Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47241 * 2 1 4 4 C 1.40361 * 126.64849 * 265.12852 * 3 2 1 5 5 C 1.35122 * 107.11753 * 180.29863 * 4 3 2 6 6 O 1.33934 * 108.76944 * 359.74912 * 5 4 3 7 7 C 1.34919 * 109.38207 * 359.97438 * 6 5 4 8 8 C 1.46656 * 125.98939 * 180.02562 * 7 6 5 9 9 O 1.21693 * 120.00062 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99556 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47283 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.84933 * 316.19853 * 12 11 10 14 14 C 1.53781 * 113.69221 * 87.46423 * 12 11 10 15 15 C 1.54049 * 87.08031 * 139.98770 * 14 12 11 16 16 H 1.08992 * 113.69868 * 220.05225 * 15 14 12 17 17 N 1.46506 * 113.61276 * 89.07129 * 15 14 12 18 18 C 1.36931 * 119.99757 * 107.62016 * 17 15 14 19 19 H 1.08000 * 120.00368 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99913 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47051 * 89.99977 * 22 20 18 24 24 H 1.48498 * 109.46981 * 209.99818 * 22 20 18 25 25 H 1.48500 * 109.46961 * 329.99852 * 22 20 18 26 26 C 1.53781 * 113.61503 * 185.00012 * 12 11 10 27 27 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47136 * 299.99831 * 1 2 3 29 29 H 1.09004 * 109.47461 * 60.00069 * 1 2 3 30 30 H 1.08996 * 109.47512 * 239.99821 * 2 1 3 31 31 H 1.09004 * 109.47461 * 119.99930 * 2 1 3 32 32 H 1.08009 * 126.44093 * 0.04555 * 4 3 2 33 33 H 1.08001 * 125.61503 * 179.78276 * 5 4 3 34 34 H 0.97001 * 120.00396 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47315 * 59.99868 * 11 10 8 36 36 H 1.09001 * 109.46863 * 300.00267 * 11 10 8 37 37 H 1.09005 * 113.61471 * 254.54353 * 14 12 11 38 38 H 1.08996 * 113.61178 * 25.35695 * 14 12 11 39 39 H 0.97002 * 119.99888 * 287.62233 * 17 15 14 40 40 H 0.96998 * 119.99784 * 180.02562 * 21 20 18 41 41 H 1.09002 * 113.61445 * 334.48413 * 26 12 11 42 42 H 1.09002 * 113.61408 * 105.30144 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4018 2.1789 -1.1221 5 6 2.7964 3.3900 -0.6714 6 8 2.6819 3.4117 0.6629 7 6 2.2135 2.2212 1.0914 8 6 1.9512 1.8496 2.4856 9 8 1.5274 0.7399 2.7502 10 7 2.1794 2.7372 3.4738 11 6 1.9178 2.3658 4.8667 12 6 2.2569 3.5447 5.7811 13 1 3.1966 4.0292 5.5162 14 6 1.0913 4.5281 5.9793 15 6 1.5223 4.6186 7.4555 16 1 0.6868 4.6456 8.1549 17 7 2.5160 5.6637 7.7137 18 6 2.1531 6.8041 8.3791 19 1 1.1345 6.9330 8.7140 20 6 3.0946 7.7946 8.6233 21 7 4.3361 7.6373 8.2157 22 14 2.5997 9.3501 9.5317 23 1 2.7926 9.1537 10.9909 24 1 3.4415 10.4825 9.0691 25 1 1.1715 9.6504 9.2572 26 6 2.1328 3.2183 7.2787 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3791 1.8536 -2.1518 33 1 3.1461 4.2064 -1.2860 34 1 2.5167 3.6218 3.2629 35 1 2.5339 1.5079 5.1359 36 1 0.8652 2.1077 4.9824 37 1 1.2106 5.4628 5.4314 38 1 0.1098 4.0762 5.8366 39 1 3.4310 5.5478 7.4133 40 1 4.9940 8.3293 8.3867 41 1 1.4359 2.4079 7.4927 42 1 3.0929 3.0941 7.7795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086467325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -1.928042 kcal Electronic energy + Delta-G solvation = -22700.479105 eV Core-core repulsion = 19261.813627 eV Total energy + Delta-G solvation = -3438.665478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.91711 -39.64008 -38.44810 -35.45853 -34.47128 -33.21423 -31.59809 -30.42781 -29.64913 -27.30613 -25.06596 -24.38332 -23.67370 -22.81310 -21.79919 -21.14624 -19.96452 -18.60510 -18.01694 -17.27384 -16.56986 -16.23602 -16.01337 -15.18097 -14.83827 -14.74366 -14.29348 -14.11734 -13.87994 -13.67466 -13.26176 -13.23946 -12.91771 -12.79799 -12.56698 -12.29963 -11.93281 -11.52366 -11.42645 -11.13950 -11.05546 -10.85977 -10.51089 -10.31804 -10.17526 -9.96719 -9.87639 -9.70627 -9.50853 -9.16322 -8.90245 -8.73633 -7.01661 -5.82208 -3.11280 0.89030 2.11950 2.53585 3.07665 3.19375 3.40930 3.46292 3.47829 4.45122 4.50032 4.54477 4.67378 5.03093 5.04453 5.09216 5.18134 5.21937 5.27082 5.40600 5.43742 5.49619 5.60483 5.66901 5.72373 5.80373 5.84417 5.92710 6.02323 6.08259 6.10671 6.16468 6.19955 6.34439 6.36445 6.56877 6.65672 6.73751 6.87834 7.03114 7.43726 7.67668 8.03122 8.36989 9.47659 10.05151 10.39336 11.40253 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.002809 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.252459 B = 9963.797965 C =10687.030630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.087 4.087 4 C -0.225 4.225 5 C -0.005 4.005 6 O -0.161 6.161 7 C -0.081 4.081 8 C 0.599 3.401 9 O -0.522 6.522 10 N -0.713 5.713 11 C 0.131 3.869 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.169 4.169 15 C 0.168 3.832 16 H 0.063 0.937 17 N -0.706 5.706 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.147 4.147 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.077 0.923 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 -12.925 -18.487 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.244 4.244 5 C -0.075 4.075 6 O -0.057 6.057 7 C -0.133 4.133 8 C 0.385 3.615 9 O -0.401 6.401 10 N -0.363 5.363 11 C 0.008 3.992 12 C -0.139 4.139 13 H 0.112 0.888 14 C -0.210 4.210 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.187 4.187 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.172 0.828 33 H 0.226 0.774 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.736 -13.301 -17.922 22.815 hybrid contribution 0.386 1.350 -0.152 1.413 sum -4.350 -11.950 -18.074 22.100 Atomic orbital electron populations 1.21636 0.94389 1.01777 1.01902 1.20123 0.96350 0.90149 1.03307 1.20631 0.99657 0.97674 0.91062 1.21726 1.07963 0.94581 1.00156 1.24368 1.02241 1.00048 0.80801 1.84095 1.64697 1.33800 1.23072 1.21972 1.10717 0.85443 0.95134 1.16550 0.78377 0.84795 0.81803 1.90842 1.46393 1.20641 1.82209 1.46010 1.66051 1.17098 1.07101 1.21565 1.01154 0.97958 0.78521 1.22718 1.00506 0.95616 0.95096 0.88828 1.23947 0.95987 0.98600 1.02496 1.21099 0.92624 0.87660 0.93087 0.91887 1.42175 1.08356 1.16839 1.67054 1.19291 0.95194 0.94414 1.28443 0.90979 1.24770 0.95627 0.98937 1.01564 1.69661 1.01988 1.34895 1.51528 0.86167 0.77465 0.82950 0.79475 1.21643 1.21759 1.20695 1.23445 1.01777 0.99449 0.94009 0.92292 0.92201 0.93137 0.91201 0.89252 0.82779 0.77377 0.75789 0.91440 0.91208 0.91503 0.91364 0.78101 0.93429 0.90401 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.15 0.37 -0.99 16 2 C -0.06 -0.64 5.72 -27.88 -0.16 -0.80 16 3 C -0.09 -0.98 5.45 -104.43 -0.57 -1.55 16 4 C -0.23 -1.99 10.83 -39.89 -0.43 -2.42 16 5 C 0.00 -0.04 12.08 29.62 0.36 0.32 16 6 O -0.16 -1.84 10.40 4.97 0.05 -1.79 16 7 C -0.08 -1.02 7.13 -36.80 -0.26 -1.29 16 8 C 0.60 8.43 7.79 -12.87 -0.10 8.32 16 9 O -0.52 -8.33 14.62 5.19 0.08 -8.25 16 10 N -0.71 -9.36 5.55 -61.63 -0.34 -9.70 16 11 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 12 C -0.12 -1.80 3.63 -89.81 -0.33 -2.13 16 13 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 14 C -0.17 -2.81 7.44 -25.78 -0.19 -3.00 16 15 C 0.17 3.24 4.58 -66.97 -0.31 2.94 16 16 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 17 N -0.71 -17.32 5.31 -52.50 -0.28 -17.60 16 18 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.15 -2.33 7.38 -25.92 -0.19 -2.52 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.06 6.74 -51.93 -0.35 0.71 16 32 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.41 5.00 8.23 -40.82 -0.34 4.66 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 39 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -31.46 354.67 -7.96 -39.42 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.43 Total: 11.15 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.08 Total: -8.63 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.10 Total: -54.34 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.13 Total: -10.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.46 -7.96 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086467325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.492 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds