Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47241 * 2 1 4 4 C 1.40361 * 126.64849 * 265.12852 * 3 2 1 5 5 C 1.35122 * 107.11753 * 180.29863 * 4 3 2 6 6 O 1.33934 * 108.76944 * 359.74912 * 5 4 3 7 7 C 1.34919 * 109.38207 * 359.97438 * 6 5 4 8 8 C 1.46656 * 125.98939 * 180.02562 * 7 6 5 9 9 O 1.21693 * 120.00062 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99556 * 0.02562 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47283 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.84933 * 316.19853 * 12 11 10 14 14 C 1.53781 * 113.69221 * 87.46423 * 12 11 10 15 15 C 1.54049 * 87.08031 * 139.98770 * 14 12 11 16 16 H 1.08992 * 113.69868 * 220.05225 * 15 14 12 17 17 N 1.46506 * 113.61276 * 89.07129 * 15 14 12 18 18 C 1.36931 * 119.99757 * 107.62016 * 17 15 14 19 19 H 1.08000 * 120.00368 * 0.02562 * 18 17 15 20 20 C 1.38817 * 119.99913 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99934 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47051 * 89.99977 * 22 20 18 24 24 H 1.48498 * 109.46981 * 209.99818 * 22 20 18 25 25 H 1.48500 * 109.46961 * 329.99852 * 22 20 18 26 26 C 1.53781 * 113.61503 * 185.00012 * 12 11 10 27 27 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47136 * 299.99831 * 1 2 3 29 29 H 1.09004 * 109.47461 * 60.00069 * 1 2 3 30 30 H 1.08996 * 109.47512 * 239.99821 * 2 1 3 31 31 H 1.09004 * 109.47461 * 119.99930 * 2 1 3 32 32 H 1.08009 * 126.44093 * 0.04555 * 4 3 2 33 33 H 1.08001 * 125.61503 * 179.78276 * 5 4 3 34 34 H 0.97001 * 120.00396 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47315 * 59.99868 * 11 10 8 36 36 H 1.09001 * 109.46863 * 300.00267 * 11 10 8 37 37 H 1.09005 * 113.61471 * 254.54353 * 14 12 11 38 38 H 1.08996 * 113.61178 * 25.35695 * 14 12 11 39 39 H 0.97002 * 119.99888 * 287.62233 * 17 15 14 40 40 H 0.96998 * 119.99784 * 180.02562 * 21 20 18 41 41 H 1.09002 * 113.61445 * 334.48413 * 26 12 11 42 42 H 1.09002 * 113.61408 * 105.30144 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4018 2.1789 -1.1221 5 6 2.7964 3.3900 -0.6714 6 8 2.6819 3.4117 0.6629 7 6 2.2135 2.2212 1.0914 8 6 1.9512 1.8496 2.4856 9 8 1.5274 0.7399 2.7502 10 7 2.1794 2.7372 3.4738 11 6 1.9178 2.3658 4.8667 12 6 2.2569 3.5447 5.7811 13 1 3.1966 4.0292 5.5162 14 6 1.0913 4.5281 5.9793 15 6 1.5223 4.6186 7.4555 16 1 0.6868 4.6456 8.1549 17 7 2.5160 5.6637 7.7137 18 6 2.1531 6.8041 8.3791 19 1 1.1345 6.9330 8.7140 20 6 3.0946 7.7946 8.6233 21 7 4.3361 7.6373 8.2157 22 14 2.5997 9.3501 9.5317 23 1 2.7926 9.1537 10.9909 24 1 3.4415 10.4825 9.0691 25 1 1.1715 9.6504 9.2572 26 6 2.1328 3.2183 7.2787 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3791 1.8536 -2.1518 33 1 3.1461 4.2064 -1.2860 34 1 2.5167 3.6218 3.2629 35 1 2.5339 1.5079 5.1359 36 1 0.8652 2.1077 4.9824 37 1 1.2106 5.4628 5.4314 38 1 0.1098 4.0762 5.8366 39 1 3.4310 5.5478 7.4133 40 1 4.9940 8.3293 8.3867 41 1 1.4359 2.4079 7.4927 42 1 3.0929 3.0941 7.7795 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086467325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -22.258907 kcal Electronic energy + Delta-G solvation = -22701.360718 eV Core-core repulsion = 19261.813627 eV Total energy + Delta-G solvation = -3439.547090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -43.69460 -40.78880 -39.78605 -36.42271 -35.70144 -34.92114 -32.38278 -32.10070 -30.73219 -28.55137 -26.44112 -25.83719 -25.00850 -23.77517 -23.00662 -22.03214 -20.93115 -19.87645 -19.37011 -18.96222 -17.42798 -17.17075 -17.04803 -16.67108 -16.22429 -15.81395 -15.69557 -15.38647 -14.99949 -14.74505 -14.60931 -14.52522 -13.99806 -13.75169 -13.59025 -13.31112 -13.29457 -12.94876 -12.92122 -12.66084 -12.28404 -12.16197 -12.07714 -12.00113 -11.56969 -11.49654 -11.20684 -10.93992 -10.79894 -10.70175 -10.23685 -9.56583 -9.00741 -7.95979 -5.24372 0.02996 1.41447 1.47671 1.48960 1.57403 1.72117 2.08227 2.24463 2.55384 3.36540 3.66405 3.72654 3.75672 3.77058 3.84200 3.93901 4.13255 4.31051 4.38780 4.40222 4.44739 4.50701 4.60566 4.70551 4.73088 4.82775 4.92241 4.97805 5.01717 5.05743 5.09714 5.19125 5.29968 5.33031 5.33652 5.41317 5.47885 5.52991 5.65111 5.87617 6.27754 6.42050 6.99258 7.32636 8.09772 8.32019 9.27408 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.002809 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.252459 B = 9963.797965 C =10687.030630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.089 4.089 4 C -0.232 4.232 5 C 0.009 3.991 6 O -0.176 6.176 7 C -0.118 4.118 8 C 0.596 3.404 9 O -0.549 6.549 10 N -0.711 5.711 11 C 0.140 3.860 12 C -0.104 4.104 13 H 0.079 0.921 14 C -0.155 4.155 15 C 0.144 3.856 16 H 0.062 0.938 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.269 1.269 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.184 0.816 33 H 0.252 0.748 34 H 0.410 0.590 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.108 0.892 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 -13.320 -20.204 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.250 4.250 5 C -0.060 4.060 6 O -0.072 6.072 7 C -0.170 4.170 8 C 0.384 3.616 9 O -0.430 6.430 10 N -0.361 5.361 11 C 0.018 3.982 12 C -0.123 4.123 13 H 0.097 0.903 14 C -0.196 4.196 15 C 0.034 3.966 16 H 0.080 0.920 17 N -0.358 5.358 18 C -0.374 4.374 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.194 1.194 26 C -0.171 4.171 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.201 0.799 33 H 0.267 0.733 34 H 0.246 0.754 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.127 0.873 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.711 -13.722 -19.643 24.632 hybrid contribution 0.635 1.423 0.283 1.583 sum -5.076 -12.299 -19.360 23.492 Atomic orbital electron populations 1.21594 0.94043 1.02397 1.01204 1.20157 0.96622 0.89855 1.03397 1.20994 0.98554 0.97992 0.91661 1.22084 1.07784 0.94352 1.00823 1.25314 0.99884 1.01064 0.79780 1.84082 1.65006 1.33381 1.24725 1.21764 1.13759 0.86686 0.94776 1.16760 0.77820 0.84433 0.82588 1.90814 1.47742 1.21583 1.82873 1.45972 1.66008 1.17225 1.06927 1.21412 1.01414 0.96998 0.78419 1.22497 0.99149 0.95550 0.95117 0.90293 1.23781 0.97825 0.98307 0.99640 1.21430 0.92126 0.88399 0.94629 0.91978 1.42317 1.08841 1.17493 1.67198 1.19677 0.95254 0.95167 1.27322 0.90524 1.25565 0.95772 1.02159 1.03316 1.69813 1.02971 1.35731 1.53506 0.85144 0.77471 0.79113 0.78068 1.21423 1.22268 1.19432 1.23343 1.01684 0.97946 0.94156 0.91065 0.94722 0.91869 0.88793 0.91397 0.79908 0.73261 0.75417 0.91178 0.90732 0.93604 0.88917 0.79383 0.94009 0.87330 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.06 -1.23 5.72 29.85 0.17 -1.06 16 3 C -0.09 -1.90 5.45 -19.74 -0.11 -2.00 16 4 C -0.23 -3.45 10.83 22.07 0.24 -3.21 16 5 C 0.01 0.12 12.08 67.10 0.81 0.93 16 6 O -0.18 -3.82 10.40 -5.12 -0.05 -3.88 16 7 C -0.12 -2.97 7.13 24.07 0.17 -2.79 16 8 C 0.60 16.91 7.79 86.44 0.67 17.59 16 9 O -0.55 -17.80 14.62 -4.33 -0.06 -17.86 16 10 N -0.71 -18.59 5.55 -467.10 -2.59 -21.18 16 11 C 0.14 3.63 5.51 86.38 0.48 4.11 16 12 C -0.10 -3.05 3.63 -10.27 -0.04 -3.08 16 13 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 14 C -0.15 -5.02 7.44 31.21 0.23 -4.79 16 15 C 0.14 5.51 4.58 45.61 0.21 5.72 16 16 H 0.06 2.37 8.10 -2.39 -0.02 2.35 16 17 N -0.72 -35.85 5.31 -320.00 -1.70 -37.55 16 18 C -0.24 -13.37 9.97 84.04 0.84 -12.53 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 22 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.13 -4.03 7.38 31.12 0.23 -3.80 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.03 0.80 7.90 -2.38 -0.02 0.79 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.63 6.74 -2.38 -0.02 1.61 16 32 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.25 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.41 10.12 8.23 -92.71 -0.76 9.36 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.89 7.85 -2.39 -0.02 1.87 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.09 2.57 7.90 -2.39 -0.02 2.55 16 39 H 0.37 19.95 7.90 -92.71 -0.73 19.22 16 40 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -69.32 354.67 2.52 -66.79 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.46 Total: 35.05 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.08 Total: -10.57 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -4.01 Total: -117.44 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.12 Total: -21.73 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -69.32 2.52 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086467325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.535 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds