Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47452 * 2 1 4 4 C 1.40362 * 126.64248 * 265.02629 * 3 2 1 5 5 C 1.35134 * 107.11104 * 179.97438 * 4 3 2 6 6 O 1.33923 * 108.76938 * 359.97438 * 5 4 3 7 7 C 1.34916 * 109.38281 * 0.02562 * 6 5 4 8 8 C 1.46660 * 125.98409 * 179.97438 * 7 6 5 9 9 O 1.21698 * 119.99508 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00476 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00406 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47332 * 179.97438 * 11 10 8 13 13 H 1.09002 * 110.88349 * 51.11748 * 12 11 10 14 14 C 1.55148 * 111.00412 * 174.99729 * 12 11 10 15 15 C 1.54319 * 102.94195 * 153.57761 * 14 12 11 16 16 N 1.47022 * 107.27125 * 337.80673 * 15 14 12 17 17 C 1.36936 * 125.64891 * 178.91703 * 16 15 14 18 18 H 1.08003 * 120.00133 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00136 * 0.02953 * 17 16 15 20 20 N 1.31626 * 120.00204 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00240 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47288 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47276 * 120.00062 * 21 19 17 24 24 H 1.48501 * 109.47153 * 239.99899 * 21 19 17 25 25 C 1.47420 * 108.70196 * 358.94033 * 16 15 14 26 26 H 1.09000 * 109.47442 * 300.00652 * 1 2 3 27 27 H 1.09004 * 109.47291 * 59.99897 * 1 2 3 28 28 H 1.08999 * 109.47736 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46978 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.46871 * 119.99965 * 2 1 3 31 31 H 1.08001 * 126.44562 * 359.97438 * 4 3 2 32 32 H 1.08005 * 125.61043 * 179.74017 * 5 4 3 33 33 H 0.97002 * 119.99473 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46787 * 299.99974 * 11 10 8 35 35 H 1.09000 * 109.47114 * 59.99813 * 11 10 8 36 36 H 1.09004 * 110.72286 * 271.94349 * 14 12 11 37 37 H 1.09005 * 110.72118 * 35.03721 * 14 12 11 38 38 H 1.09002 * 109.88437 * 97.22925 * 15 14 12 39 39 H 1.09003 * 109.88388 * 218.39025 * 15 14 12 40 40 H 0.96996 * 120.00058 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.37175 * 265.28844 * 25 16 15 42 42 H 1.09004 * 110.36952 * 142.96198 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4037 2.1780 -1.1220 5 6 2.7908 3.3920 -0.6720 6 8 2.6746 3.4142 0.6620 7 6 2.2136 2.2211 1.0912 8 6 1.9532 1.8490 2.4857 9 8 1.5364 0.7367 2.7510 10 7 2.1752 2.7386 3.4734 11 6 1.9156 2.3667 4.8665 12 6 2.2479 3.5480 5.7802 13 1 1.7568 4.4574 5.4338 14 6 1.8680 3.2368 7.2519 15 6 2.8343 4.1326 8.0552 16 7 3.9777 4.4344 7.1817 17 6 5.0490 5.2206 7.5124 18 1 5.8416 5.3821 6.7968 19 6 5.1162 5.8100 8.7674 20 7 4.1500 5.6136 9.6394 21 14 6.5779 6.8820 9.2188 22 1 7.5198 6.9430 8.0724 23 1 6.1054 8.2514 9.5453 24 1 7.2708 6.3032 10.3978 25 6 3.7797 3.7508 5.8907 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 2.3838 1.8518 -2.1514 32 1 3.1404 4.2084 -1.2866 33 1 2.5077 3.6250 3.2620 34 1 0.8645 2.1020 4.9819 35 1 2.5371 1.5129 5.1365 36 1 0.8321 3.5127 7.4494 37 1 2.0351 2.1838 7.4790 38 1 2.3320 5.0568 8.3410 39 1 3.1768 3.6040 8.9448 40 1 4.1972 6.0252 10.5164 41 1 4.2909 2.7882 5.8887 42 1 4.1397 4.3742 5.0721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028782009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -29.103924 kcal Electronic energy + Delta-G solvation = -23075.527159 eV Core-core repulsion = 19635.683247 eV Total energy + Delta-G solvation = -3439.843912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.67163 -40.64212 -39.24599 -36.44941 -35.64163 -34.32754 -32.33434 -31.77932 -30.67460 -29.61996 -27.34037 -25.74913 -24.67571 -23.48593 -22.21987 -21.78226 -21.52271 -20.59849 -19.18216 -18.70518 -17.46695 -17.28250 -17.01241 -16.68790 -16.37716 -15.77873 -15.66901 -15.35894 -14.89474 -14.61954 -14.55675 -14.01735 -13.93435 -13.83294 -13.57862 -13.46169 -13.26999 -13.06171 -12.77471 -12.67308 -12.26851 -12.04461 -11.98052 -11.89040 -11.82828 -11.56638 -11.47662 -11.14456 -10.72080 -10.68141 -10.24372 -9.54485 -8.90622 -7.85775 -5.21458 0.05473 1.43821 1.45410 1.46463 1.56829 1.73033 2.10557 2.25244 2.48858 3.32402 3.58378 3.70348 3.77068 3.83181 3.91417 4.00490 4.03442 4.41930 4.42332 4.46618 4.52550 4.61315 4.62386 4.69056 4.78431 4.84701 4.89668 5.02027 5.03745 5.07407 5.08287 5.23124 5.32677 5.35281 5.41102 5.44933 5.48819 5.67696 5.77486 5.89602 6.19641 6.44394 7.01591 7.09994 7.77254 8.41613 9.24879 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.003079 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.457216 B = 9091.823148 C = 9918.183221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.089 4.089 4 C -0.233 4.233 5 C 0.010 3.990 6 O -0.174 6.174 7 C -0.117 4.117 8 C 0.597 3.403 9 O -0.549 6.549 10 N -0.710 5.710 11 C 0.145 3.855 12 C -0.096 4.096 13 H 0.089 0.911 14 C -0.121 4.121 15 C 0.183 3.817 16 N -0.629 5.629 17 C -0.242 4.242 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.979 3.021 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.138 3.862 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.183 0.817 32 H 0.253 0.747 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.013 0.987 39 H 0.005 0.995 40 H 0.246 0.754 41 H 0.019 0.981 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -6.882 -23.543 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.251 4.251 5 C -0.059 4.059 6 O -0.070 6.070 7 C -0.168 4.168 8 C 0.385 3.615 9 O -0.430 6.430 10 N -0.361 5.361 11 C 0.021 3.979 12 C -0.116 4.116 13 H 0.107 0.893 14 C -0.160 4.160 15 C 0.058 3.942 16 N -0.356 5.356 17 C -0.371 4.371 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.220 1.220 25 C 0.012 3.988 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.200 0.800 32 H 0.269 0.731 33 H 0.248 0.752 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.826 -7.310 -22.940 25.025 hybrid contribution 1.009 1.039 0.717 1.616 sum -5.817 -6.271 -22.223 23.812 Atomic orbital electron populations 1.21589 0.93971 1.02364 1.01260 1.20159 0.96690 0.89968 1.03329 1.20974 0.98552 0.97953 0.91722 1.22082 1.07903 0.94375 1.00788 1.25317 0.99762 1.01011 0.79799 1.84073 1.65184 1.33058 1.24677 1.21707 1.13855 0.86662 0.94609 1.16749 0.77738 0.84406 0.82584 1.90823 1.47890 1.21452 1.82859 1.45920 1.66352 1.17161 1.06636 1.21265 1.01669 0.96500 0.78456 1.22417 0.96036 0.98062 0.95044 0.89319 1.22718 0.99730 0.99971 0.93568 1.20928 0.86690 0.95127 0.91498 1.44822 1.21979 1.56451 1.12329 1.19507 0.98236 1.21153 0.98240 0.89997 1.25675 1.01246 1.02566 0.96608 1.70200 1.34262 1.49038 1.06573 0.84998 0.78660 0.77789 0.77818 1.18926 1.21777 1.22039 1.21756 0.94291 0.94888 0.87819 0.94631 0.91789 0.91177 0.88883 0.91506 0.79982 0.73148 0.75209 0.90059 0.91664 0.89449 0.90821 0.96856 0.97696 0.94421 0.96343 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.89 71.98 0.71 -1.77 16 2 C -0.06 -1.27 5.72 29.85 0.17 -1.10 16 3 C -0.09 -1.89 5.45 -19.75 -0.11 -1.99 16 4 C -0.23 -3.38 10.83 22.07 0.24 -3.14 16 5 C 0.01 0.14 12.08 67.10 0.81 0.95 16 6 O -0.17 -3.62 10.40 -4.99 -0.05 -3.68 16 7 C -0.12 -2.89 7.13 24.07 0.17 -2.72 16 8 C 0.60 17.00 7.79 86.44 0.67 17.67 16 9 O -0.55 -18.12 14.64 -4.34 -0.06 -18.18 16 10 N -0.71 -18.61 5.50 -467.09 -2.57 -21.18 16 11 C 0.14 3.97 5.13 86.38 0.44 4.42 16 12 C -0.10 -3.06 3.05 -9.40 -0.03 -3.09 16 13 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 14 C -0.12 -4.29 6.42 31.78 0.20 -4.08 16 15 C 0.18 9.07 5.37 86.73 0.47 9.53 16 16 N -0.63 -32.60 3.39 -692.00 -2.35 -34.95 16 17 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 18 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 20 N -0.95 -57.93 10.31 21.65 0.22 -57.71 16 21 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 C 0.14 5.50 6.65 86.85 0.58 6.08 16 26 H 0.03 0.82 7.93 -2.39 -0.02 0.80 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.64 6.72 -2.39 -0.02 1.63 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.41 9.80 8.23 -92.71 -0.76 9.04 16 34 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 2.43 8.04 -2.38 -0.02 2.41 16 38 H 0.01 0.73 7.38 -2.39 -0.02 0.72 16 39 H 0.00 0.27 7.51 -2.39 -0.02 0.25 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.02 0.76 7.90 -2.39 -0.02 0.74 16 42 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -72.84 347.31 3.13 -69.71 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.25 Total: 13.40 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.66 Total: 4.42 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -4.69 Total: -113.83 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.12 Total: -21.86 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.84 3.13 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028782009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.601 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds