Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47528 * 2 1 4 4 C 1.40361 * 126.64731 * 265.13190 * 3 2 1 5 5 C 1.35131 * 107.11499 * 180.29363 * 4 3 2 6 6 O 1.33929 * 108.76475 * 359.74818 * 5 4 3 7 7 C 1.34907 * 109.38752 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98797 * 179.97438 * 7 6 5 9 9 O 1.21696 * 119.99733 * 187.11973 * 8 7 6 10 10 N 1.34774 * 120.00220 * 7.12473 * 8 7 6 11 11 C 1.46503 * 119.99900 * 5.49123 * 10 8 7 12 12 C 1.46497 * 120.00390 * 185.49308 * 10 8 7 13 13 H 1.09008 * 110.88436 * 356.11623 * 12 10 8 14 14 C 1.55156 * 111.00557 * 119.99504 * 12 10 8 15 15 C 1.54326 * 102.93809 * 82.57425 * 14 12 10 16 16 N 1.47016 * 107.27354 * 22.19322 * 15 14 12 17 17 C 1.36940 * 125.65283 * 181.01684 * 16 15 14 18 18 H 1.08001 * 120.00309 * 174.62274 * 17 16 15 19 19 C 1.38814 * 119.99207 * 354.62829 * 17 16 15 20 20 N 1.31619 * 119.99270 * 210.82614 * 19 17 16 21 21 Si 1.86800 * 120.00500 * 31.10738 * 19 17 16 22 22 H 1.48496 * 109.47087 * 173.99407 * 21 19 17 23 23 H 1.48499 * 109.46754 * 293.99192 * 21 19 17 24 24 H 1.48501 * 109.46964 * 53.99396 * 21 19 17 25 25 C 1.47432 * 108.70418 * 1.28871 * 16 15 14 26 26 H 1.08999 * 109.47084 * 300.00322 * 1 2 3 27 27 H 1.09003 * 109.46825 * 60.00135 * 1 2 3 28 28 H 1.08995 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46963 * 240.00119 * 2 1 3 30 30 H 1.09005 * 109.47032 * 120.00358 * 2 1 3 31 31 H 1.08000 * 126.44517 * 0.04734 * 4 3 2 32 32 H 1.08002 * 125.61951 * 179.77908 * 5 4 3 33 33 H 1.08995 * 109.47338 * 275.32172 * 11 10 8 34 34 H 1.09004 * 109.47135 * 35.31458 * 11 10 8 35 35 H 1.08995 * 109.47353 * 155.31580 * 11 10 8 36 36 H 1.08998 * 110.72164 * 324.21390 * 14 12 10 37 37 H 1.08993 * 110.87317 * 201.00605 * 14 12 10 38 38 H 1.09000 * 109.88019 * 262.77565 * 15 14 12 39 39 H 1.08999 * 110.00572 * 141.68309 * 15 14 12 40 40 H 0.96999 * 120.00438 * 5.29880 * 20 19 17 41 41 H 1.08993 * 110.36952 * 94.47852 * 25 16 15 42 42 H 1.09004 * 110.36524 * 216.80896 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4018 2.1788 -1.1221 5 6 2.7965 3.3900 -0.6714 6 8 2.6819 3.4115 0.6628 7 6 2.2135 2.2212 1.0913 8 6 1.9522 1.8492 2.4857 9 8 1.6528 0.7029 2.7638 10 7 2.0435 2.7769 3.4591 11 6 2.2849 4.1800 3.1134 12 6 1.9013 2.3824 4.8628 13 1 1.6592 1.3228 4.9460 14 6 3.1817 2.7253 5.6692 15 6 2.9867 4.2180 6.0089 16 7 1.5461 4.4998 5.9270 17 6 0.9578 5.7181 6.1391 18 1 -0.1016 5.8429 5.9703 19 6 1.7233 6.7925 6.5711 20 7 1.1831 7.7222 7.3302 21 14 3.5176 6.9231 6.0685 22 1 4.0684 8.2216 6.5327 23 1 4.2860 5.8112 6.6837 24 1 3.6248 6.8402 4.5897 25 6 0.8390 3.2522 5.5850 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.3791 1.8537 -2.1517 32 1 3.1462 4.2065 -1.2858 33 1 3.3554 4.3454 2.9926 34 1 1.7731 4.4177 2.1808 35 1 1.9058 4.8207 3.9095 36 1 4.0726 2.5821 5.0578 37 1 3.2396 2.1273 6.5786 38 1 3.5266 4.8352 5.2908 39 1 3.3474 4.4212 7.0172 40 1 0.2737 7.6183 7.6513 41 1 0.4889 2.7544 6.4892 42 1 0.0028 3.4608 4.9176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033399524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = 6.267419 kcal Electronic energy + Delta-G solvation = -24591.786117 eV Core-core repulsion = 21153.476021 eV Total energy + Delta-G solvation = -3438.310096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72750 -41.18039 -39.27319 -36.41591 -35.57613 -34.37261 -32.34412 -31.64670 -30.51024 -29.84379 -27.70278 -25.99089 -25.00534 -23.78253 -22.70386 -22.41237 -21.09962 -20.20621 -19.53644 -18.65342 -17.89090 -17.44637 -17.22860 -16.67625 -16.14619 -15.90115 -15.46236 -15.31498 -15.22493 -14.75192 -14.43334 -14.36497 -14.07122 -13.64998 -13.59328 -13.39914 -13.30400 -13.27746 -13.00260 -12.65424 -12.47849 -12.40773 -12.26686 -11.97796 -11.83056 -11.72796 -11.09984 -10.94426 -10.67480 -10.53828 -9.94355 -9.54487 -9.05552 -8.65431 -5.37088 0.03486 1.41931 1.45299 1.52221 1.64827 1.72925 2.01265 2.14975 2.58660 2.96821 3.34244 3.49914 3.70334 3.76241 3.78892 3.87174 4.12709 4.24349 4.33170 4.40336 4.44799 4.46389 4.53604 4.56106 4.63077 4.73673 4.80665 4.82768 4.87220 4.91962 4.97329 5.05635 5.12378 5.18795 5.30003 5.32185 5.39468 5.53031 5.58921 5.94752 6.09019 6.27113 6.82374 6.91783 7.46620 8.12746 8.83333 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.004870 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.175415 B = 5748.378203 C = 6286.868462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.086 4.086 4 C -0.229 4.229 5 C 0.002 3.998 6 O -0.171 6.171 7 C -0.116 4.116 8 C 0.595 3.405 9 O -0.549 6.549 10 N -0.588 5.588 11 C 0.068 3.932 12 C 0.131 3.869 13 H 0.121 0.879 14 C -0.126 4.126 15 C 0.108 3.892 16 N -0.620 5.620 17 C -0.326 4.326 18 H 0.047 0.953 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 1.074 2.926 22 H -0.314 1.314 23 H -0.244 1.244 24 H -0.276 1.276 25 C 0.128 3.872 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.184 0.816 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.251 0.749 41 H 0.049 0.951 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -14.010 -18.235 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.089 4.089 4 C -0.248 4.248 5 C -0.067 4.067 6 O -0.066 6.066 7 C -0.167 4.167 8 C 0.386 3.614 9 O -0.430 6.430 10 N -0.318 5.318 11 C -0.075 4.075 12 C 0.026 3.974 13 H 0.139 0.861 14 C -0.164 4.164 15 C -0.016 4.016 16 N -0.348 5.348 17 C -0.454 4.454 18 H 0.065 0.935 19 C -0.258 4.258 20 N -0.587 5.587 21 Si 0.900 3.100 22 H -0.243 1.243 23 H -0.169 1.169 24 H -0.202 1.202 25 C 0.002 3.998 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.202 0.798 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.707 -13.322 -17.740 23.177 hybrid contribution -1.945 -0.239 0.132 1.964 sum 4.762 -13.560 -17.608 22.729 Atomic orbital electron populations 1.21597 0.94258 1.02403 1.01001 1.20176 0.96391 0.89868 1.03636 1.20967 0.98555 0.97947 0.91479 1.22054 1.07739 0.94250 1.00723 1.25365 0.99969 1.01070 0.80294 1.84305 1.64907 1.33088 1.24339 1.21640 1.13910 0.86625 0.94501 1.16947 0.77126 0.84639 0.82703 1.90770 1.50580 1.19536 1.82091 1.47663 1.69501 1.08620 1.06032 1.22215 1.01404 0.81184 1.02655 1.22291 0.96076 0.99865 0.79120 0.86147 1.22950 0.97607 0.94890 1.00995 1.22102 0.85246 0.95942 0.98314 1.44879 1.02115 1.04727 1.83124 1.19789 0.93319 0.88679 1.43582 0.93470 1.26764 1.08525 0.94173 0.96290 1.71017 1.15865 1.40731 1.31122 0.83982 0.73480 0.75247 0.77274 1.24286 1.16909 1.20219 1.22036 0.94234 0.86791 0.96708 0.95220 0.91870 0.90875 0.88552 0.91152 0.79841 0.73431 0.92305 0.90951 0.88989 0.89296 0.87695 0.95462 0.94639 0.94048 0.93317 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.89 71.98 0.71 -2.11 16 2 C -0.06 -1.37 5.80 29.85 0.17 -1.20 16 3 C -0.09 -2.07 5.45 -19.74 -0.11 -2.17 16 4 C -0.23 -3.92 10.83 22.07 0.24 -3.68 16 5 C 0.00 0.04 12.08 67.10 0.81 0.85 16 6 O -0.17 -4.34 7.57 -4.95 -0.04 -4.38 16 7 C -0.12 -3.34 6.68 24.07 0.16 -3.18 16 8 C 0.60 19.86 7.63 86.44 0.66 20.52 16 9 O -0.55 -19.64 14.22 -4.34 -0.06 -19.70 16 10 N -0.59 -19.93 2.91 -819.12 -2.39 -22.32 16 11 C 0.07 2.36 7.65 127.77 0.98 3.34 16 12 C 0.13 4.35 3.67 46.46 0.17 4.52 16 13 H 0.12 3.78 7.02 -2.38 -0.02 3.76 16 14 C -0.13 -3.91 6.48 31.78 0.21 -3.71 16 15 C 0.11 4.35 3.52 86.73 0.31 4.65 16 16 N -0.62 -28.89 1.85 -691.54 -1.28 -30.17 16 17 C -0.33 -18.34 9.96 84.03 0.84 -17.50 16 18 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 19 C -0.06 -3.59 5.45 84.86 0.46 -3.12 16 20 N -0.95 -59.74 13.70 21.65 0.30 -59.44 16 21 Si 1.07 50.80 24.86 68.60 1.71 52.50 16 22 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 23 H -0.24 -10.20 5.09 99.48 0.51 -9.69 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 C 0.13 5.07 6.47 86.93 0.56 5.64 16 26 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.07 1.83 6.60 -2.38 -0.02 1.81 16 31 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.25 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.06 1.90 8.11 -2.39 -0.02 1.88 16 34 H 0.07 2.37 6.02 -2.38 -0.01 2.36 16 35 H 0.09 3.84 4.40 -2.39 -0.01 3.83 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.03 1.13 3.85 -2.39 -0.01 1.12 16 39 H 0.04 1.52 6.48 -2.39 -0.02 1.51 16 40 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -70.80 326.51 5.19 -65.62 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.78 Total: 15.07 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 6.17 Total: 2.84 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -3.37 Total: -111.94 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.10 Total: -24.09 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.71 Total: 52.50 kcal Total: -70.80 5.19 -65.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.884 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds