Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47080 * 2 1 4 4 C 1.40363 * 126.64445 * 264.97138 * 3 2 1 5 5 C 1.35129 * 107.11897 * 180.02562 * 4 3 2 6 6 O 1.33933 * 108.76425 * 359.75416 * 5 4 3 7 7 C 1.34914 * 109.38325 * 0.40390 * 6 5 4 8 8 C 1.46661 * 125.98861 * 179.85888 * 7 6 5 9 9 O 1.21702 * 120.00137 * 174.24463 * 8 7 6 10 10 N 1.34776 * 119.99821 * 354.24925 * 8 7 6 11 11 C 1.46493 * 120.00278 * 5.10883 * 10 8 7 12 12 C 1.46505 * 119.99804 * 185.38130 * 10 8 7 13 13 C 1.52996 * 109.47082 * 275.78486 * 12 10 8 14 14 H 1.08994 * 112.96679 * 50.82566 * 13 12 10 15 15 C 1.53946 * 113.76872 * 182.50453 * 13 12 10 16 16 C 1.53938 * 86.29143 * 137.90563 * 15 13 12 17 17 N 1.47579 * 113.77004 * 279.14321 * 13 12 10 18 18 C 1.36939 * 134.48966 * 41.07239 * 17 13 12 19 19 H 1.08004 * 120.00430 * 8.93826 * 18 17 13 20 20 C 1.38811 * 119.99899 * 188.94277 * 18 17 13 21 21 N 1.31614 * 120.00378 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46996 * 89.99587 * 22 20 18 24 24 H 1.48498 * 109.47237 * 209.99682 * 22 20 18 25 25 H 1.48493 * 109.46968 * 329.99697 * 22 20 18 26 26 H 1.09003 * 109.46731 * 60.00265 * 1 2 3 27 27 H 1.09005 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47350 * 300.00366 * 1 2 3 29 29 H 1.08997 * 109.47046 * 239.99267 * 2 1 3 30 30 H 1.09003 * 109.46731 * 119.99735 * 2 1 3 31 31 H 1.08003 * 126.44120 * 0.02562 * 4 3 2 32 32 H 1.07991 * 125.62026 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47506 * 59.70452 * 11 10 8 34 34 H 1.08993 * 109.47523 * 179.70808 * 11 10 8 35 35 H 1.09003 * 109.46828 * 299.70829 * 11 10 8 36 36 H 1.09004 * 109.46960 * 35.78527 * 12 10 8 37 37 H 1.08995 * 109.46974 * 155.78311 * 12 10 8 38 38 H 1.08997 * 113.74221 * 252.25391 * 15 13 12 39 39 H 1.09007 * 113.74034 * 23.45096 * 15 13 12 40 40 H 1.09001 * 113.77180 * 90.69867 * 16 15 13 41 41 H 1.09007 * 113.76997 * 221.98156 * 16 15 13 42 42 H 0.97001 * 120.00578 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4047 2.1777 -1.1219 5 6 2.7924 3.3915 -0.6719 6 8 2.6711 3.4155 0.6617 7 6 2.2140 2.2211 1.0913 8 6 1.9523 1.8493 2.4857 9 8 1.4412 0.7753 2.7434 10 7 2.2777 2.6972 3.4815 11 6 2.7886 4.0338 3.1680 12 6 2.1260 2.2798 4.8777 13 6 0.6818 2.5130 5.3257 14 1 -0.0503 2.0863 4.6402 15 6 0.4262 2.1632 6.8029 16 6 -0.4102 3.4543 6.8602 17 7 0.3957 3.9095 5.7078 18 6 0.7397 5.1334 5.1989 19 1 1.2357 5.2003 4.2418 20 6 0.4509 6.2881 5.9131 21 7 -0.1539 6.2067 7.0792 22 14 0.9196 7.9577 5.2186 23 1 -0.1997 8.4837 4.3966 24 1 1.1986 8.8973 6.3342 25 1 2.1323 7.8193 4.3730 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3850 1.8514 -2.1512 32 1 3.1393 4.2088 -1.2867 33 1 2.0465 4.5790 2.5847 34 1 2.9900 4.5723 4.0940 35 1 3.7096 3.9448 2.5918 36 1 2.3682 1.2209 4.9687 37 1 2.7999 2.8620 5.5061 38 1 -0.1590 1.2546 6.9438 39 1 1.3230 2.1914 7.4221 40 1 -1.4642 3.3057 6.6257 41 1 -0.2546 4.0388 7.7670 42 1 -0.3560 7.0136 7.5782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085800450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = 20.115412 kcal Electronic energy + Delta-G solvation = -24391.388321 eV Core-core repulsion = 20953.678719 eV Total energy + Delta-G solvation = -3437.709602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67823 -40.83383 -39.37679 -36.78538 -35.61509 -34.25875 -32.32218 -31.07308 -30.04282 -29.25548 -27.53029 -25.29160 -25.21962 -24.21567 -23.04502 -21.77437 -20.87325 -20.20684 -18.85647 -18.34641 -17.48883 -17.39764 -16.95614 -16.76379 -16.23535 -15.77559 -15.42154 -15.14501 -14.89078 -14.70223 -14.54690 -14.03700 -13.98951 -13.69083 -13.47410 -13.26834 -13.10783 -13.00534 -12.93987 -12.65152 -12.47341 -12.28662 -12.24472 -11.91224 -11.74709 -11.47227 -11.28438 -11.06898 -10.75864 -10.66147 -9.81192 -9.44032 -8.81354 -7.81546 -5.16556 0.08667 1.44781 1.45405 1.47280 1.55102 1.72347 2.12738 2.19481 2.49731 3.35198 3.42612 3.59538 3.79185 3.88301 3.98271 4.21825 4.29674 4.38868 4.41259 4.46623 4.49329 4.57126 4.58888 4.62696 4.70602 4.83550 4.87394 4.90384 4.99628 5.05575 5.06346 5.07821 5.28987 5.35428 5.36896 5.43007 5.53623 5.63607 5.74727 5.96783 6.02102 6.34760 6.97980 7.00654 7.69498 8.67025 9.34575 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.005360 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.602418 B = 5222.486125 C = 6330.939865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.058 4.058 3 C -0.092 4.092 4 C -0.229 4.229 5 C 0.002 3.998 6 O -0.169 6.169 7 C -0.112 4.112 8 C 0.589 3.411 9 O -0.548 6.548 10 N -0.598 5.598 11 C 0.092 3.908 12 C 0.130 3.870 13 C 0.131 3.869 14 H 0.029 0.971 15 C -0.129 4.129 16 C 0.139 3.861 17 N -0.624 5.624 18 C -0.222 4.222 19 H 0.098 0.902 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.963 3.037 23 H -0.296 1.296 24 H -0.298 1.298 25 H -0.256 1.256 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.184 0.816 32 H 0.251 0.749 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.007 0.993 41 H 0.054 0.946 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -9.071 -15.834 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.095 4.095 4 C -0.248 4.248 5 C -0.068 4.068 6 O -0.065 6.065 7 C -0.164 4.164 8 C 0.378 3.622 9 O -0.430 6.430 10 N -0.328 5.328 11 C -0.051 4.051 12 C 0.006 3.994 13 C 0.024 3.976 14 H 0.046 0.954 15 C -0.167 4.167 16 C 0.014 3.986 17 N -0.351 5.351 18 C -0.350 4.350 19 H 0.116 0.884 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.792 3.208 23 H -0.224 1.224 24 H -0.224 1.224 25 H -0.180 1.180 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.201 0.799 32 H 0.267 0.733 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.262 -9.034 -15.460 19.720 hybrid contribution -0.497 1.316 -0.069 1.408 sum 7.764 -7.718 -15.529 19.000 Atomic orbital electron populations 1.21586 0.94499 1.02273 1.00879 1.20106 0.96226 0.89917 1.03316 1.20963 0.98795 0.98152 0.91561 1.22043 1.07774 0.94344 1.00638 1.25351 1.00129 1.00965 0.80313 1.84268 1.65082 1.32815 1.24349 1.21711 1.13539 0.86574 0.94548 1.16949 0.78441 0.83945 0.82837 1.90783 1.44955 1.24072 1.83152 1.47756 1.63330 1.15316 1.06396 1.21952 0.98778 0.82182 1.02153 1.21827 0.96870 1.00771 0.79900 1.22646 0.94856 0.84901 0.95233 0.95357 1.23524 1.00682 0.97323 0.95217 1.22328 0.92190 0.91793 0.92274 1.46509 1.56967 0.99933 1.31642 1.19763 1.30949 0.82586 1.01742 0.88425 1.25601 1.02395 1.00934 0.97365 1.70013 1.48143 1.27159 1.15111 0.85292 0.78372 0.80122 0.77018 1.22370 1.22437 1.17979 0.92002 0.90942 0.95391 0.88472 0.91572 0.79865 0.73273 0.93034 0.89780 0.90422 0.89255 0.89415 0.90167 0.89183 0.97522 0.92759 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.85 71.98 0.71 -2.56 16 2 C -0.06 -1.39 5.68 29.85 0.17 -1.23 16 3 C -0.09 -2.38 5.45 -19.74 -0.11 -2.49 16 4 C -0.23 -4.27 10.83 22.07 0.24 -4.03 16 5 C 0.00 0.03 12.08 67.10 0.81 0.84 16 6 O -0.17 -4.50 7.43 -5.06 -0.04 -4.54 16 7 C -0.11 -3.49 6.84 24.07 0.16 -3.33 16 8 C 0.59 21.45 7.59 86.44 0.66 22.10 16 9 O -0.55 -21.79 14.14 -4.35 -0.06 -21.85 16 10 N -0.60 -21.54 2.89 -851.53 -2.46 -24.00 16 11 C 0.09 3.03 7.20 127.77 0.92 3.95 16 12 C 0.13 4.71 5.17 86.38 0.45 5.16 16 13 C 0.13 5.53 4.49 45.09 0.20 5.74 16 14 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.13 -4.94 7.86 31.25 0.25 -4.69 16 16 C 0.14 6.86 7.76 86.43 0.67 7.53 16 17 N -0.62 -31.90 3.58 -691.00 -2.47 -34.37 16 18 C -0.22 -11.99 9.76 84.03 0.82 -11.17 16 19 H 0.10 4.89 4.24 -2.91 -0.01 4.88 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.95 -57.79 11.28 21.65 0.24 -57.54 16 22 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.03 0.86 7.64 -2.39 -0.02 0.84 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 1.86 6.86 -2.39 -0.02 1.84 16 31 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.25 1.82 8.06 -2.92 -0.02 1.80 16 33 H 0.05 1.81 6.82 -2.39 -0.02 1.80 16 34 H 0.08 2.98 6.44 -2.39 -0.02 2.97 16 35 H 0.08 2.15 7.17 -2.39 -0.02 2.13 16 36 H 0.09 2.98 7.69 -2.38 -0.02 2.96 16 37 H 0.09 3.16 7.80 -2.39 -0.02 3.14 16 38 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.09 3.20 8.10 -2.38 -0.02 3.18 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.05 2.96 6.82 -2.38 -0.02 2.94 16 42 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.46 339.07 4.67 -66.79 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.02 Total: 16.31 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.41 Total: 12.32 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -4.68 Total: -115.91 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.10 Total: -26.39 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.46 4.67 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085800450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.904 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds