Wall clock time and date at job start Tue Mar 31 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 C 1.52996 * 109.47107 * 240.00473 * 2 1 3 5 5 C 1.50705 * 109.47314 * 59.99723 * 4 2 1 6 6 H 1.08004 * 119.99764 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99987 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00132 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47082 * 59.99913 * 9 7 5 11 11 H 1.48497 * 109.46800 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46879 * 299.99732 * 9 7 5 13 13 C 1.53000 * 109.47287 * 120.00441 * 2 1 3 14 14 O 1.45201 * 109.47017 * 299.99827 * 13 2 1 15 15 C 1.34870 * 117.00122 * 179.97438 * 14 13 2 16 16 O 1.21612 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.46586 * 120.00399 * 179.97438 * 15 14 13 18 18 C 1.36636 * 126.85742 * 180.02562 * 17 15 14 19 19 N 1.33129 * 107.78814 * 180.22208 * 18 17 15 20 20 C 1.31390 * 109.78766 * 359.72640 * 19 18 17 21 21 N 1.34240 * 108.99517 * 0.18632 * 20 19 18 22 22 C 1.46995 * 111.34060 * 180.02562 * 21 20 19 23 23 C 1.54396 * 105.48634 * 342.95783 * 22 21 20 24 24 C 1.51656 * 141.04893 * 179.87182 * 20 19 18 25 25 H 1.09005 * 109.47071 * 299.99913 * 1 2 3 26 26 H 1.09007 * 109.47383 * 59.99335 * 1 2 3 27 27 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47257 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47648 * 300.00796 * 3 2 1 30 30 H 1.09005 * 109.47067 * 60.00084 * 3 2 1 31 31 H 1.09002 * 109.47193 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47489 * 299.99746 * 4 2 1 33 33 H 0.96998 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46940 * 180.02562 * 13 2 1 35 35 H 1.08994 * 109.47370 * 59.99771 * 13 2 1 36 36 H 1.08006 * 126.10599 * 0.02562 * 18 17 15 37 37 H 1.09002 * 110.24061 * 223.96040 * 22 21 20 38 38 H 1.09001 * 110.24846 * 101.96246 * 22 21 20 39 39 H 1.08995 * 110.98716 * 267.52450 * 23 22 21 40 40 H 1.09002 * 110.98210 * 143.72135 * 23 22 21 41 41 H 1.09001 * 110.47373 * 315.57244 * 24 20 19 42 42 H 1.08996 * 110.48160 * 78.06801 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9163 0.8672 -2.3806 7 6 1.8702 -0.4820 -3.7320 8 7 2.6264 -1.5512 -3.8528 9 14 1.2480 0.3992 -5.2572 10 1 1.7440 1.7988 -5.2572 11 1 1.7419 -0.3016 -6.4697 12 1 -0.2370 0.4002 -5.2570 13 6 2.0400 -0.7213 1.2492 14 8 1.5560 -0.0369 2.4348 15 6 1.9180 -0.5498 3.6285 16 8 2.6196 -1.5419 3.6764 17 6 1.4667 0.0894 4.8681 18 6 1.7480 -0.3083 6.1447 19 7 1.1444 0.5378 6.9766 20 6 0.5004 1.4539 6.2893 21 7 0.6707 1.2173 4.9789 22 6 -0.0305 2.2160 4.1594 23 6 -1.0425 2.8919 5.1096 24 6 -0.3707 2.6799 6.4849 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6767 -1.7488 -1.2494 33 1 2.8601 -1.8830 -4.7338 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -1.7489 1.2492 36 1 2.3497 -1.1592 6.4283 37 1 -0.5533 1.7287 3.3364 38 1 0.6759 2.9520 3.7754 39 1 -2.0108 2.3933 5.0673 40 1 -1.1416 3.9536 4.8830 41 1 -1.1224 2.4949 7.2523 42 1 0.2396 3.5430 6.7503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122976472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:21 Heat of formation + Delta-G solvation = -34.478813 kcal Electronic energy + Delta-G solvation = -23582.871443 eV Core-core repulsion = 20142.794458 eV Total energy + Delta-G solvation = -3440.076985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.79555 -40.00051 -37.33405 -36.64432 -35.40473 -32.46832 -32.23184 -29.31700 -28.01082 -27.26522 -26.51445 -26.46766 -23.78165 -22.59007 -22.53515 -20.59398 -20.13898 -18.38974 -17.71640 -17.05525 -16.56651 -16.19680 -16.05691 -15.22902 -14.62239 -14.39001 -14.33457 -14.19434 -13.69309 -13.62780 -13.49408 -13.14155 -12.68633 -12.43135 -12.42383 -12.10937 -12.02654 -11.57329 -11.35589 -11.02411 -10.91554 -10.75790 -10.67964 -10.45491 -10.36822 -10.33306 -10.21938 -9.93649 -9.81824 -9.29336 -9.01890 -8.72871 -8.41206 -6.05292 -4.07108 1.00627 2.27380 2.52545 2.79165 3.08941 3.28712 3.34258 3.35376 3.44476 3.97121 4.22348 4.34941 4.40428 4.68911 4.98877 5.05633 5.13214 5.16502 5.24803 5.29989 5.36434 5.41954 5.44075 5.46618 5.73176 5.82350 5.94803 6.10332 6.26978 6.35802 6.38205 6.51209 6.60617 6.61971 6.69660 7.01067 7.01890 7.04744 7.54977 7.65088 7.66558 7.86966 7.92648 8.33690 8.96785 9.56161 11.06285 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.003462 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.241904 B = 8085.766544 C = 8905.191496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.058 4.058 3 C -0.124 4.124 4 C 0.035 3.965 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.080 3.920 14 O -0.352 6.352 15 C 0.536 3.464 16 O -0.501 6.501 17 C -0.052 4.052 18 C 0.081 3.919 19 N -0.487 5.487 20 C 0.214 3.786 21 N -0.448 5.448 22 C 0.097 3.903 23 C -0.130 4.130 24 C -0.044 4.044 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.191 0.809 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 9.995 18.536 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.007 3.993 14 O -0.268 6.268 15 C 0.380 3.620 16 O -0.389 6.389 17 C -0.165 4.165 18 C -0.074 4.074 19 N -0.206 5.206 20 C -0.048 4.048 21 N -0.131 5.131 22 C -0.023 4.023 23 C -0.168 4.168 24 C -0.083 4.083 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.208 0.792 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.961 9.548 18.896 22.287 hybrid contribution -0.053 0.127 -1.957 1.962 sum -7.014 9.675 16.939 20.730 Atomic orbital electron populations 1.21705 0.94882 1.00993 1.00549 1.20824 0.96072 0.96190 0.92734 1.21704 1.00144 0.95721 1.00575 1.19121 0.96439 0.95314 0.89298 1.21091 1.31440 1.12195 0.90294 0.92176 1.25013 0.95242 0.95067 0.99120 1.69952 1.36772 1.22967 1.23684 0.86673 0.79163 0.79764 0.82500 1.20254 1.21334 1.20261 1.23561 0.99111 0.96023 0.80567 1.86559 1.69674 1.55886 1.14692 1.19596 0.77606 0.81729 0.83105 1.90905 1.35593 1.24682 1.87710 1.19992 1.07933 0.94030 0.94521 1.22675 0.99577 0.99425 0.85733 1.69858 1.13142 1.04475 1.33143 1.24595 1.00681 0.98585 0.80965 1.46452 1.36101 1.20275 1.10258 1.22602 0.95195 0.89731 0.94813 1.22804 0.98546 1.02844 0.92620 1.20795 0.96957 0.91654 0.98888 0.94654 0.91469 0.93675 0.93685 0.91481 0.94606 0.96284 0.96284 0.92884 0.91397 0.91394 0.79178 0.87903 0.88401 0.89092 0.87556 0.87952 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.08 37.16 0.30 -1.96 16 2 C -0.06 -1.14 0.61 -154.51 -0.09 -1.24 16 3 C -0.12 -2.27 8.08 37.16 0.30 -1.97 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.08 1.48 4.33 37.16 0.16 1.64 16 14 O -0.35 -5.88 8.89 -40.96 -0.36 -6.25 16 15 C 0.54 8.93 7.93 34.10 0.27 9.20 16 16 O -0.50 -9.44 16.70 -19.35 -0.32 -9.77 16 17 C -0.05 -0.75 7.14 -82.06 -0.59 -1.34 16 18 C 0.08 1.10 11.65 -17.57 -0.20 0.89 16 19 N -0.49 -6.54 11.21 -10.27 -0.12 -6.65 16 20 C 0.21 2.36 8.56 -154.92 -1.33 1.03 16 21 N -0.45 -5.26 3.64 -108.30 -0.39 -5.66 16 22 C 0.10 0.78 7.78 -3.04 -0.02 0.76 16 23 C -0.13 -0.58 7.18 -25.20 -0.18 -0.76 16 24 C -0.04 -0.25 6.86 -26.61 -0.18 -0.44 16 25 H 0.03 0.55 7.68 -51.93 -0.40 0.15 16 26 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 30 H 0.03 0.56 7.68 -51.93 -0.40 0.17 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.19 2.23 8.06 -52.48 -0.42 1.81 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -32.65 348.27 -8.69 -41.33 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.41 Total: -2.98 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.04 Total: -5.73 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.23 Total: -37.82 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.69 Total: -16.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.65 -8.69 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122976472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.855 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds