Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.40356 * 126.64631 * 264.69271 * 3 2 1 5 5 C 1.35134 * 107.11540 * 179.83838 * 4 3 2 6 6 O 1.33929 * 108.76303 * 0.42763 * 5 4 3 7 7 C 1.34913 * 109.38822 * 359.72596 * 6 5 4 8 8 C 1.46656 * 125.99118 * 179.97438 * 7 6 5 9 9 O 1.21690 * 119.99962 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99854 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00163 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47477 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61144 * 274.13691 * 12 11 10 14 14 C 1.53956 * 87.02003 * 220.04659 * 13 12 11 15 15 N 1.46499 * 113.53416 * 270.81154 * 14 13 12 16 16 C 1.36940 * 120.00057 * 252.49156 * 15 14 13 17 17 H 1.08001 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00228 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00212 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47016 * 59.99899 * 20 18 16 22 22 H 1.48498 * 109.47449 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47110 * 300.00155 * 20 18 16 24 24 C 1.53779 * 113.61551 * 176.53064 * 12 11 10 25 25 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 30 30 H 1.07999 * 126.44685 * 359.97010 * 4 3 2 31 31 H 1.07999 * 125.61897 * 180.12213 * 5 4 3 32 32 H 0.97007 * 119.99922 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47393 * 300.00260 * 11 10 8 34 34 H 1.09000 * 109.47155 * 59.99888 * 11 10 8 35 35 H 1.08997 * 112.85287 * 45.32981 * 12 11 10 36 36 H 1.09002 * 113.61340 * 334.56268 * 13 12 11 37 37 H 1.09001 * 113.61841 * 105.46759 * 13 12 11 38 38 H 1.09005 * 113.74313 * 139.94314 * 14 13 12 39 39 H 0.96997 * 120.00020 * 72.50021 * 15 14 13 40 40 H 0.96996 * 120.00610 * 179.97438 * 19 18 16 41 41 H 1.09002 * 113.61090 * 254.52337 * 24 12 11 42 42 H 1.08995 * 113.61563 * 25.42728 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4098 2.1760 -1.1213 5 6 2.7915 3.3919 -0.6718 6 8 2.6756 3.4139 0.6623 7 6 2.2140 2.2210 1.0914 8 6 1.9536 1.8487 2.4858 9 8 1.5363 0.7368 2.7510 10 7 2.1765 2.7381 3.4737 11 6 1.9169 2.3661 4.8666 12 6 2.2490 3.5474 5.7804 13 6 3.7301 3.6128 6.1890 14 6 3.2421 4.0205 7.5912 15 7 3.0813 5.4672 7.7568 16 6 3.9724 6.1721 8.5213 17 1 4.7934 5.6614 9.0024 18 6 3.8197 7.5427 8.6786 19 7 2.8182 8.1649 8.0936 20 14 5.0356 8.5044 9.7209 21 1 6.3994 8.3584 9.1517 22 1 4.6542 9.9396 9.7289 23 1 5.0202 7.9798 11.1101 24 6 1.9303 3.2884 7.2624 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.3956 1.8479 -2.1501 31 1 3.1381 4.2094 -1.2866 32 1 2.5088 3.6246 3.2622 33 1 0.8657 2.1019 4.9824 34 1 2.5380 1.5119 5.1363 35 1 1.8566 4.4938 5.4083 36 1 4.2325 2.6457 6.1657 37 1 4.2905 4.3945 5.6763 38 1 3.8066 3.5616 8.4029 39 1 2.3436 5.9257 7.3251 40 1 2.7113 9.1226 8.2038 41 1 1.0398 3.8089 7.6149 42 1 1.9398 2.2327 7.5330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091214638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = -22.187158 kcal Electronic energy + Delta-G solvation = -22698.083620 eV Core-core repulsion = 19258.539641 eV Total energy + Delta-G solvation = -3439.543979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.69573 -40.79256 -39.78957 -36.42175 -35.70047 -34.91828 -32.38337 -32.09925 -30.73209 -28.55091 -26.44856 -25.83511 -25.00943 -23.77402 -23.00399 -22.03098 -20.92587 -19.87862 -19.36789 -18.95938 -17.43877 -17.17875 -17.02663 -16.67349 -16.23256 -15.81255 -15.69943 -15.38412 -15.01490 -14.69732 -14.62556 -14.54368 -14.00140 -13.74162 -13.59346 -13.32373 -13.27127 -12.93642 -12.92701 -12.63299 -12.28620 -12.20662 -12.08666 -12.00278 -11.58269 -11.49444 -11.18392 -10.94132 -10.79482 -10.70423 -10.23657 -9.56562 -9.00676 -7.95636 -5.24191 0.03014 1.41423 1.47610 1.50251 1.56349 1.72086 2.08214 2.24418 2.55612 3.36681 3.66532 3.72673 3.75750 3.77092 3.84227 3.94014 4.13417 4.31187 4.38740 4.40118 4.44482 4.50650 4.60654 4.70522 4.73036 4.82716 4.92190 4.97665 5.01655 5.05650 5.09734 5.19259 5.30013 5.33080 5.33492 5.41307 5.47754 5.52911 5.65060 5.87648 6.27903 6.42069 6.99270 7.32783 8.10008 8.32233 9.27530 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025530 B = 0.002802 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.478259 B = 9989.837241 C =10728.746187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.089 4.089 4 C -0.232 4.232 5 C 0.009 3.991 6 O -0.176 6.176 7 C -0.118 4.118 8 C 0.596 3.404 9 O -0.549 6.549 10 N -0.711 5.711 11 C 0.140 3.860 12 C -0.104 4.104 13 C -0.155 4.155 14 C 0.144 3.856 15 N -0.721 5.721 16 C -0.244 4.244 17 H 0.077 0.923 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.132 4.132 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.184 0.816 31 H 0.252 0.748 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.736 -14.551 -19.882 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.250 4.250 5 C -0.060 4.060 6 O -0.072 6.072 7 C -0.170 4.170 8 C 0.384 3.616 9 O -0.430 6.430 10 N -0.361 5.361 11 C 0.018 3.982 12 C -0.123 4.123 13 C -0.196 4.196 14 C 0.034 3.966 15 N -0.359 5.359 16 C -0.376 4.376 17 H 0.095 0.905 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.204 1.204 24 C -0.171 4.171 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.201 0.799 31 H 0.267 0.733 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.824 -15.041 -19.295 24.533 hybrid contribution 0.404 1.499 0.254 1.573 sum -1.419 -13.542 -19.040 23.408 Atomic orbital electron populations 1.21594 0.94069 1.02399 1.01182 1.20160 0.96595 0.89860 1.03422 1.20992 0.98505 0.98045 0.91661 1.22085 1.07810 0.94299 1.00852 1.25317 0.99896 1.01024 0.79806 1.84079 1.65196 1.33199 1.24714 1.21761 1.13795 0.86670 0.94760 1.16760 0.77773 0.84474 0.82589 1.90812 1.47892 1.21451 1.82860 1.45965 1.66203 1.17038 1.06912 1.21410 1.01283 0.97093 0.78463 1.22499 0.97537 0.97394 0.94868 1.23761 0.95282 1.00996 0.99516 1.21421 0.96156 0.83765 0.95227 1.42312 1.32082 1.02836 1.58634 1.19642 1.05509 0.90594 1.21812 0.90545 1.25561 1.00562 0.97782 1.02862 1.69803 1.33567 1.08841 1.49812 0.85216 0.78564 0.77197 0.78811 1.20435 1.22236 1.20358 1.23339 0.98132 1.01584 0.94068 0.94758 0.91051 0.91879 0.91361 0.88784 0.79909 0.73259 0.75419 0.91229 0.90704 0.90309 0.88928 0.93569 0.92020 0.79391 0.93996 0.92272 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.89 71.98 0.71 -1.79 16 2 C -0.06 -1.23 5.72 29.85 0.17 -1.06 16 3 C -0.09 -1.90 5.45 -19.74 -0.11 -2.01 16 4 C -0.23 -3.45 10.83 22.07 0.24 -3.21 16 5 C 0.01 0.12 12.08 67.10 0.81 0.93 16 6 O -0.18 -3.82 10.40 -5.01 -0.05 -3.88 16 7 C -0.12 -2.97 7.13 24.07 0.17 -2.79 16 8 C 0.60 16.92 7.79 86.44 0.67 17.59 16 9 O -0.55 -17.80 14.64 -4.32 -0.06 -17.87 16 10 N -0.71 -18.60 5.55 -467.11 -2.59 -21.19 16 11 C 0.14 3.63 5.50 86.38 0.47 4.11 16 12 C -0.10 -3.04 3.62 -10.27 -0.04 -3.08 16 13 C -0.16 -5.02 7.44 31.18 0.23 -4.79 16 14 C 0.14 5.52 4.57 45.58 0.21 5.73 16 15 N -0.72 -35.88 5.31 -320.16 -1.70 -37.58 16 16 C -0.24 -13.45 9.97 84.03 0.84 -12.61 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 20 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 25 H 0.03 0.80 7.93 -2.39 -0.02 0.78 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.63 6.72 -2.39 -0.02 1.62 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.25 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.41 10.13 8.23 -92.70 -0.76 9.37 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 35 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.57 7.92 -2.39 -0.02 2.55 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.35 8.10 -2.38 -0.02 2.33 16 39 H 0.37 19.96 7.90 -92.71 -0.73 19.23 16 40 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 Total: -1.00 -69.29 354.73 2.52 -66.76 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: -0.46 Total: 35.23 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.08 Total: -10.63 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -4.01 Total: -117.50 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.12 Total: -21.74 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -69.29 2.52 -66.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091214638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.577 kcal (2) G-P(sol) polarization free energy of solvation -69.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds