Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46959 * 2 1 4 4 C 1.40366 * 126.64388 * 265.13333 * 3 2 1 5 5 C 1.35132 * 107.11180 * 180.29870 * 4 3 2 6 6 O 1.33929 * 108.77051 * 359.74567 * 5 4 3 7 7 C 1.34916 * 109.37824 * 0.02562 * 6 5 4 8 8 C 1.46665 * 125.98016 * 180.02562 * 7 6 5 9 9 O 1.21698 * 119.99324 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00133 * 0.02562 * 8 7 6 11 11 C 1.46509 * 119.99581 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46802 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.84746 * 43.80477 * 12 11 10 14 14 C 1.53781 * 113.61341 * 174.99846 * 12 11 10 15 15 C 1.53781 * 87.08070 * 140.06609 * 14 12 11 16 16 H 1.09002 * 113.61445 * 89.11830 * 15 14 12 17 17 N 1.46497 * 113.61305 * 219.93536 * 15 14 12 18 18 C 1.36944 * 119.99791 * 203.46713 * 17 15 14 19 19 H 1.07993 * 120.00042 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99770 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46991 * 60.00036 * 22 20 18 24 24 H 1.48495 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47014 * 300.00285 * 22 20 18 26 26 C 1.53786 * 87.17350 * 334.52830 * 15 14 12 27 27 H 1.09001 * 109.46719 * 299.99907 * 1 2 3 28 28 H 1.08992 * 109.47365 * 59.99802 * 1 2 3 29 29 H 1.08996 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46719 * 240.00093 * 2 1 3 31 31 H 1.08992 * 109.47365 * 120.00198 * 2 1 3 32 32 H 1.08002 * 126.44725 * 0.04856 * 4 3 2 33 33 H 1.08008 * 125.61541 * 179.78234 * 5 4 3 34 34 H 0.96997 * 120.00572 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47110 * 59.99931 * 11 10 8 36 36 H 1.08998 * 109.47069 * 299.99860 * 11 10 8 37 37 H 1.08999 * 113.61181 * 25.51665 * 14 12 11 38 38 H 1.09000 * 113.69133 * 254.62492 * 14 12 11 39 39 H 0.96995 * 120.00146 * 23.47603 * 17 15 14 40 40 H 0.96996 * 120.00281 * 179.97438 * 21 20 18 41 41 H 1.08992 * 113.61675 * 140.02412 * 26 15 14 42 42 H 1.09000 * 113.60973 * 270.92699 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4016 2.1788 -1.1222 5 6 2.7963 3.3901 -0.6715 6 8 2.6818 3.4117 0.6628 7 6 2.2145 2.2208 1.0913 8 6 1.9526 1.8492 2.4857 9 8 1.5299 0.7391 2.7503 10 7 2.1800 2.7370 3.4738 11 6 1.9189 2.3655 4.8668 12 6 2.2581 3.5444 5.7811 13 1 1.8938 4.4969 5.3964 14 6 1.9041 3.3005 7.2577 15 6 3.2235 4.0078 7.6093 16 1 3.1232 5.0871 7.7243 17 7 3.9471 3.3822 8.7189 18 6 4.8392 4.1158 9.4547 19 1 5.0090 5.1556 9.2172 20 6 5.5244 3.5232 10.5064 21 7 5.3172 2.2561 10.7962 22 14 6.7408 4.5240 11.5106 23 1 6.0376 5.6701 12.1410 24 1 7.3353 3.6659 12.5666 25 1 7.8169 5.0317 10.6219 26 6 3.7335 3.5809 6.2226 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3789 1.8537 -2.1519 33 1 3.1459 4.2066 -1.2860 34 1 2.5173 3.6217 3.2629 35 1 2.5358 1.5081 5.1359 36 1 0.8665 2.1065 4.9825 37 1 1.8867 2.2462 7.5340 38 1 1.0173 3.8400 7.5903 39 1 3.7945 2.4484 8.9323 40 1 5.7962 1.8419 11.5308 41 1 4.3226 4.3473 5.7191 42 1 4.2153 2.6032 6.2167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086188706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -23.995199 kcal Electronic energy + Delta-G solvation = -22543.680308 eV Core-core repulsion = 19104.057926 eV Total energy + Delta-G solvation = -3439.622382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.68266 -40.76772 -39.72261 -36.43255 -35.73809 -34.96614 -32.40124 -32.17020 -30.74956 -28.52628 -26.47078 -25.95327 -24.98094 -23.66657 -22.55039 -22.02093 -21.00861 -20.37846 -19.21081 -18.89720 -17.42870 -17.26846 -17.06014 -16.57469 -16.33020 -15.85782 -15.67764 -15.34056 -15.10840 -14.80765 -14.63157 -14.36928 -13.96576 -13.59933 -13.42531 -13.30689 -13.24411 -13.03009 -12.92279 -12.62615 -12.29278 -12.25943 -12.11494 -11.98002 -11.62185 -11.56486 -11.20067 -11.02532 -10.80772 -10.69675 -10.24749 -9.55609 -8.97855 -7.94321 -5.22836 0.03815 1.42599 1.47029 1.50177 1.56280 1.70262 2.08578 2.24314 2.56946 3.37206 3.65178 3.71912 3.74356 3.78908 3.86675 3.94884 4.24736 4.33563 4.39714 4.40315 4.44595 4.50915 4.54357 4.60769 4.72886 4.83266 4.95529 4.97590 5.01535 5.03243 5.06275 5.18131 5.25794 5.31344 5.32939 5.39136 5.45990 5.52031 5.71651 5.87777 6.27949 6.44991 7.02096 7.33353 8.11755 8.33549 9.29078 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.002549 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.963892 B =10984.078698 C =11336.684124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C -0.091 4.091 4 C -0.234 4.234 5 C 0.013 3.987 6 O -0.171 6.171 7 C -0.116 4.116 8 C 0.594 3.406 9 O -0.553 6.553 10 N -0.706 5.706 11 C 0.138 3.862 12 C -0.096 4.096 13 H 0.120 0.880 14 C -0.134 4.134 15 C 0.144 3.856 16 H 0.080 0.920 17 N -0.730 5.730 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.278 1.278 26 C -0.155 4.155 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.182 0.818 33 H 0.255 0.745 34 H 0.415 0.585 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.065 0.935 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 3.252 -27.873 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.094 4.094 4 C -0.253 4.253 5 C -0.056 4.056 6 O -0.067 6.067 7 C -0.167 4.167 8 C 0.382 3.618 9 O -0.434 6.434 10 N -0.357 5.357 11 C 0.015 3.985 12 C -0.115 4.115 13 H 0.138 0.862 14 C -0.173 4.173 15 C 0.034 3.966 16 H 0.098 0.902 17 N -0.368 5.368 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.204 1.204 26 C -0.196 4.196 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.199 0.801 33 H 0.271 0.729 34 H 0.251 0.749 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.190 2.871 -27.332 28.978 hybrid contribution 0.959 0.054 0.828 1.268 sum -8.231 2.925 -26.504 27.907 Atomic orbital electron populations 1.21584 0.93945 1.02328 1.01290 1.20155 0.96744 0.90163 1.03195 1.20974 0.98637 0.97846 0.91925 1.22081 1.07934 0.94530 1.00715 1.25334 0.99587 1.00941 0.79763 1.84057 1.64987 1.33025 1.24627 1.21653 1.13778 0.86815 0.94477 1.16822 0.77826 0.84432 0.82762 1.90836 1.47827 1.21836 1.82936 1.45851 1.66066 1.17349 1.06410 1.21332 1.01016 0.97253 0.78884 1.22522 0.96607 0.98644 0.93775 0.86168 1.23298 0.98470 1.01004 0.94544 1.21948 0.91762 0.96519 0.86353 0.90160 1.42629 1.47839 1.11113 1.35200 1.19694 1.14812 0.94643 1.08374 0.90342 1.25608 1.03195 0.97278 1.01094 1.69819 1.47192 1.12508 1.32814 0.85206 0.78966 0.77506 0.78062 1.20183 1.22394 1.20409 1.23793 0.95709 1.00885 0.99204 0.94646 0.91630 0.91319 0.88926 0.91778 0.80085 0.72895 0.74864 0.92956 0.90919 0.91261 0.90066 0.79624 0.94083 0.91582 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.07 -1.29 5.72 29.85 0.17 -1.12 16 3 C -0.09 -1.86 5.45 -19.74 -0.11 -1.97 16 4 C -0.23 -3.12 10.83 22.07 0.24 -2.89 16 5 C 0.01 0.14 12.08 67.10 0.81 0.95 16 6 O -0.17 -3.14 10.40 -5.04 -0.05 -3.19 16 7 C -0.12 -2.70 7.13 24.07 0.17 -2.53 16 8 C 0.59 16.36 7.79 86.44 0.67 17.03 16 9 O -0.55 -18.49 14.62 -4.34 -0.06 -18.56 16 10 N -0.71 -16.76 5.55 -467.07 -2.59 -19.36 16 11 C 0.14 3.57 5.52 86.38 0.48 4.05 16 12 C -0.10 -2.41 3.76 -10.18 -0.04 -2.45 16 13 H 0.12 2.36 8.14 -2.39 -0.02 2.35 16 14 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 15 C 0.14 5.46 4.47 45.52 0.20 5.66 16 16 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 17 N -0.73 -37.08 5.41 -320.44 -1.73 -38.81 16 18 C -0.24 -13.56 9.97 84.03 0.84 -12.72 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 21 N -0.97 -60.54 13.06 21.65 0.28 -60.25 16 22 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.16 -5.05 7.45 31.21 0.23 -4.82 16 27 H 0.03 0.81 7.90 -2.39 -0.02 0.79 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.61 6.73 -2.39 -0.02 1.60 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.26 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.41 7.98 8.23 -92.71 -0.76 7.22 16 35 H 0.05 1.59 7.85 -2.39 -0.02 1.57 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.37 20.50 7.91 -92.71 -0.73 19.77 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.09 7.91 -2.39 -0.02 2.08 16 Total: -1.00 -72.39 354.81 2.48 -69.91 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.46 Total: 32.43 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.08 Total: -10.57 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.04 Total: -118.42 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.12 Total: -21.75 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.39 2.48 -69.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086188706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.912 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds