Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46770 * 246.54679 * 3 2 1 5 5 C 1.52998 * 109.46994 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47360 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00166 * 180.02562 * 6 5 4 8 8 O 1.21350 * 119.99528 * 359.97438 * 7 6 5 9 9 C 1.49446 * 120.00084 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99803 * 353.37756 * 9 7 6 11 11 N 1.34768 * 120.00057 * 173.37736 * 9 7 6 12 12 C 1.46923 * 120.63140 * 353.06161 * 11 9 7 13 13 C 1.53197 * 108.77603 * 126.41596 * 12 11 9 14 14 C 1.53036 * 109.34037 * 54.62030 * 13 12 11 15 15 C 1.53043 * 109.53781 * 298.68543 * 14 13 12 16 16 H 1.09000 * 109.49772 * 301.34791 * 15 14 13 17 17 C 1.50699 * 109.49861 * 181.28187 * 15 14 13 18 18 H 1.08009 * 119.99826 * 0.06421 * 17 15 14 19 19 C 1.37874 * 120.00391 * 180.34183 * 17 15 14 20 20 N 1.31511 * 119.99935 * 359.72505 * 19 17 15 21 21 Si 1.86803 * 120.00371 * 179.72468 * 19 17 15 22 22 H 1.48502 * 109.47059 * 89.99815 * 21 19 17 23 23 H 1.48498 * 109.47106 * 209.99770 * 21 19 17 24 24 H 1.48506 * 109.46912 * 330.00086 * 21 19 17 25 25 C 1.46927 * 120.63303 * 173.08900 * 11 9 7 26 26 H 4.44641 * 5.63328 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47093 * 126.55193 * 3 2 1 28 28 H 1.08993 * 109.47144 * 6.54589 * 3 2 1 29 29 H 1.09004 * 109.47307 * 60.00170 * 4 3 2 30 30 H 1.08999 * 109.47615 * 300.00065 * 4 3 2 31 31 H 1.09007 * 109.47352 * 60.00069 * 5 4 3 32 32 H 1.09010 * 109.47442 * 300.00155 * 5 4 3 33 33 H 0.96996 * 120.00059 * 359.97438 * 6 5 4 34 34 H 1.08998 * 109.59171 * 246.19792 * 12 11 9 35 35 H 1.09003 * 109.58922 * 6.48999 * 12 11 9 36 36 H 1.08995 * 109.50150 * 174.58993 * 13 12 11 37 37 H 1.09009 * 109.49617 * 294.68452 * 13 12 11 38 38 H 1.08997 * 109.49188 * 178.64856 * 14 13 12 39 39 H 1.09001 * 109.43006 * 58.68768 * 14 13 12 40 40 H 0.97000 * 120.00590 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.59192 * 113.79627 * 25 11 9 42 42 H 1.08998 * 109.70190 * 353.44355 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5750 1.3234 5 6 4.6857 0.5751 1.3237 6 7 5.1738 1.1245 2.5910 7 6 6.4989 1.2230 2.8170 8 8 7.2876 0.8562 1.9709 9 6 6.9968 1.7840 4.1097 10 8 6.2145 2.2611 4.9054 11 7 8.3144 1.7601 4.3916 12 6 9.2554 1.0531 3.5122 13 6 10.3740 2.0190 3.1088 14 6 11.0129 2.6089 4.3682 15 6 9.9604 3.3903 5.1580 16 1 9.5490 4.1819 4.5317 17 6 10.5977 3.9970 6.3815 18 1 11.6487 3.8419 6.5761 19 6 9.8379 4.7452 7.2555 20 7 8.5581 4.9340 7.0185 21 14 10.6261 5.4908 8.7761 22 1 11.1402 6.8461 8.4532 23 1 9.6153 5.5900 9.8595 24 1 11.7494 4.6291 9.2243 25 6 8.8372 2.4399 5.5846 26 1 -1.0500 0.0001 -0.0002 27 1 3.0092 0.6128 -0.8255 28 1 3.0099 -1.0201 -0.1171 29 1 2.7927 -0.0371 2.1490 30 1 2.7920 1.5958 1.4406 31 1 5.0492 1.1870 0.4980 32 1 5.0492 -0.4459 1.2067 33 1 4.5434 1.4180 3.2672 34 1 9.6817 0.2015 4.0423 35 1 8.7321 0.7046 2.6218 36 1 11.1293 1.4819 2.5352 37 1 9.9588 2.8232 2.5012 38 1 11.8250 3.2782 4.0846 39 1 11.4065 1.8024 4.9869 40 1 8.0235 5.4607 7.6331 41 1 9.2293 1.7013 6.2838 42 1 8.0395 3.0083 6.0628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118621578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -36.160958 kcal Electronic energy + Delta-G solvation = -23099.149227 eV Core-core repulsion = 19658.999298 eV Total energy + Delta-G solvation = -3440.149928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93018 -39.84129 -38.52936 -37.38356 -35.46762 -34.95376 -33.45406 -32.26895 -31.56326 -28.42359 -27.19465 -26.57004 -24.16520 -23.48306 -22.77112 -21.62021 -20.39858 -18.98876 -18.87496 -18.17445 -17.85314 -17.19844 -16.83392 -16.49196 -16.31485 -16.05251 -15.49137 -15.27283 -14.92700 -14.60751 -14.51855 -14.44728 -14.02762 -13.84685 -13.73179 -13.43302 -13.00632 -12.88338 -12.52884 -12.47454 -12.29199 -12.21567 -12.15643 -11.70647 -11.60991 -11.19604 -11.13850 -10.97776 -10.96117 -10.54662 -10.32625 -9.98021 -9.54048 -8.12533 -6.28974 0.36378 1.34499 1.42362 1.42944 1.53193 1.91254 1.95081 2.16636 2.41247 2.61121 3.15817 3.33158 3.47505 4.03528 4.06474 4.16196 4.20129 4.25094 4.36136 4.58489 4.62495 4.64494 4.72564 4.77340 4.82645 4.85936 5.06330 5.16200 5.16243 5.20995 5.21853 5.24588 5.29713 5.41255 5.54707 5.57520 5.84287 5.93865 6.01274 6.29740 6.45999 6.73737 6.75432 6.83670 6.99688 7.40871 8.91579 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.003081 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.020860 B = 9085.787987 C =10007.657204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C -0.007 4.007 4 C -0.119 4.119 5 C 0.115 3.885 6 N -0.688 5.688 7 C 0.521 3.479 8 O -0.519 6.519 9 C 0.484 3.516 10 O -0.560 6.560 11 N -0.575 5.575 12 C 0.049 3.951 13 C -0.120 4.120 14 C -0.107 4.107 15 C 0.038 3.962 16 H -0.012 1.012 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.121 3.879 26 H 0.239 0.761 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.417 0.583 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -12.000 -14.028 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.215 4.215 3 C -0.044 4.044 4 C -0.157 4.157 5 C -0.006 4.006 6 N -0.340 5.340 7 C 0.302 3.698 8 O -0.397 6.397 9 C 0.266 3.734 10 O -0.440 6.440 11 N -0.306 5.306 12 C -0.071 4.071 13 C -0.158 4.158 14 C -0.145 4.145 15 C 0.019 3.981 16 H 0.006 0.994 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.785 3.215 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.001 4.001 26 H 0.255 0.745 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.254 0.746 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.918 -11.943 -14.146 21.002 hybrid contribution -0.220 1.042 1.550 1.881 sum -10.138 -10.900 -12.596 19.500 Atomic orbital electron populations 1.25700 0.97057 1.00613 0.99895 1.23642 0.95536 1.01028 1.01341 1.18657 0.83964 1.03859 0.97946 1.21656 0.92617 1.02886 0.98522 1.21696 0.94442 1.00320 0.84192 1.45841 1.05508 1.61787 1.20873 1.19883 0.84104 0.78975 0.86794 1.90274 1.53390 1.49619 1.46465 1.20544 0.83619 0.81369 0.87834 1.90731 1.55552 1.47534 1.50182 1.48467 1.05970 1.49957 1.26213 1.23332 0.91936 0.94349 0.97482 1.21823 0.97923 0.98729 0.97368 1.21562 0.97834 0.98950 0.96115 1.18913 0.92211 0.92358 0.94595 0.99355 1.21490 0.95932 1.31839 1.08061 0.91902 1.25892 0.95284 0.96526 1.01211 1.70046 1.07096 1.40107 1.38176 0.85527 0.78268 0.78854 0.78852 1.20138 1.21157 1.18731 1.21942 0.99309 0.93983 0.84886 0.74486 0.87983 0.87690 0.90389 0.90804 0.90116 0.89473 0.74578 0.91127 0.82649 0.88323 0.93538 0.92802 0.92444 0.92943 0.93816 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.01 19.25 74.32 1.43 -1.58 16 2 C -0.22 -3.28 13.34 31.13 0.42 -2.86 16 3 C -0.01 -0.08 5.70 28.79 0.16 0.09 16 4 C -0.12 -1.45 5.28 30.59 0.16 -1.29 16 5 C 0.12 1.80 5.67 86.38 0.49 2.29 16 6 N -0.69 -16.03 5.55 -464.39 -2.58 -18.61 16 7 C 0.52 16.36 7.78 87.27 0.68 17.04 16 8 O -0.52 -16.36 13.10 -3.25 -0.04 -16.40 16 9 C 0.48 19.78 7.74 87.27 0.68 20.46 16 10 O -0.56 -26.40 15.95 -3.27 -0.05 -26.46 16 11 N -0.57 -24.34 2.97 -820.48 -2.44 -26.78 16 12 C 0.05 1.68 6.27 86.36 0.54 2.22 16 13 C -0.12 -4.09 6.08 30.67 0.19 -3.90 16 14 C -0.11 -4.35 5.11 30.62 0.16 -4.20 16 15 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 16 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 17 C -0.53 -29.58 8.57 25.60 0.22 -29.36 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.58 5.30 84.65 0.45 1.02 16 20 N -0.92 -54.93 11.38 21.45 0.24 -54.68 16 21 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.12 6.09 5.38 86.36 0.46 6.56 16 26 H 0.24 1.73 7.80 -4.42 -0.03 1.69 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.42 9.42 7.96 -92.71 -0.74 8.68 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.16 5.01 3.78 -78.73 -0.30 4.71 16 36 H 0.10 2.61 8.14 -2.39 -0.02 2.60 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.08 4.98 5.17 -2.39 -0.01 4.96 16 Total: -1.00 -70.53 350.15 3.16 -67.37 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.01 Total: 21.05 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.01 Total: 8.43 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -4.77 Total: -100.07 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.09 Total: -42.86 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.53 3.16 -67.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118621578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.211 kcal (2) G-P(sol) polarization free energy of solvation -70.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds