Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47452 * 2 1 4 4 C 1.40362 * 126.64248 * 265.02629 * 3 2 1 5 5 C 1.35134 * 107.11104 * 179.97438 * 4 3 2 6 6 O 1.33923 * 108.76938 * 359.97438 * 5 4 3 7 7 C 1.34916 * 109.38281 * 0.02562 * 6 5 4 8 8 C 1.46660 * 125.98409 * 179.97438 * 7 6 5 9 9 O 1.21698 * 119.99508 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00476 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00406 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47332 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88349 * 51.11748 * 12 11 10 14 14 C 1.55148 * 111.00412 * 174.99729 * 12 11 10 15 15 C 1.54319 * 102.94195 * 153.57761 * 14 12 11 16 16 N 1.47022 * 107.27125 * 337.80673 * 15 14 12 17 17 C 1.36936 * 125.64891 * 178.91703 * 16 15 14 18 18 H 1.08003 * 120.00133 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00136 * 0.02953 * 17 16 15 20 20 N 1.31626 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47288 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47276 * 120.00062 * 21 19 17 24 24 H 1.48501 * 109.47153 * 239.99899 * 21 19 17 25 25 C 1.47420 * 108.70196 * 358.94033 * 16 15 14 26 26 H 1.09000 * 109.47442 * 300.00652 * 1 2 3 27 27 H 1.09004 * 109.47291 * 59.99897 * 1 2 3 28 28 H 1.08999 * 109.47736 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46978 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.46871 * 119.99965 * 2 1 3 31 31 H 1.08001 * 126.44562 * 359.97438 * 4 3 2 32 32 H 1.08005 * 125.61043 * 179.74017 * 5 4 3 33 33 H 0.97002 * 119.99473 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46787 * 299.99974 * 11 10 8 35 35 H 1.09000 * 109.47114 * 59.99813 * 11 10 8 36 36 H 1.09004 * 110.72286 * 271.94349 * 14 12 11 37 37 H 1.09005 * 110.72118 * 35.03721 * 14 12 11 38 38 H 1.09002 * 109.88437 * 97.22925 * 15 14 12 39 39 H 1.09003 * 109.88388 * 218.39025 * 15 14 12 40 40 H 0.96996 * 120.00058 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.37175 * 265.28844 * 25 16 15 42 42 H 1.09004 * 110.36952 * 142.96198 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4037 2.1780 -1.1220 5 6 2.7908 3.3920 -0.6720 6 8 2.6746 3.4142 0.6620 7 6 2.2136 2.2211 1.0912 8 6 1.9532 1.8490 2.4857 9 8 1.5364 0.7367 2.7510 10 7 2.1752 2.7386 3.4734 11 6 1.9156 2.3667 4.8665 12 6 2.2479 3.5480 5.7802 13 1 1.7568 4.4574 5.4338 14 6 1.8680 3.2368 7.2519 15 6 2.8343 4.1326 8.0552 16 7 3.9777 4.4344 7.1817 17 6 5.0490 5.2206 7.5124 18 1 5.8416 5.3821 6.7968 19 6 5.1162 5.8100 8.7674 20 7 4.1500 5.6136 9.6394 21 14 6.5779 6.8820 9.2188 22 1 7.5198 6.9430 8.0724 23 1 6.1054 8.2514 9.5453 24 1 7.2708 6.3032 10.3978 25 6 3.7797 3.7508 5.8907 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 2.3838 1.8518 -2.1514 32 1 3.1404 4.2084 -1.2866 33 1 2.5077 3.6250 3.2620 34 1 0.8645 2.1020 4.9819 35 1 2.5371 1.5129 5.1365 36 1 0.8321 3.5127 7.4494 37 1 2.0351 2.1838 7.4790 38 1 2.3320 5.0568 8.3410 39 1 3.1768 3.6040 8.9448 40 1 4.1972 6.0252 10.5164 41 1 4.2909 2.7882 5.8887 42 1 4.1397 4.3742 5.0721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028782009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -8.237876 kcal Electronic energy + Delta-G solvation = -23074.622339 eV Core-core repulsion = 19635.683247 eV Total energy + Delta-G solvation = -3438.939093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.89931 -39.50663 -37.65430 -35.42070 -34.46663 -32.54187 -31.56562 -30.24979 -29.38356 -28.15707 -25.67408 -24.41210 -23.52502 -22.56554 -21.20793 -20.33293 -19.99338 -19.49406 -18.14159 -16.81798 -16.56379 -16.18177 -16.04526 -15.19016 -14.74645 -14.61446 -14.44884 -13.99796 -13.80620 -13.55957 -13.22224 -13.05432 -12.80584 -12.55180 -12.34567 -12.02182 -11.77206 -11.50460 -11.40999 -11.11838 -10.89950 -10.81532 -10.47139 -10.19467 -10.04908 -9.94923 -9.91334 -9.82736 -9.66210 -9.14389 -8.71559 -8.60562 -6.83298 -5.71496 -3.04992 0.91543 2.13852 2.55576 3.11169 3.22865 3.39470 3.44945 3.47466 4.46849 4.49211 4.52288 4.70797 5.07723 5.11018 5.20334 5.21186 5.29028 5.41633 5.43059 5.51220 5.54294 5.66566 5.74424 5.82718 5.88152 5.99941 6.04320 6.05981 6.12621 6.18578 6.33991 6.37053 6.50209 6.52919 6.63952 6.70993 6.90587 7.47319 7.56275 7.63094 7.82726 8.06983 8.25907 9.22112 9.82421 10.48427 11.40344 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.003079 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.457216 B = 9091.823148 C = 9918.183221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.087 4.087 4 C -0.225 4.225 5 C -0.006 4.006 6 O -0.162 6.162 7 C -0.079 4.079 8 C 0.599 3.401 9 O -0.521 6.521 10 N -0.713 5.713 11 C 0.132 3.868 12 C -0.118 4.118 13 H 0.080 0.920 14 C -0.134 4.134 15 C 0.177 3.823 16 N -0.607 5.607 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.142 3.858 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.406 0.594 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.020 0.980 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -7.079 -20.601 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.090 4.090 4 C -0.244 4.244 5 C -0.076 4.076 6 O -0.057 6.057 7 C -0.131 4.131 8 C 0.385 3.615 9 O -0.399 6.399 10 N -0.363 5.363 11 C 0.009 3.991 12 C -0.138 4.138 13 H 0.099 0.901 14 C -0.173 4.173 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.015 3.985 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.899 -7.503 -19.960 22.412 hybrid contribution 1.001 1.107 -0.080 1.495 sum -5.899 -6.396 -20.040 21.848 Atomic orbital electron populations 1.21633 0.94416 1.01775 1.01845 1.20128 0.96317 0.90171 1.03371 1.20622 0.99659 0.97699 0.91049 1.21727 1.07976 0.94536 1.00160 1.24354 1.02346 1.00041 0.80836 1.84086 1.64930 1.33625 1.23044 1.21979 1.10691 0.85346 0.95122 1.16535 0.78375 0.84823 0.81764 1.90847 1.46522 1.20414 1.82161 1.46015 1.66290 1.16896 1.07117 1.21493 1.01161 0.98102 0.78357 1.22624 0.98959 0.96746 0.95478 0.90143 1.22857 1.00089 1.00605 0.93763 1.21150 0.86036 0.95967 0.91605 1.44492 1.22203 1.56412 1.10187 1.19107 0.97350 1.21153 0.98011 0.90434 1.24810 0.98437 1.00813 0.96485 1.69977 1.32464 1.47973 1.06536 0.86043 0.81685 0.79947 0.78081 1.20522 1.21763 1.21753 1.21587 0.91569 0.95505 0.89812 0.92219 0.93178 0.92292 0.91207 0.89175 0.82803 0.77413 0.75864 0.91263 0.90944 0.91947 0.92138 0.93528 0.93867 0.93811 0.96264 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.06 -0.65 5.72 -27.88 -0.16 -0.81 16 3 C -0.09 -0.99 5.45 -104.44 -0.57 -1.56 16 4 C -0.22 -2.00 10.83 -39.89 -0.43 -2.43 16 5 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 6 O -0.16 -1.84 10.40 5.01 0.05 -1.78 16 7 C -0.08 -1.02 7.13 -36.80 -0.26 -1.28 16 8 C 0.60 8.61 7.79 -12.86 -0.10 8.51 16 9 O -0.52 -8.52 14.64 5.19 0.08 -8.44 16 10 N -0.71 -9.66 5.50 -61.62 -0.34 -10.00 16 11 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 12 C -0.12 -1.96 3.05 -88.48 -0.27 -2.23 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 15 C 0.18 4.27 5.37 -3.07 -0.02 4.26 16 16 N -0.61 -15.47 3.39 -170.08 -0.58 -16.05 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.16 10.31 55.49 0.57 -26.58 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 2.87 6.65 -2.53 -0.02 2.85 16 26 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.10 6.72 -51.93 -0.35 0.75 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.21 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.41 5.06 8.23 -40.82 -0.34 4.73 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 39 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -32.35 347.31 -8.00 -40.35 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.46 Total: 1.14 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.53 Total: -0.99 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.34 Total: -52.64 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.13 Total: -10.23 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.35 -8.00 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028782009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.111 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds