Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46959 * 2 1 4 4 C 1.40366 * 126.64388 * 265.13333 * 3 2 1 5 5 C 1.35132 * 107.11180 * 180.29870 * 4 3 2 6 6 O 1.33929 * 108.77051 * 359.74567 * 5 4 3 7 7 C 1.34916 * 109.37824 * 0.02562 * 6 5 4 8 8 C 1.46665 * 125.98016 * 180.02562 * 7 6 5 9 9 O 1.21698 * 119.99324 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00133 * 0.02562 * 8 7 6 11 11 C 1.46509 * 119.99581 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46802 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.84746 * 43.80477 * 12 11 10 14 14 C 1.53781 * 113.61341 * 174.99846 * 12 11 10 15 15 C 1.53781 * 87.08070 * 140.06609 * 14 12 11 16 16 H 1.09002 * 113.61445 * 89.11830 * 15 14 12 17 17 N 1.46497 * 113.61305 * 219.93536 * 15 14 12 18 18 C 1.36944 * 119.99791 * 203.46713 * 17 15 14 19 19 H 1.07993 * 120.00042 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99770 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46991 * 60.00036 * 22 20 18 24 24 H 1.48495 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47014 * 300.00285 * 22 20 18 26 26 C 1.53786 * 87.17350 * 334.52830 * 15 14 12 27 27 H 1.09001 * 109.46719 * 299.99907 * 1 2 3 28 28 H 1.08992 * 109.47365 * 59.99802 * 1 2 3 29 29 H 1.08996 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46719 * 240.00093 * 2 1 3 31 31 H 1.08992 * 109.47365 * 120.00198 * 2 1 3 32 32 H 1.08002 * 126.44725 * 0.04856 * 4 3 2 33 33 H 1.08008 * 125.61541 * 179.78234 * 5 4 3 34 34 H 0.96997 * 120.00572 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47110 * 59.99931 * 11 10 8 36 36 H 1.08998 * 109.47069 * 299.99860 * 11 10 8 37 37 H 1.08999 * 113.61181 * 25.51665 * 14 12 11 38 38 H 1.09000 * 113.69133 * 254.62492 * 14 12 11 39 39 H 0.96995 * 120.00146 * 23.47603 * 17 15 14 40 40 H 0.96996 * 120.00281 * 179.97438 * 21 20 18 41 41 H 1.08992 * 113.61675 * 140.02412 * 26 15 14 42 42 H 1.09000 * 113.60973 * 270.92699 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4016 2.1788 -1.1222 5 6 2.7963 3.3901 -0.6715 6 8 2.6818 3.4117 0.6628 7 6 2.2145 2.2208 1.0913 8 6 1.9526 1.8492 2.4857 9 8 1.5299 0.7391 2.7503 10 7 2.1800 2.7370 3.4738 11 6 1.9189 2.3655 4.8668 12 6 2.2581 3.5444 5.7811 13 1 1.8938 4.4969 5.3964 14 6 1.9041 3.3005 7.2577 15 6 3.2235 4.0078 7.6093 16 1 3.1232 5.0871 7.7243 17 7 3.9471 3.3822 8.7189 18 6 4.8392 4.1158 9.4547 19 1 5.0090 5.1556 9.2172 20 6 5.5244 3.5232 10.5064 21 7 5.3172 2.2561 10.7962 22 14 6.7408 4.5240 11.5106 23 1 6.0376 5.6701 12.1410 24 1 7.3353 3.6659 12.5666 25 1 7.8169 5.0317 10.6219 26 6 3.7335 3.5809 6.2226 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3789 1.8537 -2.1519 33 1 3.1459 4.2066 -1.2860 34 1 2.5173 3.6217 3.2629 35 1 2.5358 1.5081 5.1359 36 1 0.8665 2.1065 4.9825 37 1 1.8867 2.2462 7.5340 38 1 1.0173 3.8400 7.5903 39 1 3.7945 2.4484 8.9323 40 1 5.7962 1.8419 11.5308 41 1 4.3226 4.3473 5.7191 42 1 4.2153 2.6032 6.2167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086188706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -2.621969 kcal Electronic energy + Delta-G solvation = -22542.753495 eV Core-core repulsion = 19104.057926 eV Total energy + Delta-G solvation = -3438.695569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.97092 -39.66311 -38.40803 -35.49147 -34.50876 -33.28486 -31.63954 -30.48274 -29.72274 -27.31132 -25.09673 -24.43487 -23.77062 -22.81215 -21.43643 -21.00330 -19.98761 -19.08891 -18.18870 -17.04143 -16.63536 -16.28347 -16.11373 -15.20727 -14.93850 -14.66340 -14.56956 -14.12328 -13.87099 -13.58500 -13.31375 -13.27236 -12.95174 -12.84413 -12.58822 -11.92570 -11.82569 -11.54572 -11.39194 -11.26820 -11.14251 -10.82766 -10.55621 -10.35327 -10.18553 -10.03556 -9.97951 -9.82637 -9.50959 -9.19976 -8.86863 -8.78326 -6.96310 -5.78015 -3.06981 0.84292 2.07231 2.47415 3.03999 3.14050 3.43285 3.47682 3.48865 4.39806 4.46089 4.58341 4.63284 4.95030 4.98138 5.06134 5.14625 5.21984 5.24709 5.37301 5.45743 5.46569 5.49654 5.66441 5.79140 5.79963 5.82862 5.91710 5.99543 6.07825 6.08945 6.12021 6.23658 6.29868 6.35252 6.41271 6.58596 6.61006 6.82024 7.11200 7.38493 7.68711 7.99685 8.40647 9.51522 10.09825 10.44036 11.44340 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.002549 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.963892 B =10984.078698 C =11336.684124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.086 4.086 4 C -0.224 4.224 5 C -0.007 4.007 6 O -0.163 6.163 7 C -0.080 4.080 8 C 0.598 3.402 9 O -0.518 6.518 10 N -0.714 5.714 11 C 0.132 3.868 12 C -0.128 4.128 13 H 0.089 0.911 14 C -0.141 4.141 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.161 4.161 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.209 0.791 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 1.119 -25.188 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.089 4.089 4 C -0.243 4.243 5 C -0.077 4.077 6 O -0.059 6.059 7 C -0.132 4.132 8 C 0.384 3.616 9 O -0.396 6.396 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.147 4.147 13 H 0.107 0.893 14 C -0.181 4.181 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.202 4.202 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.172 0.828 33 H 0.226 0.774 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.952 0.675 -24.598 26.185 hybrid contribution 0.919 0.676 0.156 1.151 sum -8.033 1.351 -24.443 25.764 Atomic orbital electron populations 1.21632 0.94371 1.01850 1.01813 1.20139 0.96359 0.90126 1.03443 1.20643 0.99518 0.97688 0.91055 1.21739 1.07791 0.94562 1.00189 1.24347 1.02438 1.00096 0.80789 1.84069 1.64884 1.33841 1.23068 1.21976 1.10694 0.85428 0.95124 1.16550 0.78449 0.84825 0.81773 1.90864 1.46152 1.20474 1.82133 1.45980 1.66285 1.16999 1.07116 1.21529 1.01222 0.98116 0.78238 1.22699 0.99651 0.97249 0.95134 0.89305 1.23422 0.99688 1.01929 0.93021 1.21517 0.90019 0.96101 0.87002 0.90743 1.42406 1.47315 1.11645 1.33739 1.19254 1.15312 0.94212 1.08798 0.91164 1.24772 1.00662 0.96166 0.99314 1.69650 1.45603 1.10756 1.32047 0.86264 0.81123 0.78966 0.79803 1.21230 1.21676 1.21256 1.24007 0.93497 1.01936 1.00805 0.92235 0.93172 0.92231 0.91144 0.89152 0.82766 0.77399 0.76073 0.90821 0.91353 0.90033 0.91921 0.78054 0.93384 0.92731 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.06 -0.64 5.72 -27.88 -0.16 -0.80 16 3 C -0.09 -0.93 5.45 -104.44 -0.57 -1.50 16 4 C -0.22 -1.84 10.83 -39.89 -0.43 -2.27 16 5 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 6 O -0.16 -1.67 10.40 5.00 0.05 -1.62 16 7 C -0.08 -0.96 7.13 -36.80 -0.26 -1.22 16 8 C 0.60 8.13 7.79 -12.86 -0.10 8.03 16 9 O -0.52 -8.28 14.62 5.19 0.08 -8.21 16 10 N -0.71 -8.69 5.55 -61.62 -0.34 -9.03 16 11 C 0.13 1.73 5.52 -4.04 -0.02 1.71 16 12 C -0.13 -1.71 3.76 -89.67 -0.34 -2.05 16 13 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 15 C 0.17 3.20 4.47 -67.12 -0.30 2.90 16 16 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 17 N -0.71 -17.81 5.41 -52.64 -0.28 -18.09 16 18 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.16 -2.68 7.45 -25.77 -0.19 -2.87 16 27 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.21 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.40 4.21 8.23 -40.82 -0.34 3.88 16 35 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.34 8.07 -51.93 -0.42 0.93 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -32.23 354.81 -7.97 -40.20 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.43 Total: 10.13 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.09 Total: -8.53 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.10 Total: -54.65 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.13 Total: -9.83 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.23 -7.97 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086188706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.578 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds