Wall clock time and date at job start Tue Mar 31 2020 06:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 C 1.50703 * 109.46874 * 120.00228 * 2 1 3 5 5 O 1.33654 * 125.79875 * 300.32255 * 4 2 1 6 6 C 1.34212 * 110.90762 * 180.13505 * 5 4 2 7 7 C 1.34178 * 109.12432 * 359.58460 * 6 5 4 8 8 C 1.36414 * 125.80332 * 120.00128 * 4 2 1 9 9 C 1.47381 * 127.19231 * 0.02562 * 8 4 2 10 10 O 1.21616 * 119.99992 * 0.02562 * 9 8 4 11 11 N 1.34769 * 119.99859 * 180.02562 * 9 8 4 12 12 C 1.46504 * 119.99728 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46997 * 179.97438 * 12 11 9 14 14 C 1.53942 * 113.74035 * 273.73483 * 13 12 11 15 15 N 1.47808 * 86.03798 * 222.08432 * 14 13 12 16 16 C 1.36942 * 134.45488 * 204.64235 * 15 14 13 17 17 H 1.07996 * 119.99485 * 173.34958 * 16 15 14 18 18 C 1.38808 * 120.00118 * 353.35014 * 16 15 14 19 19 N 1.31619 * 119.99996 * 5.06675 * 18 16 15 20 20 Si 1.86800 * 119.99918 * 185.06318 * 18 16 15 21 21 H 1.48495 * 109.47248 * 94.98581 * 20 18 16 22 22 H 1.48503 * 109.47098 * 214.98949 * 20 18 16 23 23 H 1.48506 * 109.47126 * 334.98598 * 20 18 16 24 24 C 1.47576 * 91.05062 * 24.55259 * 15 14 13 25 25 H 1.09001 * 109.47073 * 59.99942 * 1 2 3 26 26 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47208 * 300.00619 * 1 2 3 28 28 H 1.09002 * 109.46831 * 240.00028 * 2 1 3 29 29 H 1.08999 * 109.47318 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47078 * 300.00054 * 3 2 1 31 31 H 1.09007 * 109.47352 * 59.99788 * 3 2 1 32 32 H 1.08002 * 125.43719 * 179.85458 * 6 5 4 33 33 H 1.08004 * 127.02268 * 180.24063 * 7 6 5 34 34 H 0.96996 * 120.00688 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46666 * 299.99260 * 12 11 9 36 36 H 1.08992 * 109.47984 * 59.99512 * 12 11 9 37 37 H 1.08996 * 112.94491 * 45.32859 * 13 12 11 38 38 H 1.09008 * 113.77112 * 336.35201 * 14 13 12 39 39 H 1.09002 * 113.76724 * 107.74385 * 14 13 12 40 40 H 0.97003 * 119.99651 * 180.02562 * 19 18 16 41 41 H 1.09006 * 113.76907 * 221.15242 * 24 15 14 42 42 H 1.08998 * 113.77144 * 89.75420 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.7768 -0.3599 2.4947 6 6 2.3757 -1.1985 3.3546 7 6 3.0398 -2.1370 2.6629 8 6 2.8198 -1.8242 1.2433 9 6 3.3410 -2.5603 0.0777 10 8 3.0758 -2.1834 -1.0478 11 7 4.1115 -3.6510 0.2590 12 6 4.6301 -4.3823 -0.8997 13 6 5.4687 -5.5689 -0.4203 14 6 6.9397 -5.2142 -0.1376 15 7 7.2691 -6.4904 -0.8067 16 6 8.3255 -7.3598 -0.7470 17 1 8.2796 -8.3021 -1.2727 18 6 9.4551 -7.0300 -0.0109 19 7 9.4726 -5.9289 0.7100 20 14 10.9506 -8.1489 -0.0434 21 1 11.9099 -7.6634 -1.0677 22 1 11.6040 -8.1407 1.2902 23 1 10.5267 -9.5322 -0.3783 24 6 6.0022 -6.4525 -1.5625 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.3269 -1.1313 4.4314 33 1 3.6180 -2.9551 3.0665 34 1 4.3234 -3.9515 1.1566 35 1 3.7975 -4.7453 -1.5025 36 1 5.2512 -3.7181 -1.5005 37 1 4.9906 -6.1305 0.3822 38 1 7.2903 -4.3331 -0.6751 39 1 7.1910 -5.1951 0.9228 40 1 10.2622 -5.6983 1.2241 41 1 5.5063 -7.4203 -1.6376 42 1 6.0768 -5.9360 -2.5194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032215010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:48 Heat of formation + Delta-G solvation = 18.844527 kcal Electronic energy + Delta-G solvation = -22922.184205 eV Core-core repulsion = 19484.419494 eV Total energy + Delta-G solvation = -3437.764712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.72144 -39.35733 -37.91999 -35.72432 -34.31035 -32.96942 -32.10713 -29.38976 -28.72362 -27.38791 -26.05929 -24.79696 -23.45836 -22.64562 -21.85156 -20.51071 -19.94269 -18.89902 -17.70242 -16.71807 -16.33366 -15.89807 -15.81041 -15.15268 -15.04794 -14.70731 -14.62718 -14.01807 -13.69851 -13.44906 -13.32058 -13.02490 -12.86450 -12.77450 -12.42375 -12.33303 -11.52179 -11.44774 -11.39849 -11.33132 -11.13601 -10.99307 -10.73116 -10.55236 -10.00034 -9.91717 -9.76717 -9.67946 -9.42349 -8.87897 -8.79567 -8.63216 -6.87017 -5.79036 -3.10088 1.30878 1.94888 2.66648 3.38583 3.41130 3.43970 3.45706 3.46151 4.26284 4.45153 4.64418 4.76151 4.81377 4.89136 5.14637 5.18681 5.32225 5.32593 5.36752 5.39431 5.48385 5.57918 5.64513 5.69075 5.74544 5.84545 5.91196 5.99785 6.04087 6.11419 6.17948 6.26288 6.37360 6.58007 6.66478 6.77082 6.91718 7.21299 7.34021 7.55013 7.71225 7.96935 8.37817 9.03798 9.70000 10.60086 11.38769 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.002890 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.255120 B = 9685.157505 C =10132.932257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.146 4.146 4 C 0.084 3.916 5 O -0.175 6.175 6 C -0.043 4.043 7 C -0.186 4.186 8 C -0.241 4.241 9 C 0.587 3.413 10 O -0.549 6.549 11 N -0.713 5.713 12 C 0.131 3.869 13 C -0.154 4.154 14 C 0.172 3.828 15 N -0.613 5.613 16 C -0.224 4.224 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.128 3.872 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.207 0.793 33 H 0.159 0.841 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 12.068 4.004 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 C -0.203 4.203 4 C 0.031 3.969 5 O -0.071 6.071 6 C -0.109 4.109 7 C -0.205 4.205 8 C -0.245 4.245 9 C 0.375 3.625 10 O -0.430 6.430 11 N -0.362 5.362 12 C 0.007 3.993 13 C -0.174 4.174 14 C 0.046 3.954 15 N -0.339 5.339 16 C -0.351 4.351 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.002 3.998 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.224 0.776 33 H 0.176 0.824 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.012 12.419 3.393 22.140 hybrid contribution 1.325 -0.945 0.644 1.750 sum -16.687 11.474 4.037 20.650 Atomic orbital electron populations 1.21836 0.93540 1.02461 1.02400 1.20331 0.96475 0.96375 0.92175 1.21840 1.01734 0.94348 1.02382 1.22811 0.95940 0.94223 0.83975 1.83732 1.59498 1.48648 1.15191 1.23843 0.99490 0.92023 0.95504 1.22933 1.04069 1.02064 0.91462 1.21225 1.08451 1.00876 0.93966 1.17194 0.78052 0.79991 0.87274 1.90687 1.59960 1.67845 1.24469 1.45844 1.51118 1.28400 1.10867 1.21469 0.97187 0.93178 0.87451 1.23822 0.97469 0.95759 1.00367 1.22289 0.85844 0.88499 0.98731 1.45969 1.19224 1.22552 1.46175 1.19037 0.92348 0.96971 1.26793 0.90208 1.24821 0.97906 0.97639 1.00059 1.69833 1.28924 1.25272 1.32620 0.86133 0.83125 0.79708 0.77027 1.21617 1.21714 1.20552 1.22491 0.87536 0.96342 0.93452 0.91431 0.92235 0.92365 0.84973 0.92115 0.91421 0.92364 0.77649 0.82377 0.76373 0.91835 0.91272 0.89262 0.95288 0.91436 0.93661 0.93694 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.16 0.34 -0.93 16 2 C -0.04 -0.39 3.25 -91.77 -0.30 -0.68 16 3 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 4 C 0.08 1.02 5.88 -34.96 -0.21 0.81 16 5 O -0.17 -1.92 10.52 7.66 0.08 -1.84 16 6 C -0.04 -0.39 12.03 29.30 0.35 -0.04 16 7 C -0.19 -1.97 10.60 -37.45 -0.40 -2.37 16 8 C -0.24 -3.19 6.31 -103.28 -0.65 -3.84 16 9 C 0.59 9.02 7.81 -12.54 -0.10 8.92 16 10 O -0.55 -9.70 14.50 5.26 0.08 -9.62 16 11 N -0.71 -10.30 5.55 -61.40 -0.34 -10.64 16 12 C 0.13 2.07 5.51 -4.04 -0.02 2.05 16 13 C -0.15 -2.76 3.93 -89.69 -0.35 -3.11 16 14 C 0.17 3.96 6.99 -2.84 -0.02 3.94 16 15 N -0.61 -15.73 3.70 -177.71 -0.66 -16.39 16 16 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.25 11.51 55.49 0.64 -26.62 16 20 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.13 2.59 8.51 -2.97 -0.03 2.57 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.13 1.70 5.52 -51.93 -0.29 1.42 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.37 7.74 -52.48 -0.41 0.96 16 34 H 0.40 5.11 7.64 -40.82 -0.31 4.80 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.03 0.70 7.92 -51.92 -0.41 0.29 16 39 H 0.07 1.69 7.37 -51.93 -0.38 1.31 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -33.28 351.68 -7.62 -40.90 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.40 Total: 2.23 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.29 Total: -0.47 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.36 Total: -53.65 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.16 Total: -11.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.28 -7.62 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032215010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds