Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46888 * 2 1 4 4 C 1.40368 * 126.64375 * 265.15506 * 3 2 1 5 5 C 1.35128 * 107.11508 * 180.22512 * 4 3 2 6 6 O 1.33929 * 108.76888 * 359.78219 * 5 4 3 7 7 C 1.34918 * 109.38202 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98791 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00272 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99858 * 0.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.64448 * 36.68786 * 11 10 8 13 13 C 1.54329 * 110.71914 * 273.54393 * 11 10 8 14 14 N 1.47030 * 107.26954 * 219.44355 * 13 11 10 15 15 C 1.36940 * 125.64273 * 178.97391 * 14 13 11 16 16 H 1.08002 * 119.99510 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00235 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47378 * 59.99462 * 19 17 15 21 21 H 1.48498 * 109.46962 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46973 * 299.99710 * 19 17 15 23 23 C 1.47414 * 108.70311 * 358.94679 * 14 13 11 24 24 C 1.54908 * 104.83563 * 24.12574 * 23 14 13 25 25 H 1.08999 * 111.00626 * 81.06696 * 24 23 14 26 26 C 1.53007 * 111.00365 * 204.91956 * 24 23 14 27 27 H 1.09001 * 109.46853 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.47076 * 59.99899 * 1 2 3 29 29 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47221 * 240.00285 * 2 1 3 31 31 H 1.08998 * 109.47420 * 119.99438 * 2 1 3 32 32 H 1.07996 * 126.44545 * 359.97438 * 4 3 2 33 33 H 1.08001 * 125.62072 * 179.77455 * 5 4 3 34 34 H 0.96995 * 120.00015 * 359.72606 * 10 8 7 35 35 H 1.08995 * 109.88248 * 338.86477 * 13 11 10 36 36 H 1.09004 * 109.88263 * 99.87766 * 13 11 10 37 37 H 0.96998 * 119.99917 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.36969 * 142.96834 * 23 14 13 39 39 H 1.09009 * 110.36845 * 265.17246 * 23 14 13 40 40 H 1.08998 * 109.47146 * 172.19611 * 26 24 23 41 41 H 1.08996 * 109.46750 * 292.19253 * 26 24 23 42 42 H 1.09000 * 109.47316 * 52.19333 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4012 2.1790 -1.1222 5 6 2.7945 3.3908 -0.6717 6 8 2.6803 3.4123 0.6625 7 6 2.2135 2.2213 1.0912 8 6 1.9530 1.8491 2.4857 9 8 1.5307 0.7389 2.7505 10 7 2.1814 2.7366 3.4740 11 6 1.9217 2.3646 4.8669 12 1 2.1815 1.3205 5.0406 13 6 0.4470 2.6293 5.2369 14 7 0.4299 3.1654 6.6059 15 6 -0.6873 3.5486 7.2989 16 1 -0.5940 3.9313 8.3045 17 6 -1.9396 3.4451 6.7090 18 7 -2.0532 2.9792 5.4832 19 14 -3.4635 3.9672 7.6547 20 1 -3.3544 5.4035 8.0155 21 1 -4.6664 3.7585 6.8093 22 1 -3.5813 3.1537 8.8916 23 6 1.8144 3.2215 7.1089 24 6 2.6958 3.2957 5.8372 25 1 2.7389 4.3139 5.4506 26 6 4.1008 2.7556 6.1114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.3791 1.8536 -2.1518 33 1 3.1435 4.2074 -1.2863 34 1 2.5218 3.6201 3.2633 35 1 0.0169 3.3567 4.5485 36 1 -0.1188 1.6986 5.1938 37 1 -2.9282 2.9072 5.0709 38 1 1.9592 4.1102 7.7232 39 1 2.0467 2.3235 7.6817 40 1 4.6540 2.6897 5.1745 41 1 4.6213 3.4272 6.7941 42 1 4.0281 1.7653 6.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080394521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = -3.839429 kcal Electronic energy + Delta-G solvation = -23939.791451 eV Core-core repulsion = 20501.043089 eV Total energy + Delta-G solvation = -3438.748362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.68324 -39.35460 -37.48500 -35.03021 -33.80359 -32.60982 -31.32415 -30.35843 -29.59882 -27.59577 -25.62620 -24.34282 -23.46033 -22.49549 -21.19021 -20.28309 -19.85584 -19.30974 -17.84410 -16.87947 -16.28139 -16.00161 -15.81505 -14.94883 -14.42384 -14.14563 -14.09470 -13.67695 -13.60431 -13.25431 -13.03672 -12.79531 -12.67420 -12.53040 -12.28925 -11.97060 -11.68730 -11.32850 -11.21951 -11.00925 -10.86442 -10.74227 -10.57160 -10.41022 -9.97259 -9.93171 -9.79683 -9.72102 -9.63547 -8.72565 -8.57978 -8.38447 -6.81214 -5.66355 -3.01851 1.16689 2.34714 2.77871 3.42733 3.43698 3.47196 3.48942 3.55262 4.52578 4.67147 4.74301 4.93558 5.10577 5.32211 5.33447 5.43693 5.45005 5.56780 5.57517 5.66906 5.75210 5.77409 5.93665 5.99109 6.01390 6.09275 6.15809 6.19478 6.28655 6.35264 6.41048 6.49287 6.51230 6.63649 6.74162 6.86275 6.96097 7.57937 7.60587 7.85558 7.89686 8.28207 8.46067 9.24162 9.84977 10.49827 11.44233 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.004650 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.037611 B = 6019.635925 C = 7003.149295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.091 4.091 4 C -0.223 4.223 5 C -0.014 4.014 6 O -0.164 6.164 7 C -0.071 4.071 8 C 0.599 3.401 9 O -0.512 6.512 10 N -0.701 5.701 11 C 0.120 3.880 12 H 0.089 0.911 13 C 0.174 3.826 14 N -0.606 5.606 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.141 3.859 24 C -0.114 4.114 25 H 0.078 0.922 26 C -0.138 4.138 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.153 0.847 33 H 0.207 0.793 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.253 0.747 38 H 0.042 0.958 39 H 0.023 0.977 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.675 -0.410 -12.138 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.094 4.094 4 C -0.242 4.242 5 C -0.084 4.084 6 O -0.059 6.059 7 C -0.123 4.123 8 C 0.384 3.616 9 O -0.389 6.389 10 N -0.351 5.351 11 C 0.016 3.984 12 H 0.107 0.893 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.015 3.985 24 C -0.134 4.134 25 H 0.096 0.904 26 C -0.195 4.195 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.234 0.766 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.176 -0.970 -11.738 16.941 hybrid contribution -0.728 0.813 -0.033 1.092 sum 11.448 -0.157 -11.771 16.420 Atomic orbital electron populations 1.21649 0.94234 1.01793 1.02202 1.20109 0.96508 0.90093 1.03050 1.20617 0.99939 0.97849 0.91011 1.21696 1.07829 0.94615 1.00041 1.24267 1.03182 0.99961 0.80968 1.84066 1.64900 1.33993 1.22938 1.22129 1.09809 0.84985 0.95367 1.16497 0.78426 0.85051 0.81588 1.90864 1.45481 1.20774 1.81813 1.45852 1.65833 1.16499 1.06887 1.22567 0.99124 0.98802 0.77928 0.89268 1.21476 0.88240 0.99099 0.86386 1.44398 1.00577 1.75412 1.12880 1.19004 0.83810 1.36255 0.96973 0.90363 1.24826 0.97539 1.01325 0.96640 1.69961 1.22657 1.50938 1.13003 0.86204 0.82577 0.78263 0.78725 1.21195 1.21619 1.21133 1.21584 0.85336 0.98423 0.93170 1.22621 0.94344 0.98861 0.97537 0.90377 1.21705 0.95821 1.01058 1.00958 0.91661 0.93318 0.92379 0.91492 0.89243 0.82968 0.77649 0.76619 0.93149 0.93242 0.93664 0.93967 0.95976 0.93107 0.92719 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 37.16 0.37 -1.57 16 2 C -0.06 -0.80 5.72 -27.88 -0.16 -0.96 16 3 C -0.09 -1.28 5.45 -104.43 -0.57 -1.85 16 4 C -0.22 -2.44 10.83 -39.89 -0.43 -2.87 16 5 C -0.01 -0.14 12.08 29.63 0.36 0.22 16 6 O -0.16 -2.19 10.40 4.99 0.05 -2.14 16 7 C -0.07 -1.10 7.13 -36.80 -0.26 -1.37 16 8 C 0.60 10.85 7.78 -12.86 -0.10 10.75 16 9 O -0.51 -10.64 14.35 5.20 0.07 -10.57 16 10 N -0.70 -12.07 5.13 -53.34 -0.27 -12.34 16 11 C 0.12 2.34 2.70 -66.10 -0.18 2.16 16 12 H 0.09 1.80 7.59 -51.93 -0.39 1.41 16 13 C 0.17 4.37 5.12 -3.06 -0.02 4.36 16 14 N -0.61 -15.70 3.39 -170.06 -0.58 -16.28 16 15 C -0.23 -6.57 10.28 -15.06 -0.15 -6.72 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -27.81 10.31 55.49 0.57 -27.24 16 19 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.14 2.89 6.70 -2.54 -0.02 2.88 16 24 C -0.11 -1.92 3.25 -88.47 -0.29 -2.21 16 25 H 0.08 1.28 8.00 -51.93 -0.42 0.86 16 26 C -0.14 -1.85 9.31 37.16 0.35 -1.50 16 27 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.34 6.73 -51.93 -0.35 0.99 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.40 5.97 8.27 -40.82 -0.34 5.63 16 35 H 0.05 1.41 7.27 -51.93 -0.38 1.03 16 36 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.45 7.99 -51.92 -0.41 0.04 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -33.08 346.64 -7.59 -40.67 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.44 Total: 4.20 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.20 Total: 1.02 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.28 Total: -55.86 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.13 Total: -12.70 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.08 -7.59 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080394521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.828 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds