Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47118 * 2 1 4 4 C 1.40374 * 126.64713 * 265.02801 * 3 2 1 5 5 C 1.35122 * 107.11718 * 179.97438 * 4 3 2 6 6 O 1.33933 * 108.76606 * 0.02562 * 5 4 3 7 7 C 1.34914 * 109.38511 * 359.97438 * 6 5 4 8 8 C 1.46661 * 125.98472 * 180.02562 * 7 6 5 9 9 O 1.21701 * 119.99460 * 179.97438 * 8 7 6 10 10 N 1.34766 * 120.00247 * 359.97438 * 8 7 6 11 11 C 1.46503 * 120.00024 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47080 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.64033 * 305.69817 * 12 11 10 14 14 C 1.55162 * 110.71892 * 182.55611 * 12 11 10 15 15 C 1.54903 * 101.58087 * 206.13116 * 14 12 11 16 16 N 1.47428 * 104.83513 * 37.01189 * 15 14 12 17 17 C 1.36934 * 125.65305 * 155.90110 * 16 15 14 18 18 H 1.07999 * 120.00222 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99505 * 359.97438 * 17 16 15 20 20 N 1.31612 * 120.00417 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99658 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47011 * 59.99753 * 21 19 17 23 23 H 1.48498 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47194 * 300.00262 * 21 19 17 25 25 C 1.47326 * 108.73316 * 335.71202 * 16 15 14 26 26 H 1.09001 * 109.46440 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46535 * 299.99637 * 1 2 3 28 28 H 1.08997 * 109.47525 * 59.99659 * 1 2 3 29 29 H 1.09007 * 109.46988 * 240.00180 * 2 1 3 30 30 H 1.08997 * 109.47525 * 120.00341 * 2 1 3 31 31 H 1.08007 * 126.44011 * 0.02562 * 4 3 2 32 32 H 1.08003 * 125.62161 * 180.02562 * 5 4 3 33 33 H 0.97008 * 120.00269 * 359.97438 * 10 8 7 34 34 H 1.08996 * 109.46726 * 299.99412 * 11 10 8 35 35 H 1.08989 * 109.47385 * 60.00008 * 11 10 8 36 36 H 1.08998 * 111.00526 * 324.21011 * 14 12 11 37 37 H 1.09006 * 110.99864 * 88.01931 * 14 12 11 38 38 H 1.09001 * 110.36806 * 155.84863 * 15 14 12 39 39 H 1.08998 * 110.37117 * 278.06260 * 15 14 12 40 40 H 0.97001 * 120.00008 * 179.97438 * 20 19 17 41 41 H 1.08994 * 110.06272 * 241.87195 * 25 16 15 42 42 H 1.08998 * 109.84634 * 120.60992 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4036 2.1782 -1.1220 5 6 2.7907 3.3921 -0.6721 6 8 2.6755 3.4139 0.6621 7 6 2.2143 2.2209 1.0913 8 6 1.9537 1.8488 2.4858 9 8 1.5358 0.7369 2.7509 10 7 2.1770 2.7380 3.4736 11 6 1.9173 2.3660 4.8666 12 6 2.2500 3.5473 5.7804 13 1 3.2695 3.8920 5.6070 14 6 2.0460 3.1634 7.2699 15 6 1.7544 4.5437 7.9096 16 7 0.9536 5.2645 6.9033 17 6 0.0876 6.2937 7.1603 18 1 -0.4546 6.7583 6.3500 19 6 -0.0933 6.7397 8.4623 20 7 0.5670 6.1731 9.4498 21 14 -1.2741 8.1441 8.8129 22 1 -2.6400 7.7645 8.3705 23 1 -1.2873 8.4276 10.2705 24 1 -0.8343 9.3562 8.0762 25 6 1.2422 4.6977 5.5744 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3830 1.8523 -2.1515 32 1 3.1360 4.2101 -1.2869 33 1 2.5105 3.6241 3.2623 34 1 0.8660 2.1026 4.9822 35 1 2.5379 1.5116 5.1363 36 1 1.1963 2.4910 7.3873 37 1 2.9513 2.7222 7.6870 38 1 1.1852 4.4221 8.8312 39 1 2.6856 5.0748 8.1070 40 1 0.4408 6.4851 10.3596 41 1 1.6773 5.4606 4.9290 42 1 0.3250 4.3119 5.1296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028782010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -6.717845 kcal Electronic energy + Delta-G solvation = -23126.589895 eV Core-core repulsion = 19687.716716 eV Total energy + Delta-G solvation = -3438.873179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.89570 -39.50605 -37.64053 -35.40621 -34.45759 -32.54705 -31.55608 -30.23817 -29.38161 -28.11806 -25.68562 -24.40626 -23.50758 -22.56204 -21.21799 -20.38532 -19.90562 -19.44741 -18.14100 -16.84487 -16.54750 -16.21361 -15.97857 -15.29167 -14.76643 -14.61565 -14.38173 -14.05934 -13.77390 -13.60963 -13.22561 -12.84784 -12.78579 -12.51864 -12.50805 -11.78091 -11.71605 -11.50614 -11.47492 -11.11121 -10.95698 -10.78763 -10.46607 -10.20654 -10.09664 -9.99622 -9.93823 -9.78244 -9.52068 -9.13973 -8.71239 -8.64740 -6.83653 -5.65200 -3.06876 0.91944 2.14130 2.55754 3.12046 3.23455 3.40762 3.44811 3.46236 4.46827 4.49128 4.52750 4.71369 5.08315 5.12242 5.21824 5.24335 5.31087 5.39703 5.43783 5.52268 5.53110 5.67662 5.75082 5.84541 5.87240 6.02653 6.06988 6.09367 6.15164 6.20263 6.33895 6.38059 6.55146 6.57865 6.65970 6.73160 6.90120 7.47851 7.51186 7.62119 7.85496 8.07826 8.36463 9.22303 9.82979 10.47989 11.38743 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003095 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.097946 B = 9044.440472 C = 9417.372093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.087 4.087 4 C -0.225 4.225 5 C -0.006 4.006 6 O -0.162 6.162 7 C -0.079 4.079 8 C 0.599 3.401 9 O -0.520 6.520 10 N -0.714 5.714 11 C 0.132 3.868 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.134 4.134 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.140 3.860 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.209 0.791 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.012 0.988 40 H 0.253 0.747 41 H 0.019 0.981 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -9.465 -19.384 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.244 4.244 5 C -0.076 4.076 6 O -0.057 6.057 7 C -0.131 4.131 8 C 0.385 3.615 9 O -0.399 6.399 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.135 4.135 13 H 0.095 0.905 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.014 3.986 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.241 0.759 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.395 -9.886 -18.748 21.871 hybrid contribution -0.299 1.332 -0.299 1.398 sum 5.096 -8.554 -19.047 21.492 Atomic orbital electron populations 1.21640 0.94343 1.01808 1.01969 1.20127 0.96391 0.90130 1.03281 1.20632 0.99611 0.97754 0.91042 1.21727 1.07927 0.94561 1.00152 1.24347 1.02457 0.99981 0.80840 1.84085 1.64963 1.33638 1.23045 1.21985 1.10686 0.85296 0.95141 1.16538 0.78370 0.84856 0.81758 1.90851 1.46342 1.20544 1.82142 1.46019 1.66310 1.16837 1.07186 1.21548 1.01737 0.97574 0.78241 1.22458 0.99889 0.94936 0.96177 0.90517 1.23005 1.00414 1.00884 0.93066 1.21928 0.94567 0.85977 0.94804 1.44571 1.48916 1.38959 1.00635 1.19040 1.15811 1.07562 0.92794 0.90595 1.24784 1.00257 1.00038 0.95585 1.69780 1.44818 1.43376 0.99174 0.86147 0.80587 0.81738 0.76992 1.21145 1.21548 1.21234 1.21391 0.94883 0.92648 0.89649 0.92278 0.92123 0.93142 0.91239 0.89226 0.82801 0.77421 0.75921 0.90842 0.91251 0.91772 0.92064 0.87498 0.97029 0.93668 0.96323 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.06 -0.66 5.72 -27.88 -0.16 -0.82 16 3 C -0.09 -1.01 5.45 -104.43 -0.57 -1.58 16 4 C -0.22 -2.01 10.83 -39.89 -0.43 -2.44 16 5 C -0.01 -0.05 12.08 29.62 0.36 0.30 16 6 O -0.16 -1.85 10.40 4.99 0.05 -1.80 16 7 C -0.08 -1.02 7.13 -36.80 -0.26 -1.29 16 8 C 0.60 8.75 7.79 -12.87 -0.10 8.65 16 9 O -0.52 -8.66 14.64 5.19 0.08 -8.59 16 10 N -0.71 -9.84 5.43 -61.63 -0.33 -10.17 16 11 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 12 C -0.12 -1.93 2.98 -88.78 -0.26 -2.19 16 13 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 14 C -0.13 -2.48 6.54 -24.58 -0.16 -2.64 16 15 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 16 N -0.60 -15.54 3.40 -169.83 -0.58 -16.12 16 17 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.14 2.88 6.67 -2.90 -0.02 2.86 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.09 1.09 6.73 -51.93 -0.35 0.75 16 31 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 32 H 0.21 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.41 5.10 8.16 -40.82 -0.33 4.76 16 34 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 35 H 0.07 0.98 8.14 -51.94 -0.42 0.56 16 36 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -32.11 346.40 -7.96 -40.07 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.41 Total: 2.14 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.53 Total: -1.49 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.35 Total: -52.68 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.13 Total: -10.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.11 -7.96 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028782010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.357 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds