Wall clock time and date at job start Tue Mar 31 2020 07:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 C 1.53001 * 109.46748 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46999 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00223 * 264.40192 * 5 4 3 7 7 H 1.07999 * 120.00648 * 190.59219 * 6 5 4 8 8 C 1.38811 * 119.99798 * 10.58916 * 6 5 4 9 9 N 1.31619 * 119.99975 * 20.29628 * 8 6 5 10 10 Si 1.86798 * 120.00187 * 200.28791 * 8 6 5 11 11 H 1.48503 * 109.47085 * 84.97623 * 10 8 6 12 12 H 1.48497 * 109.47558 * 204.97946 * 10 8 6 13 13 H 1.48505 * 109.47273 * 324.98346 * 10 8 6 14 14 C 1.46507 * 119.99995 * 84.40331 * 5 4 3 15 15 C 1.50700 * 109.46873 * 269.99677 * 14 5 4 16 16 C 1.38362 * 119.45205 * 95.00038 * 15 14 5 17 17 C 1.38343 * 119.31071 * 180.02562 * 16 15 14 18 18 C 1.40076 * 118.28109 * 0.27873 * 17 16 15 19 19 C 1.47720 * 120.56634 * 179.70225 * 18 17 16 20 20 O 1.21479 * 119.99953 * 0.02562 * 19 18 17 21 21 O 1.34702 * 120.00534 * 179.97438 * 19 18 17 22 22 C 1.45204 * 117.00546 * 180.02562 * 21 19 18 23 23 C 1.39576 * 118.87142 * 359.45463 * 18 17 16 24 24 N 1.31680 * 120.55838 * 0.55474 * 23 18 17 25 25 H 1.09000 * 109.47276 * 60.00229 * 1 2 3 26 26 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47515 * 300.00069 * 1 2 3 28 28 H 1.08998 * 109.46850 * 240.00233 * 2 1 3 29 29 H 1.08996 * 109.46931 * 120.00109 * 2 1 3 30 30 H 1.09004 * 109.47473 * 60.00134 * 3 2 1 31 31 H 1.09000 * 109.47045 * 299.99912 * 3 2 1 32 32 H 1.08994 * 109.47341 * 60.00305 * 4 3 2 33 33 H 1.09000 * 109.47276 * 299.99770 * 4 3 2 34 34 H 0.97005 * 119.99945 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46801 * 150.00106 * 14 5 4 36 36 H 1.08993 * 109.47267 * 29.99865 * 14 5 4 37 37 H 1.08004 * 120.34751 * 0.04506 * 16 15 14 38 38 H 1.07999 * 120.86229 * 180.02562 * 17 16 15 39 39 H 1.09002 * 109.47323 * 59.99525 * 22 21 19 40 40 H 1.08995 * 109.47194 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.46415 * 299.99713 * 22 21 19 42 42 H 1.08002 * 119.72309 * 180.27057 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.3950 3.4304 -1.1818 7 1 4.9124 4.3783 -1.1735 8 6 4.0714 2.8269 -2.3893 9 7 3.1234 1.9150 -2.4360 10 14 4.9811 3.3091 -3.9479 11 1 6.2355 2.5212 -4.0527 12 1 4.1228 3.0327 -5.1277 13 1 5.3085 4.7569 -3.9022 14 6 4.1863 3.5560 1.2612 15 6 2.8969 4.2784 1.5558 16 6 1.9549 3.6821 2.3753 17 6 0.7721 4.3476 2.6434 18 6 0.5731 5.6072 2.0636 19 6 -0.6740 6.3593 2.3105 20 8 -1.5377 5.8864 3.0220 21 8 -0.8533 7.5699 1.7476 22 6 -2.1027 8.2519 2.0345 23 6 1.5756 6.1418 1.2528 24 7 2.6848 5.4687 1.0278 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 2.8976 1.4930 -3.2797 35 1 4.9978 4.2792 1.1810 36 1 4.4025 2.8551 2.0674 37 1 2.1412 2.7073 2.8014 38 1 0.0197 3.9058 3.2798 39 1 -2.1906 8.4126 3.1090 40 1 -2.1184 9.2129 1.5205 41 1 -2.9372 7.6417 1.6889 42 1 1.4385 7.1138 0.8023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139496947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:45 Heat of formation + Delta-G solvation = -29.939124 kcal Electronic energy + Delta-G solvation = -23823.453932 eV Core-core repulsion = 20383.573803 eV Total energy + Delta-G solvation = -3439.880129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51301 -39.32676 -36.50080 -36.27783 -33.64500 -32.42158 -31.95449 -30.62499 -28.42122 -27.76140 -26.18160 -23.98808 -23.25801 -22.70587 -21.10605 -20.40530 -19.90800 -17.92920 -17.11161 -16.81988 -16.30022 -15.79647 -15.53346 -14.95189 -14.41130 -14.15334 -13.86288 -13.48285 -13.38949 -13.36560 -12.98950 -12.73741 -12.69491 -12.16598 -12.12803 -11.66358 -11.54681 -11.44755 -11.02070 -10.82149 -10.80071 -10.57429 -10.47653 -10.20008 -10.15654 -9.99056 -9.78561 -9.51535 -9.33493 -8.94936 -8.60724 -8.34781 -7.01220 -5.85846 -3.15490 0.86523 1.70227 2.72935 2.76199 3.35882 3.42596 3.43656 4.19234 4.46157 4.71452 4.97770 5.03592 5.10238 5.14238 5.18776 5.34262 5.37432 5.43292 5.46614 5.78048 5.85422 5.88392 5.98860 6.01462 6.13068 6.28679 6.39862 6.42396 6.49821 6.52077 6.60056 6.67334 6.73612 6.87608 7.04437 7.14824 7.20572 7.63551 7.71839 7.81408 8.07824 8.23843 8.52312 9.11990 9.69147 10.12561 11.13928 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004978 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.223338 B = 5623.198248 C = 6394.407262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.166 3.834 5 N -0.572 5.572 6 C -0.232 4.232 7 H 0.082 0.918 8 C -0.005 4.005 9 N -0.890 5.890 10 Si 0.909 3.091 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.181 3.819 15 C 0.161 3.839 16 C -0.181 4.181 17 C -0.016 4.016 18 C -0.219 4.219 19 C 0.520 3.480 20 O -0.519 6.519 21 O -0.356 6.356 22 C 0.038 3.962 23 C 0.164 3.836 24 N -0.475 5.475 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.026 0.974 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.006 0.994 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 4.608 8.594 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.042 3.958 5 N -0.288 5.288 6 C -0.362 4.362 7 H 0.100 0.900 8 C -0.203 4.203 9 N -0.534 5.534 10 Si 0.739 3.261 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.053 3.947 15 C 0.020 3.980 16 C -0.202 4.202 17 C -0.041 4.041 18 C -0.224 4.224 19 C 0.366 3.634 20 O -0.409 6.409 21 O -0.272 6.272 22 C -0.056 4.056 23 C 0.003 3.997 24 N -0.185 5.185 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.781 4.691 8.055 10.476 hybrid contribution -1.042 -0.076 -0.344 1.100 sum -5.823 4.615 7.711 10.708 Atomic orbital electron populations 1.21730 0.97546 0.99819 1.01122 1.21385 0.94234 0.99320 1.00196 1.22335 0.98424 0.94156 1.01797 1.21085 0.92244 0.83718 0.98778 1.44803 1.72968 1.09358 1.01702 1.19512 1.28296 1.05349 0.83001 0.90042 1.24889 0.97866 0.99732 0.97820 1.70138 1.28307 1.29887 1.25090 0.86175 0.79266 0.78226 0.82422 1.21411 1.21882 1.20476 1.20164 0.90954 0.93831 0.89777 1.23263 1.00141 0.88577 0.86046 1.21848 0.94853 1.01502 1.01972 1.21480 0.96259 0.91716 0.94686 1.19849 0.95191 0.97875 1.09443 1.21123 0.86751 0.79260 0.76279 1.90790 1.44352 1.68873 1.36887 1.86555 1.40859 1.31653 1.68162 1.23234 0.83797 0.96657 1.01900 1.23126 0.87350 0.98598 0.90616 1.67717 1.21392 1.08464 1.20929 0.93058 0.94210 0.93838 0.92299 0.94332 0.95560 0.88390 0.88718 0.97554 0.93577 0.91298 0.92020 0.84718 0.84650 0.92026 0.88103 0.91973 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.11 -2.08 5.93 -26.73 -0.16 -2.24 16 3 C -0.13 -2.72 4.85 -26.73 -0.13 -2.85 16 4 C 0.17 3.68 4.92 -4.04 -0.02 3.66 16 5 N -0.57 -13.13 2.52 -174.61 -0.44 -13.57 16 6 C -0.23 -5.94 9.73 -15.06 -0.15 -6.09 16 7 H 0.08 2.11 7.89 -52.49 -0.41 1.69 16 8 C -0.01 -0.13 4.99 -17.43 -0.09 -0.22 16 9 N -0.89 -23.43 8.31 55.49 0.46 -22.97 16 10 Si 0.91 20.99 29.60 -169.99 -5.03 15.95 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.18 3.49 6.01 -5.19 -0.03 3.46 16 15 C 0.16 3.05 6.04 -82.50 -0.50 2.55 16 16 C -0.18 -3.04 7.46 -39.50 -0.29 -3.33 16 17 C -0.02 -0.26 9.72 -38.85 -0.38 -0.64 16 18 C -0.22 -3.67 5.89 -104.83 -0.62 -4.28 16 19 C 0.52 8.35 7.91 34.61 0.27 8.62 16 20 O -0.52 -9.16 16.21 -19.25 -0.31 -9.47 16 21 O -0.36 -4.91 9.84 -40.50 -0.40 -5.31 16 22 C 0.04 0.38 10.56 101.05 1.07 1.44 16 23 C 0.16 2.84 10.79 -17.12 -0.18 2.66 16 24 N -0.48 -9.41 10.25 -9.12 -0.09 -9.50 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.53 5.06 -51.93 -0.26 0.27 16 31 H 0.10 2.50 6.23 -51.93 -0.32 2.18 16 32 H 0.09 2.36 5.87 -51.93 -0.31 2.06 16 33 H 0.01 0.13 7.97 -51.93 -0.41 -0.29 16 34 H 0.25 6.61 8.31 -40.82 -0.34 6.28 16 35 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 36 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 37 H 0.13 2.01 7.76 -52.48 -0.41 1.61 16 38 H 0.14 2.00 7.74 -52.49 -0.41 1.60 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.16 2.37 7.62 -52.49 -0.40 1.97 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -28.65 348.23 -7.68 -36.32 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.27 Total: 2.58 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.84 Total: 0.72 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.07 Total: -46.04 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.71 Total: -14.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.65 -7.68 -36.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139496947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.383 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds