Wall clock time and date at job start Tue Mar 31 2020 07:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 C 1.52996 * 109.47107 * 240.00473 * 2 1 3 5 5 C 1.50705 * 109.47314 * 59.99723 * 4 2 1 6 6 H 1.08004 * 119.99764 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99987 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00132 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47082 * 59.99913 * 9 7 5 11 11 H 1.48497 * 109.46800 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46879 * 299.99732 * 9 7 5 13 13 C 1.53000 * 109.47287 * 120.00441 * 2 1 3 14 14 O 1.45201 * 109.47017 * 299.99827 * 13 2 1 15 15 C 1.34870 * 117.00122 * 179.97438 * 14 13 2 16 16 O 1.21612 * 119.99666 * 0.02562 * 15 14 13 17 17 C 1.46586 * 120.00399 * 179.97438 * 15 14 13 18 18 C 1.36636 * 126.85742 * 180.02562 * 17 15 14 19 19 N 1.33129 * 107.78814 * 180.22208 * 18 17 15 20 20 C 1.31390 * 109.78766 * 359.72640 * 19 18 17 21 21 N 1.34240 * 108.99517 * 0.18632 * 20 19 18 22 22 C 1.46995 * 111.34060 * 180.02562 * 21 20 19 23 23 C 1.54396 * 105.48634 * 342.95783 * 22 21 20 24 24 C 1.51656 * 141.04893 * 179.87182 * 20 19 18 25 25 H 1.09005 * 109.47071 * 299.99913 * 1 2 3 26 26 H 1.09007 * 109.47383 * 59.99335 * 1 2 3 27 27 H 1.09002 * 109.47402 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47257 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47648 * 300.00796 * 3 2 1 30 30 H 1.09005 * 109.47067 * 60.00084 * 3 2 1 31 31 H 1.09002 * 109.47193 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47489 * 299.99746 * 4 2 1 33 33 H 0.96998 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46940 * 180.02562 * 13 2 1 35 35 H 1.08994 * 109.47370 * 59.99771 * 13 2 1 36 36 H 1.08006 * 126.10599 * 0.02562 * 18 17 15 37 37 H 1.09002 * 110.24061 * 223.96040 * 22 21 20 38 38 H 1.09001 * 110.24846 * 101.96246 * 22 21 20 39 39 H 1.08995 * 110.98716 * 267.52450 * 23 22 21 40 40 H 1.09002 * 110.98210 * 143.72135 * 23 22 21 41 41 H 1.09001 * 110.47373 * 315.57244 * 24 20 19 42 42 H 1.08996 * 110.48160 * 78.06801 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9163 0.8672 -2.3806 7 6 1.8702 -0.4820 -3.7320 8 7 2.6264 -1.5512 -3.8528 9 14 1.2480 0.3992 -5.2572 10 1 1.7440 1.7988 -5.2572 11 1 1.7419 -0.3016 -6.4697 12 1 -0.2370 0.4002 -5.2570 13 6 2.0400 -0.7213 1.2492 14 8 1.5560 -0.0369 2.4348 15 6 1.9180 -0.5498 3.6285 16 8 2.6196 -1.5419 3.6764 17 6 1.4667 0.0894 4.8681 18 6 1.7480 -0.3083 6.1447 19 7 1.1444 0.5378 6.9766 20 6 0.5004 1.4539 6.2893 21 7 0.6707 1.2173 4.9789 22 6 -0.0305 2.2160 4.1594 23 6 -1.0425 2.8919 5.1096 24 6 -0.3707 2.6799 6.4849 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6767 -1.7488 -1.2494 33 1 2.8601 -1.8830 -4.7338 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -1.7489 1.2492 36 1 2.3497 -1.1592 6.4283 37 1 -0.5533 1.7287 3.3364 38 1 0.6759 2.9520 3.7754 39 1 -2.0108 2.3933 5.0673 40 1 -1.1416 3.9536 4.8830 41 1 -1.1224 2.4949 7.2523 42 1 0.2396 3.5430 6.7503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122976472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:20 Heat of formation + Delta-G solvation = -52.414851 kcal Electronic energy + Delta-G solvation = -23583.649208 eV Core-core repulsion = 20142.794458 eV Total energy + Delta-G solvation = -3440.854750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.68271 -41.37249 -38.82077 -37.44664 -36.88851 -34.44212 -33.13278 -30.21441 -29.34465 -28.61462 -28.01843 -27.88918 -25.39577 -24.10543 -23.14716 -21.45428 -21.20159 -19.98560 -18.87417 -18.39271 -17.95874 -17.72292 -17.25068 -16.53748 -16.20056 -15.46623 -15.38371 -15.12598 -14.90923 -14.86699 -14.56353 -14.17812 -14.04939 -14.02936 -13.81601 -13.22449 -12.99961 -12.79359 -12.69149 -12.47755 -12.36256 -12.31836 -12.07763 -11.99544 -11.97190 -11.94638 -11.44678 -11.32330 -11.07211 -10.94448 -10.79679 -10.53568 -9.69011 -8.16942 -6.25438 -0.07300 1.33815 1.42624 1.44594 1.51087 1.51992 1.60032 1.96940 2.43069 2.77178 3.17736 3.33487 3.58703 3.76992 3.85507 3.86585 3.96479 4.15179 4.21085 4.30148 4.46281 4.50691 4.52746 4.57357 4.67846 4.84054 4.92468 4.95300 5.01911 5.06664 5.07565 5.14692 5.24109 5.36741 5.41287 5.41580 5.45263 5.49108 5.70161 5.80535 5.84593 6.24633 6.49612 6.76594 6.88163 7.42563 8.95617 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.003462 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.241904 B = 8085.766544 C = 8905.191496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 C -0.117 4.117 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.074 0.926 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.961 3.039 10 H -0.265 1.265 11 H -0.291 1.291 12 H -0.265 1.265 13 C 0.090 3.910 14 O -0.342 6.342 15 C 0.538 3.462 16 O -0.532 6.532 17 C -0.083 4.083 18 C 0.082 3.918 19 N -0.517 5.517 20 C 0.224 3.776 21 N -0.453 5.453 22 C 0.082 3.918 23 C -0.113 4.113 24 C -0.042 4.042 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.065 0.935 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.197 0.803 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 13.200 19.545 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.053 4.053 3 C -0.174 4.174 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.190 1.190 13 C 0.016 3.984 14 O -0.258 6.258 15 C 0.384 3.616 16 O -0.423 6.423 17 C -0.196 4.196 18 C -0.073 4.073 19 N -0.237 5.237 20 C -0.039 4.039 21 N -0.135 5.135 22 C -0.037 4.037 23 C -0.151 4.151 24 C -0.081 4.081 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.159 0.841 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.214 12.791 19.908 25.394 hybrid contribution 0.631 -0.852 -2.149 2.396 sum -8.583 11.939 17.759 23.057 Atomic orbital electron populations 1.21629 0.93302 1.00845 1.01636 1.20633 0.97238 0.96601 0.90842 1.21628 0.99628 0.94512 1.01649 1.18979 0.94494 0.94333 0.91882 1.21495 1.30802 1.12283 0.90808 0.90791 1.25956 0.95522 0.95816 1.02752 1.70111 1.38581 1.24910 1.24322 0.85560 0.79021 0.78768 0.78084 1.19011 1.21663 1.19017 1.23225 0.98421 0.95535 0.81215 1.86532 1.69524 1.55399 1.14336 1.19957 0.76914 0.81349 0.83393 1.90883 1.37217 1.26186 1.87996 1.19733 1.10421 0.96119 0.93322 1.22915 0.99118 0.99568 0.85747 1.69886 1.14505 1.05583 1.33693 1.25717 0.99047 0.98617 0.80500 1.46744 1.35599 1.19831 1.11333 1.23022 0.96037 0.89162 0.95464 1.22886 0.97395 1.04530 0.90273 1.21155 0.96863 0.89762 1.00312 0.91620 0.92158 0.94513 0.94522 0.92169 0.91592 0.99284 0.99283 0.93044 0.92403 0.92401 0.78623 0.88558 0.87501 0.88339 0.84140 0.86050 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.08 71.98 0.58 -3.54 16 2 C -0.05 -2.09 0.61 -52.18 -0.03 -2.12 16 3 C -0.12 -4.13 8.08 71.98 0.58 -3.55 16 4 C 0.04 2.05 4.04 29.85 0.12 2.17 16 5 C -0.52 -27.48 7.65 25.60 0.20 -27.28 16 6 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -56.63 13.29 21.45 0.28 -56.35 16 9 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 C 0.09 3.38 4.33 71.98 0.31 3.70 16 14 O -0.34 -11.31 8.89 -57.84 -0.51 -11.82 16 15 C 0.54 18.15 7.93 70.00 0.56 18.71 16 16 O -0.53 -20.83 16.70 19.47 0.33 -20.51 16 17 C -0.08 -2.38 7.14 39.89 0.28 -2.10 16 18 C 0.08 2.24 11.65 84.12 0.98 3.22 16 19 N -0.52 -13.32 11.21 -186.42 -2.09 -15.41 16 20 C 0.22 4.41 8.56 138.43 1.19 5.59 16 21 N -0.45 -9.79 3.64 -496.54 -1.81 -11.60 16 22 C 0.08 1.06 7.78 86.76 0.68 1.74 16 23 C -0.11 -0.47 7.18 31.59 0.23 -0.24 16 24 C -0.04 -0.31 6.86 30.67 0.21 -0.09 16 25 H 0.06 1.91 7.68 -2.38 -0.02 1.89 16 26 H 0.06 2.20 6.62 -2.38 -0.02 2.19 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 2.20 6.62 -2.39 -0.02 2.19 16 30 H 0.07 1.92 7.68 -2.38 -0.02 1.90 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.14 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 42 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -73.28 348.27 5.57 -67.71 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.01 Total: 6.52 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 6.34 Total: -3.51 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.61 Total: -83.36 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.19 Total: -32.32 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -73.28 5.57 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122976472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.293 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds