Wall clock time and date at job start Tue Mar 31 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46770 * 246.54679 * 3 2 1 5 5 C 1.52998 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 4 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48502 * 109.47059 * 89.99815 * 21 19 17 23 23 H 1.48498 * 109.47106 * 209.99770 * 21 19 17 24 24 H 1.48506 * 109.46912 * 330.00086 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 4.44641 * 5.63328 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47093 * 126.55193 * 3 2 1 28 28 H 1.08993 * 109.47144 * 6.54589 * 3 2 1 29 29 H 1.09004 * 109.47307 * 60.00170 * 4 3 2 30 30 H 1.08999 * 109.47615 * 300.00065 * 4 3 2 31 31 H 1.09007 * 109.47352 * 60.00069 * 5 4 3 32 32 H 1.09010 * 109.47442 * 300.00155 * 5 4 3 33 33 H 0.96996 * 120.00059 * 359.97438 * 6 5 4 34 34 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 35 35 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 36 36 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 37 37 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 38 38 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 39 39 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 40 40 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 42 42 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5750 1.3234 5 6 4.6857 0.5751 1.3237 6 7 5.1738 1.1245 2.5910 7 6 6.4989 1.2230 2.8170 8 8 7.2876 0.8562 1.9709 9 6 6.9968 1.7840 4.1097 10 8 6.2145 2.2611 4.9054 11 7 8.3144 1.7601 4.3916 12 6 9.2554 1.0531 3.5122 13 6 10.3740 2.0190 3.1088 14 6 11.0129 2.6089 4.3682 15 6 9.9604 3.3903 5.1580 16 1 9.5490 4.1819 4.5317 17 6 10.5977 3.9970 6.3815 18 1 11.6487 3.8419 6.5761 19 6 9.8379 4.7452 7.2555 20 7 8.5581 4.9340 7.0185 21 14 10.6261 5.4908 8.7761 22 1 11.1402 6.8461 8.4532 23 1 9.6153 5.5900 9.8595 24 1 11.7494 4.6291 9.2243 25 6 8.8372 2.4399 5.5846 26 1 -1.0500 0.0001 -0.0002 27 1 3.0092 0.6128 -0.8255 28 1 3.0099 -1.0201 -0.1171 29 1 2.7927 -0.0371 2.1490 30 1 2.7920 1.5958 1.4406 31 1 5.0492 1.1870 0.4980 32 1 5.0492 -0.4459 1.2067 33 1 4.5434 1.4180 3.2672 34 1 9.6817 0.2015 4.0423 35 1 8.7321 0.7046 2.6218 36 1 11.1293 1.4819 2.5352 37 1 9.9588 2.8232 2.5012 38 1 11.8250 3.2782 4.0846 39 1 11.4065 1.8024 4.9869 40 1 8.0235 5.4607 7.6331 41 1 9.2293 1.7013 6.2838 42 1 8.0395 3.0083 6.0628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118621578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:05 Heat of formation + Delta-G solvation = -15.635053 kcal Electronic energy + Delta-G solvation = -23098.259157 eV Core-core repulsion = 19658.999298 eV Total energy + Delta-G solvation = -3439.259858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50719 -38.39406 -36.90373 -36.49693 -34.41663 -33.22336 -31.76453 -31.50713 -29.73344 -27.41004 -25.51407 -24.94689 -22.89613 -21.87260 -21.78236 -20.15942 -18.76366 -18.44128 -17.27899 -16.59469 -16.23918 -16.15903 -15.50731 -15.15342 -14.91195 -14.56197 -14.00605 -13.99912 -13.75670 -13.35104 -13.19038 -13.11759 -12.74806 -12.58686 -12.08827 -11.87799 -11.78327 -11.54018 -11.39047 -10.98247 -10.70495 -10.58657 -10.44745 -10.43108 -10.27466 -10.05114 -9.88370 -9.28790 -9.21143 -9.11546 -8.52214 -8.41331 -7.82214 -6.02145 -4.10257 1.78915 2.41219 2.52364 2.75782 3.30246 3.37411 3.39982 3.64652 3.92622 4.03549 4.41635 4.61077 4.63011 4.74723 4.85081 5.18263 5.21764 5.28464 5.40557 5.63778 5.68858 5.70221 5.73126 5.77993 5.89249 6.07694 6.26652 6.40020 6.60642 6.62725 6.75756 6.87336 7.00008 7.05211 7.18413 7.23540 7.29603 7.59492 7.83214 7.95481 7.99331 8.16934 8.35421 8.57988 8.93838 9.55281 11.03495 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.003081 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.020860 B = 9085.787987 C =10007.657204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.009 4.009 4 C -0.129 4.129 5 C 0.116 3.884 6 N -0.705 5.705 7 C 0.512 3.488 8 O -0.514 6.514 9 C 0.494 3.506 10 O -0.525 6.525 11 N -0.567 5.567 12 C 0.050 3.950 13 C -0.127 4.127 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.883 5.883 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.108 3.892 26 H 0.216 0.784 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.054 0.946 35 H 0.144 0.856 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -10.607 -12.794 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.046 4.046 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.359 5.359 7 C 0.295 3.705 8 O -0.392 6.392 9 C 0.275 3.725 10 O -0.403 6.403 11 N -0.298 5.298 12 C -0.072 4.072 13 C -0.166 4.166 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.557 4.557 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.521 5.521 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.012 4.012 26 H 0.233 0.767 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.229 -10.524 -12.873 19.522 hybrid contribution -0.032 0.614 1.208 1.356 sum -10.261 -9.911 -11.665 18.428 Atomic orbital electron populations 1.24937 0.96021 1.01097 1.00547 1.23059 0.94512 1.00455 1.00682 1.18602 0.84844 1.02857 0.98273 1.21759 0.94180 1.02934 0.97825 1.21437 0.93292 0.99853 0.86111 1.45816 1.07031 1.63365 1.19647 1.20784 0.82773 0.78343 0.88599 1.90302 1.53013 1.48832 1.47062 1.19753 0.84143 0.82053 0.86546 1.90759 1.54741 1.46137 1.48618 1.48438 1.04846 1.49870 1.26673 1.23081 0.92354 0.94325 0.97420 1.21854 0.97184 0.98813 0.98706 1.21665 0.99056 0.99171 0.95205 1.18975 0.90912 0.92755 0.95234 0.95279 1.21098 0.95661 1.31677 1.07262 0.92240 1.25063 0.94903 0.95986 0.98153 1.69868 1.05695 1.39375 1.37138 0.86565 0.79048 0.79567 0.82661 1.20664 1.21167 1.19887 1.22487 1.00773 0.94378 0.83557 0.76669 0.89039 0.89081 0.90511 0.90421 0.90696 0.90735 0.74976 0.92752 0.83999 0.92278 0.92346 0.93073 0.93254 0.92631 0.93384 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.19 -1.56 13.34 -37.12 -0.50 -2.06 16 3 C -0.01 -0.06 5.70 -29.52 -0.17 -0.22 16 4 C -0.13 -0.91 5.28 -26.73 -0.14 -1.05 16 5 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 6 N -0.71 -8.70 5.55 -60.72 -0.34 -9.04 16 7 C 0.51 8.31 7.78 -11.58 -0.09 8.22 16 8 O -0.51 -8.64 13.10 5.50 0.07 -8.57 16 9 C 0.49 9.96 7.74 -11.59 -0.09 9.87 16 10 O -0.53 -11.93 15.95 5.49 0.09 -11.84 16 11 N -0.57 -11.89 2.97 -173.27 -0.51 -12.40 16 12 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 13 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 14 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 15 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.52 -14.08 8.57 -34.44 -0.30 -14.38 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.88 -25.51 11.38 55.43 0.63 -24.88 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 26 H 0.22 0.97 7.80 -54.09 -0.42 0.55 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.41 4.84 7.96 -40.82 -0.33 4.51 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.14 2.45 3.78 -56.75 -0.21 2.24 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -31.64 350.15 -7.45 -39.09 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.27 Total: 4.86 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.38 Total: 1.32 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.22 Total: -46.32 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.16 Total: -20.41 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.64 -7.45 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118621578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.454 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds