Wall clock time and date at job start Tue Mar 31 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47259 * 2 1 4 4 C 1.50703 * 109.47096 * 120.00233 * 2 1 3 5 5 C 1.40364 * 126.64369 * 299.97255 * 4 2 1 6 6 C 1.35129 * 107.11502 * 180.02562 * 5 4 2 7 7 O 1.33931 * 108.76681 * 0.22794 * 6 5 4 8 8 C 1.34919 * 109.38446 * 359.62418 * 7 6 5 9 9 C 1.46660 * 125.98720 * 180.18191 * 8 7 6 10 10 O 1.21696 * 119.99801 * 172.74418 * 9 8 7 11 11 N 1.34777 * 119.99898 * 352.74379 * 9 8 7 12 12 C 1.46493 * 120.00052 * 3.53783 * 11 9 8 13 13 C 1.46499 * 119.99679 * 183.53759 * 11 9 8 14 14 C 1.53939 * 113.74305 * 218.74225 * 13 11 9 15 15 N 1.47813 * 86.03707 * 222.08605 * 14 13 11 16 16 C 1.36939 * 134.45437 * 204.64441 * 15 14 13 17 17 H 1.08009 * 119.99880 * 174.52086 * 16 15 14 18 18 C 1.38811 * 120.00256 * 354.51700 * 16 15 14 19 19 N 1.31618 * 119.99611 * 5.01391 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 185.01484 * 18 16 15 21 21 H 1.48498 * 109.47184 * 94.99554 * 20 18 16 22 22 H 1.48496 * 109.47358 * 214.99983 * 20 18 16 23 23 H 1.48499 * 109.47131 * 334.99922 * 20 18 16 24 24 C 1.47577 * 91.05105 * 24.54913 * 15 14 13 25 25 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46976 * 299.99987 * 1 2 3 27 27 H 1.09000 * 109.46792 * 59.99903 * 1 2 3 28 28 H 1.09001 * 109.46976 * 240.00013 * 2 1 3 29 29 H 1.08999 * 109.47354 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47569 * 300.00134 * 3 2 1 31 31 H 1.09001 * 109.47116 * 60.00099 * 3 2 1 32 32 H 1.08004 * 126.44500 * 0.02562 * 5 4 2 33 33 H 1.07999 * 125.62004 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47068 * 83.94027 * 12 11 9 35 35 H 1.08999 * 109.47185 * 203.93412 * 12 11 9 36 36 H 1.08999 * 109.47608 * 323.94264 * 12 11 9 37 37 H 1.08998 * 112.94521 * 350.33512 * 13 11 9 38 38 H 1.09000 * 113.77053 * 336.35003 * 14 13 11 39 39 H 1.08996 * 113.77052 * 107.74675 * 14 13 11 40 40 H 0.97010 * 119.99483 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.77278 * 221.15286 * 24 15 14 42 42 H 1.08997 * 113.77162 * 89.75289 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.7812 -0.3543 2.5647 6 6 2.4189 -1.2556 3.3437 7 8 3.0482 -2.1373 2.5560 8 6 2.8205 -1.8250 1.2633 9 6 3.3336 -2.5524 0.0978 10 8 2.9544 -2.2557 -1.0199 11 7 4.2250 -3.5495 0.2645 12 6 4.6227 -3.9583 1.6138 13 6 4.7960 -4.2243 -0.9037 14 6 4.9710 -5.7425 -0.7184 15 7 6.2796 -5.5693 -1.3834 16 6 7.1089 -6.3924 -2.0975 17 1 7.9962 -5.9913 -2.5650 18 6 6.8094 -7.7422 -2.2206 19 7 5.6797 -8.2123 -1.7358 20 14 8.0097 -8.8913 -3.0740 21 1 8.8798 -9.5398 -2.0604 22 1 7.2551 -9.9319 -3.8175 23 1 8.8483 -8.1154 -4.0226 24 6 6.3324 -4.1533 -0.9709 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.1894 0.4827 2.9048 33 1 2.4241 -1.2615 4.4237 34 1 3.8922 -4.6638 2.0099 35 1 5.6029 -4.4337 1.5753 36 1 4.6690 -3.0820 2.2603 37 1 4.3028 -3.9500 -1.8362 38 1 5.0454 -6.0522 0.3240 39 1 4.2614 -6.3396 -1.2912 40 1 5.4702 -9.1556 -1.8222 41 1 6.7078 -3.4839 -1.7448 42 1 6.8076 -3.9951 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043620000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:56 Heat of formation + Delta-G solvation = 19.441534 kcal Electronic energy + Delta-G solvation = -23763.388885 eV Core-core repulsion = 20325.650062 eV Total energy + Delta-G solvation = -3437.738823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.70543 -41.08703 -39.27808 -37.18592 -35.88083 -34.05830 -32.70463 -30.92445 -29.48278 -28.01213 -27.98016 -26.67462 -25.74076 -23.85792 -23.43811 -21.72121 -20.57579 -20.14374 -18.87778 -18.51928 -17.71392 -17.50532 -17.02300 -16.74324 -16.02404 -15.82965 -15.57889 -15.26534 -14.81058 -14.65892 -14.21486 -14.10028 -13.91186 -13.65875 -13.50134 -13.34951 -13.23659 -13.03400 -12.87864 -12.82661 -12.58752 -12.19777 -12.15262 -12.11065 -12.01081 -11.84472 -11.58360 -10.91644 -10.88893 -10.61187 -9.81565 -9.42907 -8.98891 -7.95792 -5.30106 0.08515 1.45430 1.47402 1.47578 1.56785 1.64060 2.06324 2.15658 2.47592 3.21164 3.38050 3.56963 3.69959 3.77997 3.88473 4.16554 4.28885 4.31670 4.32437 4.39459 4.47798 4.56123 4.63016 4.67342 4.79747 4.80934 4.81535 4.86416 4.97765 5.06782 5.09258 5.14013 5.16157 5.24386 5.38891 5.42847 5.46469 5.50920 5.63505 5.84809 5.98119 6.34115 6.85732 6.96323 7.54387 8.47700 9.21814 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.003423 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.216928 B = 8177.008705 C = 8569.068626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.228 4.228 6 C 0.008 3.992 7 O -0.164 6.164 8 C -0.113 4.113 9 C 0.592 3.408 10 O -0.560 6.560 11 N -0.592 5.592 12 C 0.078 3.922 13 C 0.114 3.886 14 C 0.164 3.836 15 N -0.635 5.635 16 C -0.239 4.239 17 H 0.088 0.912 18 C -0.063 4.063 19 N -0.952 5.952 20 Si 0.983 3.017 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.266 1.266 24 C 0.116 3.884 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.181 0.819 33 H 0.255 0.745 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.251 0.749 41 H 0.055 0.945 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 18.682 13.519 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C -0.189 4.189 4 C -0.080 4.080 5 C -0.247 4.247 6 C -0.061 4.061 7 O -0.060 6.060 8 C -0.164 4.164 9 C 0.382 3.618 10 O -0.442 6.442 11 N -0.322 5.322 12 C -0.064 4.064 13 C 0.009 3.991 14 C 0.037 3.963 15 N -0.362 5.362 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.010 4.010 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.198 0.802 33 H 0.271 0.729 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.621 18.268 12.867 23.950 hybrid contribution 0.523 -1.102 -0.552 1.339 sum -8.098 17.166 12.315 22.626 Atomic orbital electron populations 1.21713 0.92833 1.01328 1.02984 1.20012 0.96989 0.96507 0.94282 1.21727 1.00337 0.93816 1.03015 1.20869 0.95869 0.93759 0.97515 1.21947 1.07467 1.04638 0.90625 1.25401 0.93630 0.88390 0.98685 1.84286 1.58512 1.47991 1.15179 1.21443 1.10242 1.02195 0.82532 1.17119 0.78578 0.79389 0.86696 1.90755 1.60698 1.67833 1.24867 1.47912 1.41978 1.33852 1.08475 1.22082 1.01343 1.01927 0.81031 1.23462 0.93777 0.93105 0.88765 1.22484 0.87156 0.91170 0.95446 1.45979 1.21486 1.08230 1.60475 1.19409 1.03466 0.89444 1.24376 0.89455 1.25696 0.99445 0.98186 1.02343 1.70025 1.24419 1.13526 1.51992 0.84999 0.77874 0.78301 0.77782 1.21128 1.22087 1.19093 1.23064 0.93400 0.86083 0.98404 0.94257 0.90763 0.91389 0.90742 0.93956 0.91397 0.90776 0.80212 0.72923 0.91828 0.90528 0.88274 0.88267 0.94435 0.94366 0.94056 0.92670 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.09 71.98 0.65 -1.88 16 2 C -0.06 -1.41 3.19 -11.54 -0.04 -1.45 16 3 C -0.13 -2.44 9.09 71.98 0.65 -1.78 16 4 C -0.08 -1.85 4.87 -19.74 -0.10 -1.95 16 5 C -0.23 -3.62 10.41 22.07 0.23 -3.39 16 6 C 0.01 0.11 12.08 67.10 0.81 0.92 16 7 O -0.16 -3.59 7.30 -5.09 -0.04 -3.62 16 8 C -0.11 -3.20 6.76 24.07 0.16 -3.04 16 9 C 0.59 21.11 7.64 86.44 0.66 21.77 16 10 O -0.56 -23.18 13.92 -4.34 -0.06 -23.24 16 11 N -0.59 -20.83 3.09 -833.10 -2.58 -23.41 16 12 C 0.08 2.18 8.33 127.77 1.06 3.25 16 13 C 0.11 4.76 4.41 46.75 0.21 4.97 16 14 C 0.16 8.06 6.87 86.44 0.59 8.66 16 15 N -0.63 -33.48 3.70 -716.74 -2.65 -36.14 16 16 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 18 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 19 N -0.95 -58.03 11.48 21.65 0.25 -57.78 16 20 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.12 4.92 8.43 86.49 0.73 5.64 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 2.34 5.52 -2.39 -0.01 2.33 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.04 8.05 -2.39 -0.02 1.02 16 32 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 2.24 6.13 -2.39 -0.01 2.22 16 36 H 0.10 2.33 5.41 -2.39 -0.01 2.32 16 37 H 0.10 4.55 7.20 -2.39 -0.02 4.53 16 38 H 0.04 1.81 6.69 -2.39 -0.02 1.80 16 39 H 0.04 2.14 7.31 -2.39 -0.02 2.13 16 40 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.24 6.93 -2.39 -0.02 2.22 16 Total: -1.00 -73.19 340.15 4.96 -68.23 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.02 Total: 12.13 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 7.00 Total: 15.80 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.98 Total: -117.32 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.10 Total: -26.87 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -73.19 4.96 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043620000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.667 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds