Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.33652 * 125.80583 * 270.00525 * 4 3 2 6 6 C 1.34217 * 110.91097 * 179.97438 * 5 4 3 7 7 C 1.34177 * 109.12569 * 359.74275 * 6 5 4 8 8 C 1.36424 * 125.79952 * 89.99832 * 4 3 2 9 9 C 1.47376 * 127.19335 * 359.96236 * 8 4 3 10 10 O 1.21617 * 119.99790 * 35.40088 * 9 8 4 11 11 N 1.34776 * 120.00480 * 215.40121 * 9 8 4 12 12 C 1.46501 * 119.99419 * 355.57550 * 11 9 8 13 13 C 1.46490 * 120.00029 * 175.57695 * 11 9 8 14 14 C 1.53950 * 113.83776 * 141.35494 * 13 11 9 15 15 N 1.47576 * 86.12028 * 90.75067 * 14 13 11 16 16 C 1.36937 * 134.49342 * 204.64647 * 15 14 13 17 17 H 1.07998 * 120.00050 * 174.93313 * 16 15 14 18 18 C 1.38814 * 120.00148 * 354.92912 * 16 15 14 19 19 N 1.31621 * 119.99488 * 5.00366 * 18 16 15 20 20 Si 1.86798 * 120.00219 * 185.00500 * 18 16 15 21 21 H 1.48493 * 109.47122 * 94.99987 * 20 18 16 22 22 H 1.48503 * 109.46735 * 215.00041 * 20 18 16 23 23 H 1.48498 * 109.47079 * 334.99886 * 20 18 16 24 24 C 1.47578 * 91.01585 * 24.63716 * 15 14 13 25 25 H 1.08999 * 109.46635 * 59.99914 * 1 2 3 26 26 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46815 * 300.00462 * 1 2 3 28 28 H 1.08998 * 109.47185 * 239.99191 * 2 1 3 29 29 H 1.09007 * 109.47164 * 119.99805 * 2 1 3 30 30 H 1.09002 * 109.47189 * 60.00058 * 3 2 1 31 31 H 1.08999 * 109.47309 * 299.99672 * 3 2 1 32 32 H 1.08001 * 125.43545 * 179.97438 * 6 5 4 33 33 H 1.07992 * 127.02743 * 180.26716 * 7 6 5 34 34 H 1.09004 * 109.47198 * 275.23798 * 12 11 9 35 35 H 1.08998 * 109.47436 * 35.24181 * 12 11 9 36 36 H 1.09003 * 109.47014 * 155.23784 * 12 11 9 37 37 H 1.09000 * 112.94899 * 9.66464 * 13 11 9 38 38 H 1.09004 * 113.76818 * 205.05374 * 14 13 11 39 39 H 1.09001 * 113.77039 * 336.44758 * 14 13 11 40 40 H 0.97000 * 119.99819 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.77442 * 221.05812 * 24 15 14 42 42 H 1.09004 * 113.76368 * 89.66446 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.3285 1.4425 1.0849 6 6 5.6257 1.4419 0.7404 7 6 5.7253 1.4357 -0.5976 8 6 4.3455 1.4422 -1.1055 9 6 3.9151 1.4412 -2.5150 10 8 2.9161 2.0506 -2.8461 11 7 4.6284 0.7649 -3.4371 12 6 5.8836 0.1117 -3.0574 13 6 4.1487 0.6831 -4.8188 14 6 5.2669 0.7810 -5.8724 15 7 5.3393 -0.6905 -5.7864 16 6 6.3128 -1.6198 -6.0390 17 1 6.1360 -2.6615 -5.8154 18 6 7.5269 -1.2230 -6.5826 19 7 7.7802 0.0559 -6.7636 20 14 8.8010 -2.5039 -7.0571 21 1 8.6645 -2.8271 -8.5000 22 1 10.1616 -1.9690 -6.7962 23 1 8.5900 -3.7339 -6.2522 24 6 3.9413 -0.7582 -5.3185 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 6.4568 1.4422 1.4302 33 1 6.6333 1.4297 -1.1822 34 1 6.6981 0.8346 -3.1043 35 1 5.7992 -0.2753 -2.0420 36 1 6.0874 -0.7103 -3.7437 37 1 3.3024 1.3415 -5.0145 38 1 4.9271 1.1483 -6.8409 39 1 6.1640 1.2867 -5.5153 40 1 8.6288 0.3332 -7.1431 41 1 3.7800 -1.4814 -4.5192 42 1 3.2121 -0.8431 -6.1243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044184631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = 21.415810 kcal Electronic energy + Delta-G solvation = -24084.215894 eV Core-core repulsion = 20646.562681 eV Total energy + Delta-G solvation = -3437.653212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.55575 -41.13164 -39.17234 -36.19953 -35.67082 -34.24754 -33.37898 -31.26082 -29.83542 -27.86454 -27.34437 -26.58987 -25.48344 -23.80651 -22.77445 -22.28312 -20.63518 -19.73699 -18.85585 -18.35248 -17.62241 -17.10619 -16.95711 -16.60640 -16.27878 -15.94033 -15.68387 -15.39510 -14.98204 -14.55876 -14.36517 -14.17951 -13.89107 -13.86893 -13.62834 -13.21454 -13.04099 -12.94321 -12.84866 -12.69283 -12.40780 -12.36541 -12.19501 -12.01658 -11.67024 -11.62347 -11.48638 -11.12627 -10.81747 -10.64071 -9.66571 -9.43604 -8.86732 -7.88953 -5.22205 0.40900 1.16263 1.47675 1.49680 1.57661 1.80369 2.00699 2.20491 2.47986 3.25742 3.41702 3.56255 3.63576 3.85030 3.96078 4.03717 4.10340 4.33186 4.39559 4.41903 4.44916 4.55824 4.68676 4.74313 4.76555 4.77028 4.82508 4.88241 4.92519 5.01304 5.08088 5.23011 5.23164 5.23867 5.30758 5.39523 5.40199 5.48446 5.71586 5.90588 6.08458 6.50429 6.92349 7.13128 7.61614 8.55963 9.27399 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.004287 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.789719 B = 6530.366263 C = 7078.190705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.049 4.049 4 C 0.067 3.933 5 O -0.175 6.175 6 C -0.022 4.022 7 C -0.206 4.206 8 C -0.259 4.259 9 C 0.585 3.415 10 O -0.578 6.578 11 N -0.574 5.574 12 C 0.086 3.914 13 C 0.105 3.895 14 C 0.157 3.843 15 N -0.625 5.625 16 C -0.230 4.230 17 H 0.084 0.916 18 C -0.055 4.055 19 N -0.947 5.947 20 Si 0.970 3.030 21 H -0.294 1.294 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.113 3.887 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.162 0.838 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.030 0.970 39 H 0.048 0.952 40 H 0.248 0.752 41 H 0.053 0.947 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 1.250 17.695 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.086 4.086 4 C 0.014 3.986 5 O -0.071 6.071 6 C -0.087 4.087 7 C -0.225 4.225 8 C -0.264 4.264 9 C 0.376 3.624 10 O -0.460 6.460 11 N -0.303 5.303 12 C -0.056 4.056 13 C -0.001 4.001 14 C 0.031 3.969 15 N -0.352 5.352 16 C -0.358 4.358 17 H 0.102 0.898 18 C -0.249 4.249 19 N -0.595 5.595 20 Si 0.799 3.201 21 H -0.221 1.221 22 H -0.222 1.222 23 H -0.191 1.191 24 C -0.013 4.013 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.268 0.732 33 H 0.180 0.820 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.598 1.418 17.713 19.740 hybrid contribution 1.354 -0.442 -1.343 1.958 sum -7.243 0.976 16.370 17.927 Atomic orbital electron populations 1.21728 0.93508 1.02644 1.02549 1.21462 0.97568 0.94201 1.01964 1.20515 0.82803 0.99760 1.05514 1.22908 0.94374 0.98431 0.82873 1.83765 1.17754 1.71268 1.34291 1.24641 0.83611 1.04210 0.96251 1.23213 0.96097 1.07698 0.95476 1.21140 0.95317 1.17069 0.92846 1.17674 0.82224 0.77739 0.84811 1.90678 1.28110 1.45385 1.81870 1.47274 1.23577 1.51276 1.08182 1.22029 0.83654 0.98459 1.01506 1.22668 0.97671 0.98107 0.81618 1.22449 0.94944 0.85677 0.93854 1.46308 1.07745 1.02856 1.78284 1.19297 0.92524 0.89292 1.34674 0.89849 1.25495 0.99968 0.97776 1.01644 1.70009 1.24104 1.14862 1.50523 0.85184 0.78287 0.78802 0.77803 1.22111 1.22213 1.19096 1.23108 0.87085 0.94702 0.96444 0.93036 0.91633 0.90900 0.93809 0.90707 0.87404 0.88855 0.73201 0.82003 0.93877 0.90147 0.89543 0.88090 0.95222 0.93319 0.94302 0.92844 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.66 16 2 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 3 C -0.05 -1.09 5.55 29.85 0.17 -0.92 16 4 C 0.07 1.76 6.62 25.26 0.17 1.93 16 5 O -0.17 -3.92 10.52 4.46 0.05 -3.88 16 6 C -0.02 -0.42 12.03 66.89 0.80 0.39 16 7 C -0.21 -5.19 8.77 23.65 0.21 -4.98 16 8 C -0.26 -8.02 5.54 -18.99 -0.11 -8.13 16 9 C 0.58 21.80 7.49 86.65 0.65 22.45 16 10 O -0.58 -23.80 14.94 -4.09 -0.06 -23.86 16 11 N -0.57 -22.09 3.09 -832.23 -2.57 -24.66 16 12 C 0.09 3.19 8.09 127.77 1.03 4.22 16 13 C 0.10 4.25 4.53 46.75 0.21 4.46 16 14 C 0.16 7.50 6.71 86.48 0.58 8.08 16 15 N -0.62 -30.71 2.26 -717.27 -1.62 -32.33 16 16 C -0.23 -12.23 9.68 84.03 0.81 -11.41 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 19 N -0.95 -54.97 11.47 21.65 0.25 -54.72 16 20 Si 0.97 44.14 29.56 68.60 2.03 46.17 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 C 0.11 4.58 8.38 86.48 0.72 5.31 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.49 6.57 -2.39 -0.02 2.48 16 32 H 0.25 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.16 3.96 6.40 -2.91 -0.02 3.94 16 34 H 0.04 1.62 7.37 -2.39 -0.02 1.60 16 35 H 0.08 2.55 5.80 -2.39 -0.01 2.53 16 36 H 0.09 3.78 5.11 -2.39 -0.01 3.77 16 37 H 0.10 4.00 7.20 -2.39 -0.02 3.98 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 2.58 7.03 -2.39 -0.02 2.57 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -66.88 340.86 5.70 -61.18 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.02 Total: 17.02 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.61 Total: 15.08 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -3.95 Total: -111.71 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.01 Total: -27.74 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -66.88 5.70 -61.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044184631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.599 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds