Wall clock time and date at job start Tue Mar 31 2020 06:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 C 1.50703 * 109.46874 * 120.00228 * 2 1 3 5 5 O 1.33654 * 125.79875 * 300.32255 * 4 2 1 6 6 C 1.34212 * 110.90762 * 180.13505 * 5 4 2 7 7 C 1.34178 * 109.12432 * 359.58460 * 6 5 4 8 8 C 1.36414 * 125.80332 * 120.00128 * 4 2 1 9 9 C 1.47381 * 127.19231 * 0.02562 * 8 4 2 10 10 O 1.21616 * 119.99992 * 0.02562 * 9 8 4 11 11 N 1.34769 * 119.99859 * 180.02562 * 9 8 4 12 12 C 1.46504 * 119.99728 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46997 * 179.97438 * 12 11 9 14 14 C 1.53942 * 113.74035 * 273.73483 * 13 12 11 15 15 N 1.47808 * 86.03798 * 222.08432 * 14 13 12 16 16 C 1.36942 * 134.45488 * 204.64235 * 15 14 13 17 17 H 1.07996 * 119.99485 * 173.34958 * 16 15 14 18 18 C 1.38808 * 120.00118 * 353.35014 * 16 15 14 19 19 N 1.31619 * 119.99996 * 5.06675 * 18 16 15 20 20 Si 1.86800 * 119.99918 * 185.06318 * 18 16 15 21 21 H 1.48495 * 109.47248 * 94.98581 * 20 18 16 22 22 H 1.48503 * 109.47098 * 214.98949 * 20 18 16 23 23 H 1.48506 * 109.47126 * 334.98598 * 20 18 16 24 24 C 1.47576 * 91.05062 * 24.55259 * 15 14 13 25 25 H 1.09001 * 109.47073 * 59.99942 * 1 2 3 26 26 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47208 * 300.00619 * 1 2 3 28 28 H 1.09002 * 109.46831 * 240.00028 * 2 1 3 29 29 H 1.08999 * 109.47318 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47078 * 300.00054 * 3 2 1 31 31 H 1.09007 * 109.47352 * 59.99788 * 3 2 1 32 32 H 1.08002 * 125.43719 * 179.85458 * 6 5 4 33 33 H 1.08004 * 127.02268 * 180.24063 * 7 6 5 34 34 H 0.96996 * 120.00688 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.46666 * 299.99260 * 12 11 9 36 36 H 1.08992 * 109.47984 * 59.99512 * 12 11 9 37 37 H 1.08996 * 112.94491 * 45.32859 * 13 12 11 38 38 H 1.09008 * 113.77112 * 336.35201 * 14 13 12 39 39 H 1.09002 * 113.76724 * 107.74385 * 14 13 12 40 40 H 0.97003 * 119.99651 * 180.02562 * 19 18 16 41 41 H 1.09006 * 113.76907 * 221.15242 * 24 15 14 42 42 H 1.08998 * 113.77144 * 89.75420 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.7768 -0.3599 2.4947 6 6 2.3757 -1.1985 3.3546 7 6 3.0398 -2.1370 2.6629 8 6 2.8198 -1.8242 1.2433 9 6 3.3410 -2.5603 0.0777 10 8 3.0758 -2.1834 -1.0478 11 7 4.1115 -3.6510 0.2590 12 6 4.6301 -4.3823 -0.8997 13 6 5.4687 -5.5689 -0.4203 14 6 6.9397 -5.2142 -0.1376 15 7 7.2691 -6.4904 -0.8067 16 6 8.3255 -7.3598 -0.7470 17 1 8.2796 -8.3021 -1.2727 18 6 9.4551 -7.0300 -0.0109 19 7 9.4726 -5.9289 0.7100 20 14 10.9506 -8.1489 -0.0434 21 1 11.9099 -7.6634 -1.0677 22 1 11.6040 -8.1407 1.2902 23 1 10.5267 -9.5322 -0.3783 24 6 6.0022 -6.4525 -1.5625 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.3269 -1.1313 4.4314 33 1 3.6180 -2.9551 3.0665 34 1 4.3234 -3.9515 1.1566 35 1 3.7975 -4.7453 -1.5025 36 1 5.2512 -3.7181 -1.5005 37 1 4.9906 -6.1305 0.3822 38 1 7.2903 -4.3331 -0.6751 39 1 7.1910 -5.1951 0.9228 40 1 10.2622 -5.6983 1.2241 41 1 5.5063 -7.4203 -1.6376 42 1 6.0768 -5.9360 -2.5194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032215010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:47 Heat of formation + Delta-G solvation = -2.549763 kcal Electronic energy + Delta-G solvation = -22923.111931 eV Core-core repulsion = 19484.419494 eV Total energy + Delta-G solvation = -3438.692438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.56529 -40.65419 -39.55185 -36.55655 -35.64959 -34.27590 -33.71122 -30.67397 -29.98809 -28.08787 -27.75513 -26.55989 -24.77233 -23.46926 -23.35458 -21.57286 -21.14308 -20.25652 -18.78956 -18.60805 -17.21287 -17.11947 -16.95948 -16.87490 -16.16904 -15.91525 -15.73579 -15.50651 -15.11276 -14.75086 -14.45496 -14.06586 -13.98195 -13.91260 -13.58798 -13.31708 -13.11382 -13.07002 -12.89079 -12.55195 -12.27052 -12.20665 -12.19757 -11.98666 -11.80773 -11.58230 -11.28511 -10.89738 -10.86071 -10.82156 -10.07501 -9.52807 -8.91578 -7.92987 -5.25227 0.34542 1.15189 1.44830 1.47025 1.55680 1.83316 2.27436 2.34407 2.46993 3.27579 3.39339 3.50188 3.70478 3.81419 3.86442 4.02488 4.08668 4.13638 4.34717 4.38153 4.56328 4.60875 4.70807 4.74625 4.77523 4.85418 4.86663 4.89302 4.92299 4.99205 5.09072 5.15035 5.24648 5.28789 5.29686 5.37675 5.48912 5.54277 5.63458 5.92540 6.06892 6.56064 6.91160 7.20613 7.59675 8.56179 9.24703 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.002890 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.255120 B = 9685.157505 C =10132.932257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C -0.141 4.141 4 C 0.080 3.920 5 O -0.176 6.176 6 C -0.029 4.029 7 C -0.201 4.201 8 C -0.270 4.270 9 C 0.584 3.416 10 O -0.579 6.579 11 N -0.708 5.708 12 C 0.143 3.857 13 C -0.115 4.115 14 C 0.169 3.831 15 N -0.645 5.645 16 C -0.237 4.237 17 H 0.084 0.916 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.977 3.023 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.250 0.750 33 H 0.174 0.826 34 H 0.411 0.589 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.011 0.989 39 H 0.041 0.959 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.387 12.005 4.773 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.058 4.058 3 C -0.198 4.198 4 C 0.026 3.974 5 O -0.071 6.071 6 C -0.094 4.094 7 C -0.220 4.220 8 C -0.274 4.274 9 C 0.373 3.627 10 O -0.461 6.461 11 N -0.358 5.358 12 C 0.019 3.981 13 C -0.135 4.135 14 C 0.044 3.956 15 N -0.372 5.372 16 C -0.365 4.365 17 H 0.102 0.898 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.805 3.195 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.190 1.190 24 C 0.001 3.999 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.192 0.808 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.430 12.341 4.159 23.391 hybrid contribution 1.710 -0.900 0.403 1.974 sum -17.721 11.440 4.562 21.581 Atomic orbital electron populations 1.21804 0.91897 1.02283 1.03657 1.20336 0.97833 0.96840 0.90815 1.21817 1.00809 0.93516 1.03688 1.23035 0.95543 0.93980 0.84838 1.83755 1.59560 1.48973 1.14853 1.24674 0.97408 0.90412 0.96866 1.23169 1.05231 1.03415 0.90227 1.21247 1.09864 1.01776 0.94532 1.17527 0.77641 0.79873 0.87630 1.90670 1.61077 1.68595 1.25787 1.45742 1.50900 1.28280 1.10917 1.21217 0.97009 0.92081 0.87807 1.23422 0.94593 0.95827 0.99661 1.22196 0.89440 0.87315 0.96676 1.46385 1.20139 1.22865 1.47797 1.19448 0.93286 0.97726 1.26069 0.89781 1.25663 1.00747 0.99401 1.00237 1.70013 1.29263 1.27112 1.33654 0.85077 0.79325 0.78527 0.76533 1.21712 1.21964 1.19018 1.22694 0.85252 0.97849 0.94064 0.89868 0.93110 0.91388 0.87419 0.93513 0.89816 0.91340 0.73446 0.80848 0.75313 0.90392 0.92830 0.87708 0.97124 0.94093 0.94261 0.91821 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.18 71.98 0.66 -1.61 16 2 C -0.04 -0.85 3.25 -11.54 -0.04 -0.89 16 3 C -0.14 -2.45 9.18 71.98 0.66 -1.79 16 4 C 0.08 1.89 5.88 25.26 0.15 2.03 16 5 O -0.18 -3.51 10.52 4.49 0.05 -3.47 16 6 C -0.03 -0.44 12.03 66.89 0.80 0.36 16 7 C -0.20 -3.94 10.60 23.65 0.25 -3.69 16 8 C -0.27 -7.03 6.31 -18.99 -0.12 -7.15 16 9 C 0.58 18.00 7.81 86.65 0.68 18.67 16 10 O -0.58 -20.83 14.50 -4.08 -0.06 -20.89 16 11 N -0.71 -20.15 5.55 -466.41 -2.59 -22.74 16 12 C 0.14 4.42 5.51 86.38 0.48 4.90 16 13 C -0.12 -4.02 3.93 -10.13 -0.04 -4.06 16 14 C 0.17 7.94 6.99 86.44 0.60 8.54 16 15 N -0.65 -33.19 3.70 -716.17 -2.65 -35.84 16 16 C -0.24 -13.40 10.70 84.03 0.90 -12.50 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.95 -57.67 11.51 21.65 0.25 -57.42 16 20 Si 0.98 45.90 29.56 68.60 2.03 47.93 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.13 4.96 8.51 86.49 0.74 5.69 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 2.86 5.52 -2.39 -0.01 2.85 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.25 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.17 2.70 7.74 -2.91 -0.02 2.67 16 34 H 0.41 10.13 7.64 -92.71 -0.71 9.42 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.85 7.87 -2.39 -0.02 1.83 16 37 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.01 0.55 7.92 -2.38 -0.02 0.53 16 39 H 0.04 2.12 7.37 -2.39 -0.02 2.10 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -73.04 351.68 3.52 -69.52 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.31 Total: 17.81 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.19 Total: 5.11 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.99 Total: -116.00 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.01 Total: -24.36 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.04 3.52 -69.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032215010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.969 kcal (2) G-P(sol) polarization free energy of solvation -73.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds