Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47080 * 2 1 4 4 C 1.40363 * 126.64445 * 264.97138 * 3 2 1 5 5 C 1.35129 * 107.11897 * 180.02562 * 4 3 2 6 6 O 1.33933 * 108.76425 * 359.75416 * 5 4 3 7 7 C 1.34914 * 109.38325 * 0.40390 * 6 5 4 8 8 C 1.46661 * 125.98861 * 179.85888 * 7 6 5 9 9 O 1.21702 * 120.00137 * 174.24463 * 8 7 6 10 10 N 1.34776 * 119.99821 * 354.24925 * 8 7 6 11 11 C 1.46493 * 120.00278 * 5.10883 * 10 8 7 12 12 C 1.46505 * 119.99804 * 185.38130 * 10 8 7 13 13 C 1.52996 * 109.47082 * 275.78486 * 12 10 8 14 14 H 1.08994 * 112.96679 * 50.82566 * 13 12 10 15 15 C 1.53946 * 113.76872 * 182.50453 * 13 12 10 16 16 C 1.53938 * 86.29143 * 137.90563 * 15 13 12 17 17 N 1.47579 * 113.77004 * 279.14321 * 13 12 10 18 18 C 1.36939 * 134.48966 * 41.07239 * 17 13 12 19 19 H 1.08004 * 120.00430 * 8.93826 * 18 17 13 20 20 C 1.38811 * 119.99899 * 188.94277 * 18 17 13 21 21 N 1.31614 * 120.00378 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46996 * 89.99587 * 22 20 18 24 24 H 1.48498 * 109.47237 * 209.99682 * 22 20 18 25 25 H 1.48493 * 109.46968 * 329.99697 * 22 20 18 26 26 H 1.09003 * 109.46731 * 60.00265 * 1 2 3 27 27 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47350 * 300.00366 * 1 2 3 29 29 H 1.08997 * 109.47046 * 239.99267 * 2 1 3 30 30 H 1.09003 * 109.46731 * 119.99735 * 2 1 3 31 31 H 1.08003 * 126.44120 * 0.02562 * 4 3 2 32 32 H 1.07991 * 125.62026 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47506 * 59.70452 * 11 10 8 34 34 H 1.08993 * 109.47523 * 179.70808 * 11 10 8 35 35 H 1.09003 * 109.46828 * 299.70829 * 11 10 8 36 36 H 1.09004 * 109.46960 * 35.78527 * 12 10 8 37 37 H 1.08995 * 109.46974 * 155.78311 * 12 10 8 38 38 H 1.08997 * 113.74221 * 252.25391 * 15 13 12 39 39 H 1.09007 * 113.74034 * 23.45096 * 15 13 12 40 40 H 1.09001 * 113.77180 * 90.69867 * 16 15 13 41 41 H 1.09007 * 113.76997 * 221.98156 * 16 15 13 42 42 H 0.97001 * 120.00578 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4047 2.1777 -1.1219 5 6 2.7924 3.3915 -0.6719 6 8 2.6711 3.4155 0.6617 7 6 2.2140 2.2211 1.0913 8 6 1.9523 1.8493 2.4857 9 8 1.4412 0.7753 2.7434 10 7 2.2777 2.6972 3.4815 11 6 2.7886 4.0338 3.1680 12 6 2.1260 2.2798 4.8777 13 6 0.6818 2.5130 5.3257 14 1 -0.0503 2.0863 4.6402 15 6 0.4262 2.1632 6.8029 16 6 -0.4102 3.4543 6.8602 17 7 0.3957 3.9095 5.7078 18 6 0.7397 5.1334 5.1989 19 1 1.2357 5.2003 4.2418 20 6 0.4509 6.2881 5.9131 21 7 -0.1539 6.2067 7.0792 22 14 0.9196 7.9577 5.2186 23 1 -0.1997 8.4837 4.3966 24 1 1.1986 8.8973 6.3342 25 1 2.1323 7.8193 4.3730 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3850 1.8514 -2.1512 32 1 3.1393 4.2088 -1.2867 33 1 2.0465 4.5790 2.5847 34 1 2.9900 4.5723 4.0940 35 1 3.7096 3.9448 2.5918 36 1 2.3682 1.2209 4.9687 37 1 2.7999 2.8620 5.5061 38 1 -0.1590 1.2546 6.9438 39 1 1.3230 2.1914 7.4221 40 1 -1.4642 3.3057 6.6257 41 1 -0.2546 4.0388 7.7670 42 1 -0.3560 7.0136 7.5782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085800450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = 39.204090 kcal Electronic energy + Delta-G solvation = -24390.560573 eV Core-core repulsion = 20953.678719 eV Total energy + Delta-G solvation = -3436.881855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.68198 -39.39935 -37.67375 -35.50843 -34.43853 -32.22581 -31.36501 -29.82500 -28.34976 -27.60969 -26.15320 -24.05764 -23.27879 -22.89027 -21.91755 -20.61544 -19.16050 -18.93343 -17.32547 -16.80975 -16.26681 -16.15236 -15.72051 -14.93433 -14.72960 -14.39125 -13.97436 -13.75639 -13.55471 -13.37168 -13.03536 -12.84190 -12.67111 -12.56778 -12.29413 -11.89078 -11.41497 -11.36284 -11.26362 -11.06993 -10.92546 -10.84997 -10.67579 -10.51365 -10.02839 -9.75661 -9.68121 -9.60320 -9.36533 -8.71481 -8.63295 -8.13353 -6.78491 -5.72003 -3.05605 1.18171 2.35470 2.81125 3.36310 3.40210 3.40713 3.42107 3.44318 4.45183 4.63212 4.73804 4.83170 5.19251 5.30214 5.40268 5.43885 5.49573 5.60753 5.65097 5.72204 5.76055 5.79446 5.90174 5.95488 6.01398 6.04300 6.12114 6.25184 6.28264 6.35218 6.37562 6.42121 6.51382 6.64193 6.77289 6.90560 7.04153 7.33012 7.51056 7.65646 7.71199 8.04966 8.35504 9.07712 9.75722 10.69196 11.43802 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.005360 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.602418 B = 5222.486125 C = 6330.939865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.096 4.096 4 C -0.224 4.224 5 C -0.017 4.017 6 O -0.154 6.154 7 C -0.067 4.067 8 C 0.594 3.406 9 O -0.523 6.523 10 N -0.589 5.589 11 C 0.082 3.918 12 C 0.121 3.879 13 C 0.129 3.871 14 H 0.049 0.951 15 C -0.156 4.156 16 C 0.149 3.851 17 N -0.603 5.603 18 C -0.224 4.224 19 H 0.085 0.915 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.902 3.098 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.206 0.794 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.081 0.919 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -8.691 -12.964 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C -0.099 4.099 4 C -0.243 4.243 5 C -0.087 4.087 6 O -0.049 6.049 7 C -0.119 4.119 8 C 0.381 3.619 9 O -0.403 6.403 10 N -0.319 5.319 11 C -0.060 4.060 12 C -0.002 4.002 13 C 0.021 3.979 14 H 0.066 0.934 15 C -0.195 4.195 16 C 0.024 3.976 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.103 0.897 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.222 0.778 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.604 -8.626 -12.563 16.609 hybrid contribution 0.041 1.258 -0.816 1.500 sum 6.645 -7.368 -13.379 16.656 Atomic orbital electron populations 1.21637 0.94427 1.01587 1.02072 1.20057 0.96365 0.90197 1.02854 1.20573 1.00411 0.97848 0.91032 1.21663 1.08029 0.94660 0.99940 1.24340 1.02941 0.99880 0.81537 1.84309 1.64718 1.33431 1.22471 1.22051 1.09648 0.85000 0.95224 1.16617 0.79153 0.84318 0.81799 1.90817 1.43909 1.23159 1.82382 1.47678 1.62868 1.14824 1.06531 1.22061 0.98168 0.82971 1.02845 1.22017 0.99071 0.99827 0.79297 1.22619 0.93582 0.87226 0.94488 0.93378 1.23728 1.00861 0.98517 0.96427 1.22360 0.92179 0.89545 0.93513 1.46121 1.56712 0.98815 1.31233 1.19278 1.32490 0.81790 1.01570 0.89716 1.24800 1.01451 0.97453 0.96772 1.69808 1.46103 1.26978 1.13623 0.86273 0.78099 0.84555 0.77793 1.21807 1.21667 1.20557 0.93319 0.92487 0.91862 0.91521 0.89537 0.83096 0.77761 0.91776 0.88412 0.92904 0.90751 0.89561 0.93045 0.90711 0.96236 0.90098 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.85 37.16 0.37 -1.40 16 2 C -0.06 -0.73 5.68 -27.88 -0.16 -0.89 16 3 C -0.10 -1.34 5.45 -104.44 -0.57 -1.91 16 4 C -0.22 -2.51 10.83 -39.89 -0.43 -2.94 16 5 C -0.02 -0.18 12.08 29.63 0.36 0.17 16 6 O -0.15 -2.22 7.43 4.99 0.04 -2.18 16 7 C -0.07 -1.07 6.84 -36.80 -0.25 -1.33 16 8 C 0.59 10.78 7.59 -12.86 -0.10 10.68 16 9 O -0.52 -10.21 14.14 5.19 0.07 -10.14 16 10 N -0.59 -10.67 2.89 -183.14 -0.53 -11.19 16 11 C 0.08 1.39 7.20 59.84 0.43 1.82 16 12 C 0.12 2.22 5.17 -4.04 -0.02 2.20 16 13 C 0.13 2.72 4.49 -66.87 -0.30 2.41 16 14 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.16 -3.04 7.86 -25.80 -0.20 -3.25 16 16 C 0.15 3.57 7.76 -2.86 -0.02 3.55 16 17 N -0.60 -15.14 3.58 -169.76 -0.61 -15.74 16 18 C -0.22 -5.97 9.76 -15.06 -0.15 -6.12 16 19 H 0.09 2.12 4.24 -52.48 -0.22 1.90 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.93 11.28 55.49 0.63 -26.31 16 22 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.97 7.64 -51.93 -0.40 0.57 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.23 6.86 -51.93 -0.36 0.87 16 31 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.06 1.15 6.82 -51.93 -0.35 0.79 16 34 H 0.10 1.76 6.44 -51.93 -0.33 1.43 16 35 H 0.05 0.77 7.17 -51.93 -0.37 0.40 16 36 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 37 H 0.09 1.58 7.80 -51.93 -0.41 1.17 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.38 8.10 -51.92 -0.42 0.96 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 2.12 6.82 -51.93 -0.35 1.76 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -31.72 339.07 -7.59 -39.30 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.13 Total: 1.86 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.14 Total: 2.68 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.51 Total: -53.24 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.11 Total: -12.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.72 -7.59 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085800450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.508 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds