Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46888 * 2 1 4 4 C 1.40368 * 126.64375 * 265.15506 * 3 2 1 5 5 C 1.35128 * 107.11508 * 180.22512 * 4 3 2 6 6 O 1.33929 * 108.76888 * 359.78219 * 5 4 3 7 7 C 1.34918 * 109.38202 * 359.97438 * 6 5 4 8 8 C 1.46660 * 125.98791 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00272 * 180.02562 * 8 7 6 10 10 N 1.34784 * 119.99858 * 0.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.64448 * 36.68786 * 11 10 8 13 13 C 1.54329 * 110.71914 * 273.54393 * 11 10 8 14 14 N 1.47030 * 107.26954 * 219.44355 * 13 11 10 15 15 C 1.36940 * 125.64273 * 178.97391 * 14 13 11 16 16 H 1.08002 * 119.99510 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00235 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00101 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47378 * 59.99462 * 19 17 15 21 21 H 1.48498 * 109.46962 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46973 * 299.99710 * 19 17 15 23 23 C 1.47414 * 108.70311 * 358.94679 * 14 13 11 24 24 C 1.54908 * 104.83563 * 24.12574 * 23 14 13 25 25 H 1.08999 * 111.00626 * 81.06696 * 24 23 14 26 26 C 1.53007 * 111.00365 * 204.91956 * 24 23 14 27 27 H 1.09001 * 109.46853 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.47076 * 59.99899 * 1 2 3 29 29 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47221 * 240.00285 * 2 1 3 31 31 H 1.08998 * 109.47420 * 119.99438 * 2 1 3 32 32 H 1.07996 * 126.44545 * 359.97438 * 4 3 2 33 33 H 1.08001 * 125.62072 * 179.77455 * 5 4 3 34 34 H 0.96995 * 120.00015 * 359.72606 * 10 8 7 35 35 H 1.08995 * 109.88248 * 338.86477 * 13 11 10 36 36 H 1.09004 * 109.88263 * 99.87766 * 13 11 10 37 37 H 0.96998 * 119.99917 * 180.02562 * 18 17 15 38 38 H 1.09004 * 110.36969 * 142.96834 * 23 14 13 39 39 H 1.09009 * 110.36845 * 265.17246 * 23 14 13 40 40 H 1.08998 * 109.47146 * 172.19611 * 26 24 23 41 41 H 1.08996 * 109.46750 * 292.19253 * 26 24 23 42 42 H 1.09000 * 109.47316 * 52.19333 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4012 2.1790 -1.1222 5 6 2.7945 3.3908 -0.6717 6 8 2.6803 3.4123 0.6625 7 6 2.2135 2.2213 1.0912 8 6 1.9530 1.8491 2.4857 9 8 1.5307 0.7389 2.7505 10 7 2.1814 2.7366 3.4740 11 6 1.9217 2.3646 4.8669 12 1 2.1815 1.3205 5.0406 13 6 0.4470 2.6293 5.2369 14 7 0.4299 3.1654 6.6059 15 6 -0.6873 3.5486 7.2989 16 1 -0.5940 3.9313 8.3045 17 6 -1.9396 3.4451 6.7090 18 7 -2.0532 2.9792 5.4832 19 14 -3.4635 3.9672 7.6547 20 1 -3.3544 5.4035 8.0155 21 1 -4.6664 3.7585 6.8093 22 1 -3.5813 3.1537 8.8916 23 6 1.8144 3.2215 7.1089 24 6 2.6958 3.2957 5.8372 25 1 2.7389 4.3139 5.4506 26 6 4.1008 2.7556 6.1114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.3791 1.8536 -2.1518 33 1 3.1435 4.2074 -1.2863 34 1 2.5218 3.6201 3.2633 35 1 0.0169 3.3567 4.5485 36 1 -0.1188 1.6986 5.1938 37 1 -2.9282 2.9072 5.0709 38 1 1.9592 4.1102 7.7232 39 1 2.0467 2.3235 7.6817 40 1 4.6540 2.6897 5.1745 41 1 4.6213 3.4272 6.7941 42 1 4.0281 1.7653 6.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080394521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -26.285275 kcal Electronic energy + Delta-G solvation = -23940.764776 eV Core-core repulsion = 20501.043089 eV Total energy + Delta-G solvation = -3439.721687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.66761 -40.85290 -39.12018 -36.19226 -35.47963 -34.29466 -32.31034 -32.18300 -30.82396 -29.24869 -27.38958 -25.78034 -24.86223 -23.69130 -22.46312 -21.71878 -21.52828 -20.54826 -19.03774 -18.89732 -17.47911 -17.31498 -17.04967 -16.83217 -15.78600 -15.68989 -15.40384 -15.35920 -14.80626 -14.65393 -14.45696 -14.11283 -13.94902 -13.75214 -13.58871 -13.35758 -13.29881 -13.05669 -12.86791 -12.58833 -12.30428 -12.26507 -12.15797 -11.89328 -11.86780 -11.68627 -11.48971 -11.15055 -10.75441 -10.67951 -10.16500 -9.54159 -8.94720 -7.85687 -5.24283 0.06654 1.43100 1.44870 1.47718 1.54011 1.70980 2.12447 2.25305 2.48987 3.32451 3.52954 3.70368 3.76158 3.82730 3.92133 4.02079 4.07393 4.39131 4.43736 4.44578 4.51247 4.58135 4.61992 4.69680 4.82279 4.86692 5.01473 5.03001 5.04358 5.06408 5.12264 5.25936 5.30866 5.34476 5.42609 5.44960 5.47578 5.58493 5.74247 5.91558 6.14756 6.49760 7.03097 7.10110 7.73969 8.37982 9.23398 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.004650 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.037611 B = 6019.635925 C = 7003.149295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.091 4.091 4 C -0.231 4.231 5 C 0.012 3.988 6 O -0.172 6.172 7 C -0.114 4.114 8 C 0.594 3.406 9 O -0.553 6.553 10 N -0.695 5.695 11 C 0.137 3.863 12 H 0.079 0.921 13 C 0.190 3.810 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.090 0.910 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.982 3.018 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.275 1.275 23 C 0.133 3.867 24 C -0.094 4.094 25 H 0.089 0.911 26 C -0.129 4.129 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.412 0.588 35 H 0.013 0.987 36 H -0.007 1.007 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.840 1.105 -13.420 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.094 4.094 4 C -0.249 4.249 5 C -0.057 4.057 6 O -0.068 6.068 7 C -0.165 4.165 8 C 0.382 3.618 9 O -0.433 6.433 10 N -0.345 5.345 11 C 0.031 3.969 12 H 0.097 0.903 13 C 0.064 3.936 14 N -0.355 5.355 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.810 3.190 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.201 1.201 23 C 0.008 3.992 24 C -0.114 4.114 25 H 0.108 0.892 26 C -0.186 4.186 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.203 0.797 33 H 0.274 0.726 34 H 0.249 0.751 35 H 0.031 0.969 36 H 0.011 0.989 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.398 0.576 -12.996 19.404 hybrid contribution -1.375 0.349 0.279 1.446 sum 13.023 0.925 -12.717 18.226 Atomic orbital electron populations 1.21597 0.94812 1.02193 1.00811 1.20129 0.95944 0.90335 1.03434 1.20974 0.98554 0.97939 0.91897 1.22075 1.07838 0.94417 1.00607 1.25376 0.99751 1.00900 0.79683 1.84050 1.65016 1.32914 1.24822 1.21599 1.13869 0.86799 0.94236 1.16919 0.77429 0.84560 0.82937 1.90831 1.47197 1.22402 1.82855 1.45683 1.65778 1.17124 1.05882 1.22148 0.95639 0.99163 0.79971 0.90286 1.21073 0.91406 0.95131 0.86010 1.44727 1.02468 1.75138 1.13148 1.19508 0.84921 1.35325 0.97595 0.89219 1.25759 1.00857 1.02009 0.97625 1.70247 1.22510 1.52662 1.14855 0.85101 0.78162 0.78470 0.77304 1.19698 1.22417 1.20128 1.21860 0.83138 0.99150 0.95026 1.22551 0.95497 0.98929 0.94415 0.89228 1.21655 0.93221 1.01308 1.02427 0.95997 0.91535 0.91184 0.88106 0.91739 0.79670 0.72586 0.75148 0.96879 0.98921 0.94686 0.92521 0.95356 0.91576 0.90133 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.89 71.98 0.71 -3.14 16 2 C -0.06 -1.63 5.72 29.85 0.17 -1.46 16 3 C -0.09 -2.46 5.45 -19.74 -0.11 -2.57 16 4 C -0.23 -4.26 10.83 22.07 0.24 -4.02 16 5 C 0.01 0.20 12.08 67.10 0.81 1.01 16 6 O -0.17 -4.32 10.40 -5.07 -0.05 -4.37 16 7 C -0.11 -3.57 7.13 24.07 0.17 -3.40 16 8 C 0.59 22.75 7.78 86.44 0.67 23.43 16 9 O -0.55 -24.93 14.35 -4.32 -0.06 -24.99 16 10 N -0.69 -24.81 5.13 -440.89 -2.26 -27.07 16 11 C 0.14 5.51 2.70 46.18 0.12 5.64 16 12 H 0.08 3.36 7.59 -2.39 -0.02 3.35 16 13 C 0.19 10.25 5.12 86.73 0.44 10.69 16 14 N -0.63 -33.63 3.39 -691.96 -2.35 -35.98 16 15 C -0.24 -14.17 10.28 84.03 0.86 -13.30 16 16 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 17 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 18 N -0.95 -61.22 10.31 21.65 0.22 -61.00 16 19 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C 0.13 5.39 6.70 86.86 0.58 5.97 16 24 C -0.09 -3.09 3.25 -9.40 -0.03 -3.12 16 25 H 0.09 2.76 8.00 -2.39 -0.02 2.74 16 26 C -0.13 -3.10 9.31 71.98 0.67 -2.43 16 27 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.04 6.73 -2.39 -0.02 2.03 16 32 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.26 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.41 12.37 8.27 -92.71 -0.77 11.60 16 35 H 0.01 0.79 7.27 -2.39 -0.02 0.77 16 36 H -0.01 -0.48 7.51 -2.38 -0.02 -0.50 16 37 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 39 H 0.03 1.13 7.99 -2.38 -0.02 1.11 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -79.27 346.64 3.57 -75.70 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.25 Total: 18.70 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.79 Total: 9.60 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.39 Total: -124.05 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.11 Total: -29.36 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -79.27 3.57 -75.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080394521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.417 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds