Wall clock time and date at job start Tue Mar 31 2020 06:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.33652 * 125.80583 * 270.00525 * 4 3 2 6 6 C 1.34217 * 110.91097 * 179.97438 * 5 4 3 7 7 C 1.34177 * 109.12569 * 359.74275 * 6 5 4 8 8 C 1.36424 * 125.79952 * 89.99832 * 4 3 2 9 9 C 1.47376 * 127.19335 * 359.96236 * 8 4 3 10 10 O 1.21617 * 119.99790 * 35.40088 * 9 8 4 11 11 N 1.34776 * 120.00480 * 215.40121 * 9 8 4 12 12 C 1.46501 * 119.99419 * 355.57550 * 11 9 8 13 13 C 1.46490 * 120.00029 * 175.57695 * 11 9 8 14 14 C 1.53950 * 113.83776 * 141.35494 * 13 11 9 15 15 N 1.47576 * 86.12028 * 90.75067 * 14 13 11 16 16 C 1.36937 * 134.49342 * 204.64647 * 15 14 13 17 17 H 1.07998 * 120.00050 * 174.93313 * 16 15 14 18 18 C 1.38814 * 120.00148 * 354.92912 * 16 15 14 19 19 N 1.31621 * 119.99488 * 5.00366 * 18 16 15 20 20 Si 1.86798 * 120.00219 * 185.00500 * 18 16 15 21 21 H 1.48493 * 109.47122 * 94.99987 * 20 18 16 22 22 H 1.48503 * 109.46735 * 215.00041 * 20 18 16 23 23 H 1.48498 * 109.47079 * 334.99886 * 20 18 16 24 24 C 1.47578 * 91.01585 * 24.63716 * 15 14 13 25 25 H 1.08999 * 109.46635 * 59.99914 * 1 2 3 26 26 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46815 * 300.00462 * 1 2 3 28 28 H 1.08998 * 109.47185 * 239.99191 * 2 1 3 29 29 H 1.09007 * 109.47164 * 119.99805 * 2 1 3 30 30 H 1.09002 * 109.47189 * 60.00058 * 3 2 1 31 31 H 1.08999 * 109.47309 * 299.99672 * 3 2 1 32 32 H 1.08001 * 125.43545 * 179.97438 * 6 5 4 33 33 H 1.07992 * 127.02743 * 180.26716 * 7 6 5 34 34 H 1.09004 * 109.47198 * 275.23798 * 12 11 9 35 35 H 1.08998 * 109.47436 * 35.24181 * 12 11 9 36 36 H 1.09003 * 109.47014 * 155.23784 * 12 11 9 37 37 H 1.09000 * 112.94899 * 9.66464 * 13 11 9 38 38 H 1.09004 * 113.76818 * 205.05374 * 14 13 11 39 39 H 1.09001 * 113.77039 * 336.44758 * 14 13 11 40 40 H 0.97000 * 119.99819 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.77442 * 221.05812 * 24 15 14 42 42 H 1.09004 * 113.76368 * 89.66446 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.3285 1.4425 1.0849 6 6 5.6257 1.4419 0.7404 7 6 5.7253 1.4357 -0.5976 8 6 4.3455 1.4422 -1.1055 9 6 3.9151 1.4412 -2.5150 10 8 2.9161 2.0506 -2.8461 11 7 4.6284 0.7649 -3.4371 12 6 5.8836 0.1117 -3.0574 13 6 4.1487 0.6831 -4.8188 14 6 5.2669 0.7810 -5.8724 15 7 5.3393 -0.6905 -5.7864 16 6 6.3128 -1.6198 -6.0390 17 1 6.1360 -2.6615 -5.8154 18 6 7.5269 -1.2230 -6.5826 19 7 7.7802 0.0559 -6.7636 20 14 8.8010 -2.5039 -7.0571 21 1 8.6645 -2.8271 -8.5000 22 1 10.1616 -1.9690 -6.7962 23 1 8.5900 -3.7339 -6.2522 24 6 3.9413 -0.7582 -5.3185 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.4568 1.4422 1.4302 33 1 6.6333 1.4297 -1.1822 34 1 6.6981 0.8346 -3.1043 35 1 5.7992 -0.2753 -2.0420 36 1 6.0874 -0.7103 -3.7437 37 1 3.3024 1.3415 -5.0145 38 1 4.9271 1.1483 -6.8409 39 1 6.1640 1.2867 -5.5153 40 1 8.6288 0.3332 -7.1431 41 1 3.7800 -1.4814 -4.5192 42 1 3.2121 -0.8431 -6.1243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044184631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:55 Heat of formation + Delta-G solvation = 38.478067 kcal Electronic energy + Delta-G solvation = -24083.476019 eV Core-core repulsion = 20646.562681 eV Total energy + Delta-G solvation = -3436.913337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -42.51951 -39.55014 -37.52620 -35.28515 -34.12920 -32.65636 -31.84046 -30.33183 -27.96544 -26.65798 -25.97210 -24.79416 -23.95096 -22.27039 -21.88600 -21.11430 -19.24205 -18.31990 -17.31605 -16.70256 -16.33594 -15.89042 -15.53566 -15.10870 -14.91291 -14.61056 -14.32838 -13.74283 -13.68990 -13.28472 -13.11173 -12.77812 -12.62429 -12.39861 -12.25750 -12.05968 -11.47465 -11.40756 -11.34391 -11.32735 -11.26203 -10.89709 -10.79731 -10.60045 -10.16232 -9.79890 -9.68653 -9.56752 -9.46355 -8.82324 -8.53428 -7.95280 -6.89557 -5.83626 -3.16021 1.54212 2.19192 2.84747 3.34298 3.36516 3.40873 3.42466 3.61416 4.40762 4.49055 4.84894 4.88969 4.90504 5.05187 5.13486 5.20345 5.36348 5.43603 5.55946 5.59637 5.61186 5.71250 5.75355 5.87432 5.90208 6.06404 6.10893 6.14081 6.19599 6.19668 6.28131 6.39384 6.46624 6.55311 6.76642 6.98827 7.09021 7.18004 7.33184 7.53736 7.90371 8.01250 8.61365 8.98429 9.64471 10.53964 11.32820 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.004287 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.789719 B = 6530.366263 C = 7078.190705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.049 4.049 4 C 0.061 3.939 5 O -0.178 6.178 6 C -0.048 4.048 7 C -0.182 4.182 8 C -0.225 4.225 9 C 0.584 3.416 10 O -0.555 6.555 11 N -0.568 5.568 12 C 0.070 3.930 13 C 0.087 3.913 14 C 0.155 3.845 15 N -0.608 5.608 16 C -0.228 4.228 17 H 0.080 0.920 18 C -0.002 4.002 19 N -0.915 5.915 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.105 3.895 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.206 0.794 33 H 0.161 0.839 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.045 0.955 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 2.062 15.297 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.086 4.086 4 C 0.009 3.991 5 O -0.075 6.075 6 C -0.114 4.114 7 C -0.201 4.201 8 C -0.229 4.229 9 C 0.373 3.627 10 O -0.435 6.435 11 N -0.297 5.297 12 C -0.072 4.072 13 C -0.017 4.017 14 C 0.029 3.971 15 N -0.335 5.335 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.200 4.200 19 N -0.562 5.562 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.021 4.021 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.222 0.778 33 H 0.179 0.821 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.195 2.248 15.291 17.493 hybrid contribution 1.281 -0.728 -0.676 1.621 sum -6.913 1.520 14.614 16.238 Atomic orbital electron populations 1.21742 0.94954 1.01950 1.02092 1.21502 0.96338 0.95161 1.02661 1.20458 0.83889 0.98998 1.05250 1.22635 0.93563 0.99838 0.83101 1.83718 1.17089 1.71720 1.34970 1.23822 0.83476 1.07714 0.96390 1.23138 0.97080 1.05588 0.94271 1.21196 0.93397 1.14248 0.94063 1.17291 0.82856 0.78727 0.83792 1.90702 1.27108 1.44533 1.81198 1.47224 1.23168 1.50774 1.08520 1.22223 0.84066 0.99835 1.01123 1.22947 0.99022 0.98265 0.81514 1.22585 0.95023 0.86167 0.93282 1.46143 1.06337 1.02711 1.78302 1.18995 0.91929 0.88762 1.35798 0.90239 1.24788 0.98043 0.96166 1.00979 1.69836 1.23951 1.13179 1.49205 0.86188 0.80982 0.80574 0.78557 1.21665 1.21723 1.20561 1.23028 0.88683 0.94394 0.96036 0.92163 0.92424 0.92678 0.91390 0.91824 0.90001 0.86873 0.77774 0.82145 0.93288 0.92564 0.86511 0.88695 0.94342 0.90562 0.93578 0.93646 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 3 C -0.05 -0.58 5.55 -27.89 -0.15 -0.74 16 4 C 0.06 0.85 6.62 -34.96 -0.23 0.62 16 5 O -0.18 -2.28 10.52 7.65 0.08 -2.20 16 6 C -0.05 -0.54 12.03 29.30 0.35 -0.19 16 7 C -0.18 -2.44 8.77 -37.45 -0.33 -2.77 16 8 C -0.22 -3.57 5.54 -103.27 -0.57 -4.14 16 9 C 0.58 10.85 7.49 -12.54 -0.09 10.76 16 10 O -0.55 -11.29 14.94 5.26 0.08 -11.21 16 11 N -0.57 -10.82 3.09 -177.02 -0.55 -11.37 16 12 C 0.07 1.29 8.09 59.85 0.48 1.77 16 13 C 0.09 1.75 4.53 -70.14 -0.32 1.44 16 14 C 0.16 3.60 6.71 -2.98 -0.02 3.59 16 15 N -0.61 -14.77 2.26 -178.06 -0.40 -15.17 16 16 C -0.23 -6.02 9.68 -15.06 -0.15 -6.17 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 19 N -0.92 -25.93 11.47 55.49 0.64 -25.29 16 20 Si 0.91 21.31 29.56 -169.99 -5.02 16.29 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.11 2.16 8.38 -2.97 -0.02 2.14 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.11 1.53 6.57 -51.93 -0.34 1.19 16 32 H 0.21 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.16 2.04 6.40 -52.49 -0.34 1.71 16 34 H 0.05 0.90 7.37 -51.93 -0.38 0.51 16 35 H 0.06 0.90 5.80 -51.93 -0.30 0.60 16 36 H 0.12 2.52 5.11 -51.93 -0.27 2.25 16 37 H 0.10 1.87 7.20 -51.93 -0.37 1.49 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.94 7.03 -51.93 -0.36 1.57 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -30.68 340.86 -7.12 -37.80 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.14 Total: 2.30 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.94 Total: 3.72 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.31 Total: -51.83 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.16 Total: -13.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.68 -7.12 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044184631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.281 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds