Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47259 * 2 1 4 4 C 1.50703 * 109.47096 * 120.00233 * 2 1 3 5 5 C 1.40364 * 126.64369 * 299.97255 * 4 2 1 6 6 C 1.35129 * 107.11502 * 180.02562 * 5 4 2 7 7 O 1.33931 * 108.76681 * 0.22794 * 6 5 4 8 8 C 1.34919 * 109.38446 * 359.62418 * 7 6 5 9 9 C 1.46660 * 125.98720 * 180.18191 * 8 7 6 10 10 O 1.21696 * 119.99801 * 172.74418 * 9 8 7 11 11 N 1.34777 * 119.99898 * 352.74379 * 9 8 7 12 12 C 1.46493 * 120.00052 * 3.53783 * 11 9 8 13 13 C 1.46499 * 119.99679 * 183.53759 * 11 9 8 14 14 C 1.53939 * 113.74305 * 218.74225 * 13 11 9 15 15 N 1.47813 * 86.03707 * 222.08605 * 14 13 11 16 16 C 1.36939 * 134.45437 * 204.64441 * 15 14 13 17 17 H 1.08009 * 119.99880 * 174.52086 * 16 15 14 18 18 C 1.38811 * 120.00256 * 354.51700 * 16 15 14 19 19 N 1.31618 * 119.99611 * 5.01391 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 185.01484 * 18 16 15 21 21 H 1.48498 * 109.47184 * 94.99554 * 20 18 16 22 22 H 1.48496 * 109.47358 * 214.99983 * 20 18 16 23 23 H 1.48499 * 109.47131 * 334.99922 * 20 18 16 24 24 C 1.47577 * 91.05105 * 24.54913 * 15 14 13 25 25 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46976 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.46792 * 59.99903 * 1 2 3 28 28 H 1.09001 * 109.46976 * 240.00013 * 2 1 3 29 29 H 1.08999 * 109.47354 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47569 * 300.00134 * 3 2 1 31 31 H 1.09001 * 109.47116 * 60.00099 * 3 2 1 32 32 H 1.08004 * 126.44500 * 0.02562 * 5 4 2 33 33 H 1.07999 * 125.62004 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47068 * 83.94027 * 12 11 9 35 35 H 1.08999 * 109.47185 * 203.93412 * 12 11 9 36 36 H 1.08999 * 109.47608 * 323.94264 * 12 11 9 37 37 H 1.08998 * 112.94521 * 350.33512 * 13 11 9 38 38 H 1.09000 * 113.77053 * 336.35003 * 14 13 11 39 39 H 1.08996 * 113.77052 * 107.74675 * 14 13 11 40 40 H 0.97010 * 119.99483 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.77278 * 221.15286 * 24 15 14 42 42 H 1.08997 * 113.77162 * 89.75289 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.7812 -0.3543 2.5647 6 6 2.4189 -1.2556 3.3437 7 8 3.0482 -2.1373 2.5560 8 6 2.8205 -1.8250 1.2633 9 6 3.3336 -2.5524 0.0978 10 8 2.9544 -2.2557 -1.0199 11 7 4.2250 -3.5495 0.2645 12 6 4.6227 -3.9583 1.6138 13 6 4.7960 -4.2243 -0.9037 14 6 4.9710 -5.7425 -0.7184 15 7 6.2796 -5.5693 -1.3834 16 6 7.1089 -6.3924 -2.0975 17 1 7.9962 -5.9913 -2.5650 18 6 6.8094 -7.7422 -2.2206 19 7 5.6797 -8.2123 -1.7358 20 14 8.0097 -8.8913 -3.0740 21 1 8.8798 -9.5398 -2.0604 22 1 7.2551 -9.9319 -3.8175 23 1 8.8483 -8.1154 -4.0226 24 6 6.3324 -4.1533 -0.9709 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.1894 0.4827 2.9048 33 1 2.4241 -1.2615 4.4237 34 1 3.8922 -4.6638 2.0099 35 1 5.6029 -4.4337 1.5753 36 1 4.6690 -3.0820 2.2603 37 1 4.3028 -3.9500 -1.8362 38 1 5.0454 -6.0522 0.3240 39 1 4.2614 -6.3396 -1.2912 40 1 5.4702 -9.1556 -1.8222 41 1 6.7078 -3.4839 -1.7448 42 1 6.8076 -3.9951 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043620000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = 39.306150 kcal Electronic energy + Delta-G solvation = -23762.527491 eV Core-core repulsion = 20325.650062 eV Total energy + Delta-G solvation = -3436.877429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.80395 -39.60909 -37.67300 -36.20591 -34.40999 -32.08016 -31.81131 -29.82856 -27.67189 -27.17784 -26.67397 -24.84204 -24.21307 -22.77126 -22.19605 -20.58668 -19.34488 -18.71869 -17.38155 -16.87917 -16.48838 -16.32134 -15.80732 -15.00272 -14.71514 -14.61005 -14.00018 -13.88164 -13.81538 -13.33478 -13.24988 -12.91101 -12.72950 -12.47022 -12.29494 -11.87728 -11.74236 -11.57169 -11.35828 -11.28634 -11.27975 -10.95657 -10.84098 -10.73128 -10.29563 -10.06379 -9.77636 -9.63614 -9.57887 -8.82452 -8.70281 -8.14827 -6.92903 -5.81810 -3.14136 1.10084 2.28922 2.70187 3.27558 3.34401 3.38899 3.44191 3.45751 4.43943 4.53174 4.59853 4.72724 5.09987 5.16086 5.17938 5.26485 5.40166 5.43175 5.47797 5.53528 5.55957 5.56898 5.72693 5.75800 5.86206 5.90503 5.95996 6.01259 6.12576 6.16047 6.20868 6.27849 6.39461 6.44676 6.55284 6.74320 6.86863 7.17172 7.30066 7.49379 7.67041 7.92469 8.29236 8.99807 9.66050 10.53065 11.35759 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.003423 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.216928 B = 8177.008705 C = 8569.068626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.084 4.084 5 C -0.219 4.219 6 C -0.020 4.020 7 O -0.155 6.155 8 C -0.070 4.070 9 C 0.595 3.405 10 O -0.524 6.524 11 N -0.587 5.587 12 C 0.074 3.926 13 C 0.089 3.911 14 C 0.159 3.841 15 N -0.606 5.606 16 C -0.225 4.225 17 H 0.083 0.917 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.150 0.850 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 16.674 11.151 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.195 4.195 4 C -0.087 4.087 5 C -0.238 4.238 6 C -0.090 4.090 7 O -0.051 6.051 8 C -0.122 4.122 9 C 0.383 3.617 10 O -0.404 6.404 11 N -0.318 5.318 12 C -0.068 4.068 13 C -0.015 4.015 14 C 0.033 3.967 15 N -0.332 5.332 16 C -0.352 4.352 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.018 4.018 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.222 0.778 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.535 16.221 10.475 21.111 hybrid contribution 0.586 -0.610 0.079 0.849 sum -7.949 15.611 10.554 20.452 Atomic orbital electron populations 1.21749 0.94333 1.01918 1.01396 1.19991 0.95724 0.95604 0.95697 1.21771 1.01161 0.95116 1.01476 1.20538 0.97471 0.94789 0.95885 1.21615 1.06597 1.03271 0.92331 1.24362 0.96854 0.90710 0.97078 1.84343 1.57780 1.47003 1.15981 1.22057 1.07119 1.00738 0.82324 1.16751 0.79282 0.79774 0.85905 1.90777 1.59614 1.66881 1.23095 1.47983 1.41652 1.33709 1.08460 1.21981 1.01725 1.00830 0.82291 1.24184 0.93927 0.95245 0.88104 1.22636 0.88419 0.89397 0.96225 1.45684 1.20921 1.06482 1.60134 1.19005 1.03199 0.88696 1.24318 0.89956 1.24829 0.97753 0.96632 1.01021 1.69836 1.22683 1.13665 1.50283 0.86082 0.80119 0.80712 0.78765 1.21585 1.21630 1.20467 1.22979 0.92952 0.88450 0.97458 0.92602 0.93026 0.92306 0.87122 0.92724 0.92280 0.92977 0.83196 0.77786 0.92314 0.89914 0.90573 0.86351 0.94779 0.90654 0.93518 0.93354 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.09 37.16 0.34 -1.07 16 2 C -0.05 -0.63 3.19 -91.77 -0.29 -0.93 16 3 C -0.14 -1.39 9.09 37.15 0.34 -1.06 16 4 C -0.08 -1.07 4.87 -104.43 -0.51 -1.58 16 5 C -0.22 -2.17 10.41 -39.89 -0.42 -2.59 16 6 C -0.02 -0.19 12.08 29.63 0.36 0.17 16 7 O -0.16 -1.90 7.30 4.98 0.04 -1.87 16 8 C -0.07 -1.03 6.76 -36.80 -0.25 -1.27 16 9 C 0.60 10.33 7.64 -12.86 -0.10 10.23 16 10 O -0.52 -10.27 13.92 5.19 0.07 -10.20 16 11 N -0.59 -10.16 3.09 -177.31 -0.55 -10.70 16 12 C 0.07 1.07 8.33 59.84 0.50 1.57 16 13 C 0.09 1.79 4.41 -70.15 -0.31 1.48 16 14 C 0.16 3.76 6.87 -2.84 -0.02 3.75 16 15 N -0.61 -15.61 3.70 -177.90 -0.66 -16.27 16 16 C -0.22 -6.31 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.15 11.48 55.49 0.64 -26.51 16 20 Si 0.91 22.08 29.56 -169.99 -5.02 17.05 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.11 2.28 8.43 -2.97 -0.03 2.25 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.11 1.66 5.52 -51.93 -0.29 1.37 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 32 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.24 6.13 -51.93 -0.32 0.92 16 36 H 0.08 0.96 5.41 -51.93 -0.28 0.68 16 37 H 0.12 2.55 7.20 -51.93 -0.37 2.18 16 38 H 0.03 0.80 6.69 -51.93 -0.35 0.45 16 39 H 0.08 1.99 7.31 -51.93 -0.38 1.61 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -32.21 340.15 -7.11 -39.32 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.11 Total: -0.17 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.64 Total: 4.23 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.57 Total: -53.49 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.11 Total: -12.07 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.21 -7.11 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043620000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.627 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds