Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.40356 * 126.64631 * 264.69271 * 3 2 1 5 5 C 1.35134 * 107.11540 * 179.83838 * 4 3 2 6 6 O 1.33929 * 108.76303 * 0.42763 * 5 4 3 7 7 C 1.34913 * 109.38822 * 359.72596 * 6 5 4 8 8 C 1.46656 * 125.99118 * 179.97438 * 7 6 5 9 9 O 1.21690 * 119.99962 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99854 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00163 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47477 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61144 * 274.13691 * 12 11 10 14 14 C 1.53956 * 87.02003 * 220.04659 * 13 12 11 15 15 N 1.46499 * 113.53416 * 270.81154 * 14 13 12 16 16 C 1.36940 * 120.00057 * 252.49156 * 15 14 13 17 17 H 1.08001 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00228 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00212 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47016 * 59.99899 * 20 18 16 22 22 H 1.48498 * 109.47449 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47110 * 300.00155 * 20 18 16 24 24 C 1.53779 * 113.61551 * 176.53064 * 12 11 10 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.07999 * 126.44685 * 359.97010 * 4 3 2 31 31 H 1.07999 * 125.61897 * 180.12213 * 5 4 3 32 32 H 0.97007 * 119.99922 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47393 * 300.00260 * 11 10 8 34 34 H 1.09000 * 109.47155 * 59.99888 * 11 10 8 35 35 H 1.08997 * 112.85287 * 45.32981 * 12 11 10 36 36 H 1.09002 * 113.61340 * 334.56268 * 13 12 11 37 37 H 1.09001 * 113.61841 * 105.46759 * 13 12 11 38 38 H 1.09005 * 113.74313 * 139.94314 * 14 13 12 39 39 H 0.96997 * 120.00020 * 72.50021 * 15 14 13 40 40 H 0.96996 * 120.00610 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.61090 * 254.52337 * 24 12 11 42 42 H 1.08995 * 113.61563 * 25.42728 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4098 2.1760 -1.1213 5 6 2.7915 3.3919 -0.6718 6 8 2.6756 3.4139 0.6623 7 6 2.2140 2.2210 1.0914 8 6 1.9536 1.8487 2.4858 9 8 1.5363 0.7368 2.7510 10 7 2.1765 2.7381 3.4737 11 6 1.9169 2.3661 4.8666 12 6 2.2490 3.5474 5.7804 13 6 3.7301 3.6128 6.1890 14 6 3.2421 4.0205 7.5912 15 7 3.0813 5.4672 7.7568 16 6 3.9724 6.1721 8.5213 17 1 4.7934 5.6614 9.0024 18 6 3.8197 7.5427 8.6786 19 7 2.8182 8.1649 8.0936 20 14 5.0356 8.5044 9.7209 21 1 6.3994 8.3584 9.1517 22 1 4.6542 9.9396 9.7289 23 1 5.0202 7.9798 11.1101 24 6 1.9303 3.2884 7.2624 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.3956 1.8479 -2.1501 31 1 3.1381 4.2094 -1.2866 32 1 2.5088 3.6246 3.2622 33 1 0.8657 2.1019 4.9824 34 1 2.5380 1.5119 5.1363 35 1 1.8566 4.4938 5.4083 36 1 4.2325 2.6457 6.1657 37 1 4.2905 4.3945 5.6763 38 1 3.8066 3.5616 8.4029 39 1 2.3436 5.9257 7.3251 40 1 2.7113 9.1226 8.2038 41 1 1.0398 3.8089 7.6149 42 1 1.9398 2.2327 7.5330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091214638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = -1.874359 kcal Electronic energy + Delta-G solvation = -22697.202791 eV Core-core repulsion = 19258.539641 eV Total energy + Delta-G solvation = -3438.663150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.91773 -39.64215 -38.45198 -35.45711 -34.47007 -33.21025 -31.59867 -30.42657 -29.64765 -27.30481 -25.07374 -24.38255 -23.67167 -22.81187 -21.79623 -21.14365 -19.96047 -18.60361 -18.01474 -17.27146 -16.58462 -16.22326 -16.00981 -15.18816 -14.83380 -14.74603 -14.31809 -14.08970 -13.88046 -13.68313 -13.26326 -13.23942 -12.91278 -12.79762 -12.56475 -12.28674 -11.93360 -11.52728 -11.42097 -11.14692 -11.05654 -10.84243 -10.51433 -10.31525 -10.20722 -9.97070 -9.86804 -9.70165 -9.50785 -9.16205 -8.89775 -8.73530 -7.01549 -5.81807 -3.11031 0.89100 2.11978 2.53624 3.07690 3.19430 3.41656 3.46144 3.47060 4.45150 4.50104 4.54688 4.67416 5.03703 5.04545 5.09190 5.17874 5.21853 5.27063 5.40747 5.44024 5.49602 5.60342 5.66854 5.72437 5.80350 5.84601 5.92789 6.02333 6.08717 6.10514 6.16471 6.19993 6.34555 6.36489 6.56832 6.65757 6.73878 6.88051 7.03205 7.43833 7.67340 8.03204 8.37393 9.47924 10.05426 10.39604 11.40577 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025530 B = 0.002802 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.478259 B = 9989.837241 C =10728.746187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.087 4.087 4 C -0.225 4.225 5 C -0.005 4.005 6 O -0.161 6.161 7 C -0.081 4.081 8 C 0.599 3.401 9 O -0.522 6.522 10 N -0.712 5.712 11 C 0.131 3.869 12 C -0.121 4.121 13 C -0.169 4.169 14 C 0.168 3.832 15 N -0.706 5.706 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.147 4.147 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.210 0.790 32 H 0.407 0.593 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -13.592 -18.308 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.244 4.244 5 C -0.075 4.075 6 O -0.057 6.057 7 C -0.133 4.133 8 C 0.385 3.615 9 O -0.401 6.401 10 N -0.362 5.362 11 C 0.008 3.992 12 C -0.139 4.139 13 C -0.210 4.210 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.187 4.187 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.226 0.774 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.562 -14.033 -17.723 22.750 hybrid contribution 0.608 1.271 -0.139 1.416 sum -1.954 -12.761 -17.862 22.039 Atomic orbital electron populations 1.21636 0.94392 1.01777 1.01890 1.20126 0.96345 0.90153 1.03320 1.20629 0.99603 0.97727 0.91066 1.21727 1.07999 0.94518 1.00186 1.24371 1.02273 0.99989 0.80827 1.84092 1.64882 1.33623 1.23060 1.21969 1.10742 0.85437 0.95117 1.16549 0.78338 0.84829 0.81805 1.90841 1.46557 1.20493 1.82197 1.46004 1.66247 1.16917 1.07080 1.21562 1.01063 0.98019 0.78559 1.22721 0.99015 0.97343 0.94847 1.23929 0.94348 1.00662 1.02098 1.21089 0.93477 0.86045 0.93858 1.42170 1.32749 1.00776 1.58743 1.19246 1.05458 0.90119 1.22592 0.91038 1.24763 0.98530 0.96651 1.00911 1.69647 1.31575 1.09072 1.47809 0.86243 0.80546 0.79091 0.80150 1.21219 1.21676 1.21176 1.23440 1.00688 1.00540 0.94005 0.92214 0.92288 0.93141 0.89234 0.91204 0.82781 0.77376 0.75787 0.91460 0.91212 0.88828 0.91372 0.91473 0.91913 0.78105 0.93372 0.91261 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.99 16 2 C -0.06 -0.64 5.72 -27.88 -0.16 -0.80 16 3 C -0.09 -0.98 5.45 -104.43 -0.57 -1.55 16 4 C -0.23 -1.99 10.83 -39.89 -0.43 -2.42 16 5 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 6 O -0.16 -1.84 10.40 5.00 0.05 -1.79 16 7 C -0.08 -1.02 7.13 -36.80 -0.26 -1.29 16 8 C 0.60 8.43 7.79 -12.86 -0.10 8.33 16 9 O -0.52 -8.33 14.64 5.20 0.08 -8.26 16 10 N -0.71 -9.36 5.55 -61.63 -0.34 -9.70 16 11 C 0.13 1.75 5.50 -4.04 -0.02 1.73 16 12 C -0.12 -1.80 3.62 -89.81 -0.33 -2.12 16 13 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 14 C 0.17 3.25 4.57 -67.03 -0.31 2.94 16 15 N -0.71 -17.33 5.31 -52.55 -0.28 -17.61 16 16 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 25 H 0.06 0.69 7.93 -51.93 -0.41 0.28 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 1.06 6.72 -51.93 -0.35 0.71 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.41 5.01 8.23 -40.82 -0.34 4.67 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.38 9.99 7.90 -40.82 -0.32 9.67 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -31.44 354.73 -7.96 -39.40 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.43 Total: 11.20 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.08 Total: -8.64 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.10 Total: -54.37 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.13 Total: -10.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.44 -7.96 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091214638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.529 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds