Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47528 * 2 1 4 4 C 1.40361 * 126.64731 * 265.13190 * 3 2 1 5 5 C 1.35131 * 107.11499 * 180.29363 * 4 3 2 6 6 O 1.33929 * 108.76475 * 359.74818 * 5 4 3 7 7 C 1.34907 * 109.38752 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21696 * 119.99733 * 187.11973 * 8 7 6 10 10 N 1.34774 * 120.00220 * 7.12473 * 8 7 6 11 11 C 1.46503 * 119.99900 * 5.49123 * 10 8 7 12 12 C 1.46497 * 120.00390 * 185.49308 * 10 8 7 13 13 H 1.09008 * 110.88436 * 356.11623 * 12 10 8 14 14 C 1.55156 * 111.00557 * 119.99504 * 12 10 8 15 15 C 1.54326 * 102.93809 * 82.57425 * 14 12 10 16 16 N 1.47016 * 107.27354 * 22.19322 * 15 14 12 17 17 C 1.36940 * 125.65283 * 181.01684 * 16 15 14 18 18 H 1.08001 * 120.00309 * 174.62274 * 17 16 15 19 19 C 1.38814 * 119.99207 * 354.62829 * 17 16 15 20 20 N 1.31619 * 119.99270 * 210.82614 * 19 17 16 21 21 Si 1.86800 * 120.00500 * 31.10738 * 19 17 16 22 22 H 1.48496 * 109.47087 * 173.99407 * 21 19 17 23 23 H 1.48499 * 109.46754 * 293.99192 * 21 19 17 24 24 H 1.48501 * 109.46964 * 53.99396 * 21 19 17 25 25 C 1.47432 * 108.70418 * 1.28871 * 16 15 14 26 26 H 1.08999 * 109.47084 * 300.00322 * 1 2 3 27 27 H 1.09003 * 109.46825 * 60.00135 * 1 2 3 28 28 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46963 * 240.00119 * 2 1 3 30 30 H 1.09005 * 109.47032 * 120.00358 * 2 1 3 31 31 H 1.08000 * 126.44517 * 0.04734 * 4 3 2 32 32 H 1.08002 * 125.61951 * 179.77908 * 5 4 3 33 33 H 1.08995 * 109.47338 * 275.32172 * 11 10 8 34 34 H 1.09004 * 109.47135 * 35.31458 * 11 10 8 35 35 H 1.08995 * 109.47353 * 155.31580 * 11 10 8 36 36 H 1.08998 * 110.72164 * 324.21390 * 14 12 10 37 37 H 1.08993 * 110.87317 * 201.00605 * 14 12 10 38 38 H 1.09000 * 109.88019 * 262.77565 * 15 14 12 39 39 H 1.08999 * 110.00572 * 141.68309 * 15 14 12 40 40 H 0.96999 * 120.00438 * 5.29880 * 20 19 17 41 41 H 1.08993 * 110.36952 * 94.47852 * 25 16 15 42 42 H 1.09004 * 110.36524 * 216.80896 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4018 2.1788 -1.1221 5 6 2.7965 3.3900 -0.6714 6 8 2.6819 3.4115 0.6628 7 6 2.2135 2.2212 1.0913 8 6 1.9522 1.8492 2.4857 9 8 1.6528 0.7029 2.7638 10 7 2.0435 2.7769 3.4591 11 6 2.2849 4.1800 3.1134 12 6 1.9013 2.3824 4.8628 13 1 1.6592 1.3228 4.9460 14 6 3.1817 2.7253 5.6692 15 6 2.9867 4.2180 6.0089 16 7 1.5461 4.4998 5.9270 17 6 0.9578 5.7181 6.1391 18 1 -0.1016 5.8429 5.9703 19 6 1.7233 6.7925 6.5711 20 7 1.1831 7.7222 7.3302 21 14 3.5176 6.9231 6.0685 22 1 4.0684 8.2216 6.5327 23 1 4.2860 5.8112 6.6837 24 1 3.6248 6.8402 4.5897 25 6 0.8390 3.2522 5.5850 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3791 1.8537 -2.1517 32 1 3.1462 4.2065 -1.2858 33 1 3.3554 4.3454 2.9926 34 1 1.7731 4.4177 2.1808 35 1 1.9058 4.8207 3.9095 36 1 4.0726 2.5821 5.0578 37 1 3.2396 2.1273 6.5786 38 1 3.5266 4.8352 5.2908 39 1 3.3474 4.4212 7.0172 40 1 0.2737 7.6183 7.6513 41 1 0.4889 2.7544 6.4892 42 1 0.0028 3.4608 4.9176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033399524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 25.654039 kcal Electronic energy + Delta-G solvation = -24590.945450 eV Core-core repulsion = 21153.476021 eV Total energy + Delta-G solvation = -3437.469429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.78786 -39.80563 -37.79191 -35.25411 -34.23060 -32.46172 -31.41969 -30.04939 -29.24594 -28.39794 -26.25912 -24.50489 -23.65500 -22.67883 -21.59444 -20.74117 -19.86710 -19.00803 -17.53098 -17.43737 -16.67933 -16.30805 -15.91548 -15.15238 -14.85571 -14.48689 -14.36261 -13.89281 -13.51217 -13.40925 -13.23452 -13.01566 -12.79255 -12.60283 -12.45631 -12.19007 -11.82207 -11.62462 -11.42205 -11.31308 -11.07943 -11.00604 -10.85109 -10.75831 -10.11524 -9.89874 -9.78561 -9.66675 -9.07788 -8.76348 -8.52636 -8.29200 -7.10800 -6.41527 -3.21173 1.06634 2.26614 2.69987 3.20190 3.29543 3.39638 3.47161 3.66772 4.53584 4.59969 4.64621 4.72519 4.90595 5.11117 5.20678 5.22980 5.31917 5.37450 5.39845 5.51833 5.55177 5.61014 5.65036 5.81005 5.85170 5.91477 5.94718 6.03679 6.16168 6.21395 6.22240 6.25036 6.33304 6.44430 6.49072 6.61253 6.74986 6.77686 6.97965 7.55666 7.64718 8.19203 8.27967 8.97146 9.52917 10.19026 11.06222 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.004870 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.175415 B = 5748.378203 C = 6286.868462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.092 4.092 4 C -0.225 4.225 5 C -0.014 4.014 6 O -0.153 6.153 7 C -0.071 4.071 8 C 0.596 3.404 9 O -0.529 6.529 10 N -0.581 5.581 11 C 0.056 3.944 12 C 0.121 3.879 13 H 0.109 0.891 14 C -0.140 4.140 15 C 0.114 3.886 16 N -0.608 5.608 17 C -0.343 4.343 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.906 5.906 21 Si 1.035 2.965 22 H -0.299 1.299 23 H -0.278 1.278 24 H -0.295 1.295 25 C 0.130 3.870 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.207 0.793 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.028 0.972 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.041 0.959 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -12.271 -15.465 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.095 4.095 4 C -0.244 4.244 5 C -0.084 4.084 6 O -0.048 6.048 7 C -0.123 4.123 8 C 0.385 3.615 9 O -0.409 6.409 10 N -0.311 5.311 11 C -0.087 4.087 12 C 0.017 3.983 13 H 0.126 0.874 14 C -0.179 4.179 15 C -0.011 4.011 16 N -0.336 5.336 17 C -0.469 4.469 18 H 0.098 0.902 19 C -0.210 4.210 20 N -0.544 5.544 21 Si 0.866 3.134 22 H -0.227 1.227 23 H -0.205 1.205 24 H -0.223 1.223 25 C 0.003 3.997 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.170 0.830 32 H 0.224 0.776 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.727 -11.522 -14.949 19.457 hybrid contribution -1.204 -0.730 -0.583 1.524 sum 3.523 -12.251 -15.533 20.094 Atomic orbital electron populations 1.21637 0.94545 1.01652 1.01859 1.20125 0.96207 0.90301 1.03319 1.20583 1.00200 0.97629 0.91039 1.21678 1.08100 0.94611 0.99988 1.24402 1.02511 0.99975 0.81499 1.84355 1.64476 1.33482 1.22477 1.21920 1.10216 0.85176 0.95031 1.16708 0.77896 0.85031 0.81910 1.90794 1.49723 1.18951 1.81454 1.47635 1.68879 1.08661 1.05921 1.22447 1.01062 0.81480 1.03680 1.22411 0.96845 1.00065 0.78996 0.87350 1.22973 0.97339 0.97752 0.99787 1.22015 0.87045 0.92975 0.99069 1.44913 1.00464 1.05164 1.83048 1.19964 0.94651 0.86689 1.45559 0.90188 1.25568 1.04919 0.94238 0.96321 1.70905 1.16258 1.39120 1.28158 0.84437 0.77558 0.75013 0.76346 1.22668 1.20487 1.22284 1.21945 0.93874 0.87536 0.96366 0.92343 0.93156 0.92353 0.91321 0.89085 0.82996 0.77647 0.93163 0.91596 0.85754 0.91194 0.90050 0.95454 0.93507 0.92491 0.94104 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.15 0.37 -1.20 16 2 C -0.06 -0.74 5.80 -27.89 -0.16 -0.90 16 3 C -0.09 -1.20 5.45 -104.44 -0.57 -1.77 16 4 C -0.22 -2.37 10.83 -39.89 -0.43 -2.80 16 5 C -0.01 -0.14 12.08 29.63 0.36 0.22 16 6 O -0.15 -2.12 7.57 5.02 0.04 -2.09 16 7 C -0.07 -1.09 6.68 -36.80 -0.25 -1.33 16 8 C 0.60 10.17 7.63 -12.86 -0.10 10.08 16 9 O -0.53 -9.60 14.22 5.19 0.07 -9.53 16 10 N -0.58 -10.14 2.91 -172.89 -0.50 -10.64 16 11 C 0.06 0.99 7.65 59.85 0.46 1.45 16 12 C 0.12 2.10 3.67 -65.66 -0.24 1.86 16 13 H 0.11 1.79 7.02 -51.92 -0.36 1.43 16 14 C -0.14 -2.36 6.48 -24.90 -0.16 -2.52 16 15 C 0.11 2.38 3.52 -3.07 -0.01 2.37 16 16 N -0.61 -14.13 1.85 -169.93 -0.31 -14.44 16 17 C -0.34 -9.35 9.96 -15.06 -0.15 -9.50 16 18 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 19 C -0.01 -0.24 5.45 -17.43 -0.10 -0.33 16 20 N -0.91 -27.58 13.70 55.49 0.76 -26.82 16 21 Si 1.03 25.16 24.86 -169.99 -4.23 20.93 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.28 -6.21 5.09 56.52 0.29 -5.93 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.13 2.56 6.47 -2.41 -0.02 2.55 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.23 6.60 -51.93 -0.34 0.88 16 31 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.07 1.10 6.02 -51.93 -0.31 0.79 16 35 H 0.12 2.62 4.40 -51.93 -0.23 2.39 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.60 3.85 -51.93 -0.20 0.40 16 39 H 0.05 1.05 6.48 -51.93 -0.34 0.71 16 40 H 0.27 8.00 8.73 -40.82 -0.36 7.65 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -31.19 326.51 -6.37 -37.56 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.12 Total: 1.93 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.00 Total: -1.83 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.06 Total: -51.90 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.11 Total: -11.61 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.23 Total: 20.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.19 -6.37 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.218 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds