708 0.77172 0.84979 0.81844 1.90839 1.49593 1.26682 1.76714 1.45554 1.66090 1.17526 1.04750 1.21674 0.97245 0.89351 0.89360 0.87755 1.23729 0.97354 1.03363 0.93514 1.21937 0.95629 0.95267 0.82767 0.90612 1.42713 1.22404 1.58161 1.14824 1.19099 0.97602 1.23786 0.96226 0.92604 1.25552 0.99925 1.02676 0.97535 1.69889 1.30171 1.51013 1.12424 0.85383 0.78884 0.78868 0.78475 1.20181 1.22520 1.17407 1.24187 0.97916 1.00851 0.98541 1.22079 0.99744 0.99396 0.92603 1.20579 1.07402 0.93482 0.98424 1.20299 1.03332 1.02266 0.87847 0.91852 0.93832 0.89348 0.89019 0.85882 0.75001 0.89331 0.87709 0.79759 0.93335 0.89522 0.92999 0.82026 0.90077 0.90921 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.05 -0.48 6.08 29.85 0.18 -0.30 16 3 C 0.02 0.39 6.57 24.97 0.16 0.55 16 4 O -0.17 -3.99 10.40 -4.97 -0.05 -4.04 16 5 C -0.11 -2.75 7.13 24.07 0.17 -2.58 16 6 C 0.61 17.94 7.79 86.44 0.67 18.61 16 7 O -0.56 -19.63 16.46 -4.34 -0.07 -19.70 16 8 N -0.69 -18.50 5.26 -444.02 -2.34 -20.84 16 9 C 0.13 3.63 4.32 45.52 0.20 3.83 16 10 H 0.10 2.96 7.46 -2.39 -0.02 2.94 16 11 C -0.14 -3.83 7.58 31.12 0.24 -3.60 16 12 C 0.15 5.56 4.36 45.52 0.20 5.76 16 13 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 14 N -0.74 -33.74 5.21 -320.45 -1.67 -35.41 16 15 C -0.24 -13.39 10.45 84.03 0.88 -12.52 16 16 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 17 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 18 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 19 Si 0.96 45.16 27.74 68.60 1.90 47.06 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 23 C -0.17 -5.79 7.68 31.12 0.24 -5.55 16 24 C -0.12 -2.69 10.57 22.39 0.24 -2.45 16 25 C -0.20 -3.51 6.14 -20.06 -0.12 -3.63 16 26 C -0.08 -0.82 9.98 71.24 0.71 -0.11 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.12 0.63 7.75 -2.39 -0.02 0.61 16 32 H 0.41 9.88 8.46 -92.71 -0.78 9.10 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.10 2.68 8.12 -2.39 -0.02 2.66 16 35 H 0.37 15.94 5.78 -92.71 -0.54 15.40 16 36 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.57 7.77 -2.39 -0.02 0.55 16 Total: -1.00 -73.60 354.94 2.67 -70.92 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.34 Total: 31.21 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.94 Total: -6.18 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -3.70 Total: -119.27 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.12 Total: -23.74 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Total: -73.60 2.67 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020917852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.895 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds