Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47118 * 2 1 4 4 C 1.40374 * 126.64713 * 265.02801 * 3 2 1 5 5 C 1.35122 * 107.11718 * 179.97438 * 4 3 2 6 6 O 1.33933 * 108.76606 * 0.02562 * 5 4 3 7 7 C 1.34914 * 109.38511 * 359.97438 * 6 5 4 8 8 C 1.46661 * 125.98472 * 180.02562 * 7 6 5 9 9 O 1.21701 * 119.99460 * 179.97438 * 8 7 6 10 10 N 1.34766 * 120.00247 * 359.97438 * 8 7 6 11 11 C 1.46503 * 120.00024 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47080 * 180.02562 * 11 10 8 13 13 H 1.09008 * 110.64033 * 305.69817 * 12 11 10 14 14 C 1.55162 * 110.71892 * 182.55611 * 12 11 10 15 15 C 1.54903 * 101.58087 * 206.13116 * 14 12 11 16 16 N 1.47428 * 104.83513 * 37.01189 * 15 14 12 17 17 C 1.36934 * 125.65305 * 155.90110 * 16 15 14 18 18 H 1.07999 * 120.00222 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99505 * 359.97438 * 17 16 15 20 20 N 1.31612 * 120.00417 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99658 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47011 * 59.99753 * 21 19 17 23 23 H 1.48498 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47194 * 300.00262 * 21 19 17 25 25 C 1.47326 * 108.73316 * 335.71202 * 16 15 14 26 26 H 1.09001 * 109.46440 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46535 * 299.99637 * 1 2 3 28 28 H 1.08997 * 109.47525 * 59.99659 * 1 2 3 29 29 H 1.09007 * 109.46988 * 240.00180 * 2 1 3 30 30 H 1.08997 * 109.47525 * 120.00341 * 2 1 3 31 31 H 1.08007 * 126.44011 * 0.02562 * 4 3 2 32 32 H 1.08003 * 125.62161 * 180.02562 * 5 4 3 33 33 H 0.97008 * 120.00269 * 359.97438 * 10 8 7 34 34 H 1.08996 * 109.46726 * 299.99412 * 11 10 8 35 35 H 1.08989 * 109.47385 * 60.00008 * 11 10 8 36 36 H 1.08998 * 111.00526 * 324.21011 * 14 12 11 37 37 H 1.09006 * 110.99864 * 88.01931 * 14 12 11 38 38 H 1.09001 * 110.36806 * 155.84863 * 15 14 12 39 39 H 1.08998 * 110.37117 * 278.06260 * 15 14 12 40 40 H 0.97001 * 120.00008 * 179.97438 * 20 19 17 41 41 H 1.08994 * 110.06272 * 241.87195 * 25 16 15 42 42 H 1.08998 * 109.84634 * 120.60992 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4036 2.1782 -1.1220 5 6 2.7907 3.3921 -0.6721 6 8 2.6755 3.4139 0.6621 7 6 2.2143 2.2209 1.0913 8 6 1.9537 1.8488 2.4858 9 8 1.5358 0.7369 2.7509 10 7 2.1770 2.7380 3.4736 11 6 1.9173 2.3660 4.8666 12 6 2.2500 3.5473 5.7804 13 1 3.2695 3.8920 5.6070 14 6 2.0460 3.1634 7.2699 15 6 1.7544 4.5437 7.9096 16 7 0.9536 5.2645 6.9033 17 6 0.0876 6.2937 7.1603 18 1 -0.4546 6.7583 6.3500 19 6 -0.0933 6.7397 8.4623 20 7 0.5670 6.1731 9.4498 21 14 -1.2741 8.1441 8.8129 22 1 -2.6400 7.7645 8.3705 23 1 -1.2873 8.4276 10.2705 24 1 -0.8343 9.3562 8.0762 25 6 1.2422 4.6977 5.5744 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.3830 1.8523 -2.1515 32 1 3.1360 4.2101 -1.2869 33 1 2.5105 3.6241 3.2623 34 1 0.8660 2.1026 4.9822 35 1 2.5379 1.5116 5.1363 36 1 1.1963 2.4910 7.3873 37 1 2.9513 2.7222 7.6870 38 1 1.1852 4.4221 8.8312 39 1 2.6856 5.0748 8.1070 40 1 0.4408 6.4851 10.3596 41 1 1.6773 5.4606 4.9290 42 1 0.3250 4.3119 5.1296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028782010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -27.289380 kcal Electronic energy + Delta-G solvation = -23127.481944 eV Core-core repulsion = 19687.716716 eV Total energy + Delta-G solvation = -3439.765228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.67812 -40.66358 -39.23286 -36.45815 -35.65627 -34.32946 -32.34200 -31.78054 -30.67622 -29.59226 -27.36636 -25.74525 -24.68364 -23.50233 -22.29374 -21.82627 -21.37662 -20.59319 -19.18778 -18.75285 -17.47241 -17.25901 -17.05336 -16.72389 -16.47664 -15.72959 -15.66312 -15.38349 -14.98963 -14.60817 -14.30791 -14.27252 -13.96759 -13.59683 -13.55047 -13.38592 -13.29523 -13.15183 -12.83129 -12.65736 -12.28180 -12.07473 -12.05153 -11.85331 -11.83002 -11.61058 -11.40725 -11.12770 -10.74123 -10.68879 -10.26386 -9.55437 -8.89406 -7.78048 -5.22476 0.04512 1.43207 1.45786 1.49059 1.55532 1.71798 2.09533 2.24077 2.49154 3.31054 3.59053 3.72060 3.76570 3.82071 3.90354 3.95322 4.05636 4.40752 4.42734 4.45500 4.51482 4.61360 4.63695 4.68092 4.75871 4.83793 4.88912 5.01620 5.02711 5.06806 5.11991 5.23026 5.31778 5.34127 5.36922 5.45932 5.47715 5.65548 5.81917 5.88715 6.31254 6.43371 7.00461 7.10596 7.77909 8.41587 9.23614 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.003095 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.097946 B = 9044.440472 C = 9417.372093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.089 4.089 4 C -0.233 4.233 5 C 0.011 3.989 6 O -0.174 6.174 7 C -0.117 4.117 8 C 0.597 3.403 9 O -0.550 6.550 10 N -0.710 5.710 11 C 0.144 3.856 12 C -0.095 4.095 13 H 0.095 0.905 14 C -0.121 4.121 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.243 4.243 18 H 0.078 0.922 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.137 3.863 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.183 0.817 32 H 0.253 0.747 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.072 0.928 39 H -0.010 1.010 40 H 0.248 0.752 41 H 0.026 0.974 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.365 -9.414 -22.073 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.251 4.251 5 C -0.058 4.058 6 O -0.070 6.070 7 C -0.168 4.168 8 C 0.385 3.615 9 O -0.431 6.431 10 N -0.361 5.361 11 C 0.021 3.979 12 C -0.114 4.114 13 H 0.113 0.887 14 C -0.160 4.160 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.372 4.372 18 H 0.096 0.904 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.012 3.988 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.201 0.799 32 H 0.269 0.731 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.008 0.992 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.049 -9.836 -21.467 24.376 hybrid contribution -0.481 1.337 0.415 1.480 sum 5.568 -8.499 -21.053 23.376 Atomic orbital electron populations 1.21600 0.94287 1.02346 1.01114 1.20154 0.96406 0.90017 1.03455 1.20983 0.98487 0.97998 0.91733 1.22085 1.07864 0.94400 1.00772 1.25326 0.99782 1.00951 0.79779 1.84071 1.65198 1.33015 1.24702 1.21689 1.13929 0.86657 0.94568 1.16773 0.77697 0.84443 0.82630 1.90824 1.47735 1.21660 1.82870 1.45914 1.66337 1.17145 1.06657 1.21305 1.01111 0.96904 0.78592 1.22293 0.99683 0.94061 0.95360 0.88658 1.22847 1.01865 0.97509 0.93752 1.21735 0.92749 0.88742 0.94070 1.44898 1.48771 1.38869 1.02957 1.19420 1.16315 1.08352 0.93128 0.90397 1.25636 1.02130 1.02673 0.95479 1.70041 1.46102 1.44536 0.99114 0.85123 0.78653 0.78914 0.76459 1.20403 1.21795 1.20361 1.21545 0.95778 0.93923 0.87536 0.91114 0.94980 0.91838 0.88677 0.91362 0.79936 0.73073 0.75176 0.92333 0.89904 0.91713 0.89010 0.91013 0.99173 0.94272 0.95628 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.89 71.98 0.71 -2.00 16 2 C -0.06 -1.27 5.72 29.85 0.17 -1.10 16 3 C -0.09 -1.92 5.45 -19.74 -0.11 -2.02 16 4 C -0.23 -3.41 10.83 22.07 0.24 -3.17 16 5 C 0.01 0.14 12.08 67.10 0.81 0.95 16 6 O -0.17 -3.65 10.40 -5.07 -0.05 -3.70 16 7 C -0.12 -2.94 7.13 24.07 0.17 -2.77 16 8 C 0.60 17.41 7.79 86.44 0.67 18.08 16 9 O -0.55 -18.65 14.64 -4.35 -0.06 -18.72 16 10 N -0.71 -19.10 5.43 -467.11 -2.53 -21.63 16 11 C 0.14 4.13 5.00 86.38 0.43 4.56 16 12 C -0.09 -3.05 2.98 -9.60 -0.03 -3.07 16 13 H 0.10 2.76 8.14 -2.38 -0.02 2.75 16 14 C -0.12 -4.35 6.54 31.99 0.21 -4.14 16 15 C 0.15 7.50 5.89 86.85 0.51 8.01 16 16 N -0.63 -32.83 3.40 -691.23 -2.35 -35.18 16 17 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 19 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 20 N -0.95 -56.99 10.09 21.65 0.22 -56.77 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C 0.14 5.61 6.67 86.67 0.58 6.19 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.03 0.81 7.92 -2.39 -0.02 0.79 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.68 6.73 -2.39 -0.02 1.66 16 31 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.41 9.93 8.16 -92.70 -0.76 9.18 16 34 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 37 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.02 0.83 7.73 -2.39 -0.02 0.82 16 Total: -1.00 -72.21 346.40 3.21 -69.00 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.26 Total: 15.77 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.70 Total: 3.12 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.67 Total: -113.59 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.12 Total: -22.42 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.21 3.21 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028782010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.713 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds