Wall clock time and date at job start Tue Mar 31 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 C 1.53001 * 109.46748 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46999 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00223 * 264.40192 * 5 4 3 7 7 H 1.07999 * 120.00648 * 190.59219 * 6 5 4 8 8 C 1.38811 * 119.99798 * 10.58916 * 6 5 4 9 9 N 1.31619 * 119.99975 * 20.29628 * 8 6 5 10 10 Si 1.86798 * 120.00187 * 200.28791 * 8 6 5 11 11 H 1.48503 * 109.47085 * 84.97623 * 10 8 6 12 12 H 1.48497 * 109.47558 * 204.97946 * 10 8 6 13 13 H 1.48505 * 109.47273 * 324.98346 * 10 8 6 14 14 C 1.46507 * 119.99995 * 84.40331 * 5 4 3 15 15 C 1.50700 * 109.46873 * 269.99677 * 14 5 4 16 16 C 1.38362 * 119.45205 * 95.00038 * 15 14 5 17 17 C 1.38343 * 119.31071 * 180.02562 * 16 15 14 18 18 C 1.40076 * 118.28109 * 0.27873 * 17 16 15 19 19 C 1.47720 * 120.56634 * 179.70225 * 18 17 16 20 20 O 1.21479 * 119.99953 * 0.02562 * 19 18 17 21 21 O 1.34702 * 120.00534 * 179.97438 * 19 18 17 22 22 C 1.45204 * 117.00546 * 180.02562 * 21 19 18 23 23 C 1.39576 * 118.87142 * 359.45463 * 18 17 16 24 24 N 1.31680 * 120.55838 * 0.55474 * 23 18 17 25 25 H 1.09000 * 109.47276 * 60.00229 * 1 2 3 26 26 H 1.09004 * 109.47168 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47515 * 300.00069 * 1 2 3 28 28 H 1.08998 * 109.46850 * 240.00233 * 2 1 3 29 29 H 1.08996 * 109.46931 * 120.00109 * 2 1 3 30 30 H 1.09004 * 109.47473 * 60.00134 * 3 2 1 31 31 H 1.09000 * 109.47045 * 299.99912 * 3 2 1 32 32 H 1.08994 * 109.47341 * 60.00305 * 4 3 2 33 33 H 1.09000 * 109.47276 * 299.99770 * 4 3 2 34 34 H 0.97005 * 119.99945 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46801 * 150.00106 * 14 5 4 36 36 H 1.08993 * 109.47267 * 29.99865 * 14 5 4 37 37 H 1.08004 * 120.34751 * 0.04506 * 16 15 14 38 38 H 1.07999 * 120.86229 * 180.02562 * 17 16 15 39 39 H 1.09002 * 109.47323 * 59.99525 * 22 21 19 40 40 H 1.08995 * 109.47194 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.46415 * 299.99713 * 22 21 19 42 42 H 1.08002 * 119.72309 * 180.27057 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.3950 3.4304 -1.1818 7 1 4.9124 4.3783 -1.1735 8 6 4.0714 2.8269 -2.3893 9 7 3.1234 1.9150 -2.4360 10 14 4.9811 3.3091 -3.9479 11 1 6.2355 2.5212 -4.0527 12 1 4.1228 3.0327 -5.1277 13 1 5.3085 4.7569 -3.9022 14 6 4.1863 3.5560 1.2612 15 6 2.8969 4.2784 1.5558 16 6 1.9549 3.6821 2.3753 17 6 0.7721 4.3476 2.6434 18 6 0.5731 5.6072 2.0636 19 6 -0.6740 6.3593 2.3105 20 8 -1.5377 5.8864 3.0220 21 8 -0.8533 7.5699 1.7476 22 6 -2.1027 8.2519 2.0345 23 6 1.5756 6.1418 1.2528 24 7 2.6848 5.4687 1.0278 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 2.8976 1.4930 -3.2797 35 1 4.9978 4.2792 1.1810 36 1 4.4025 2.8551 2.0674 37 1 2.1412 2.7073 2.8014 38 1 0.0197 3.9058 3.2798 39 1 -2.1906 8.4126 3.1090 40 1 -2.1184 9.2129 1.5205 41 1 -2.9372 7.6417 1.6889 42 1 1.4385 7.1138 0.8023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139496947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:44 Heat of formation + Delta-G solvation = -44.663391 kcal Electronic energy + Delta-G solvation = -23824.092424 eV Core-core repulsion = 20383.573803 eV Total energy + Delta-G solvation = -3440.518622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80516 -40.67484 -38.09228 -37.54399 -35.15344 -34.02610 -33.40377 -32.21943 -29.86733 -28.95186 -27.62503 -25.59557 -24.67788 -24.09608 -22.57050 -21.83829 -21.51717 -19.18473 -18.70048 -18.25644 -17.43263 -17.29447 -17.00061 -16.54907 -15.90518 -15.52156 -15.38706 -15.16564 -14.74293 -14.66693 -14.28782 -14.07707 -14.06207 -13.58031 -13.25420 -13.19095 -13.06155 -13.00740 -12.74870 -12.45048 -12.19427 -11.87470 -11.84952 -11.84430 -11.75816 -11.69873 -11.39159 -11.09123 -10.86804 -10.44293 -10.25542 -9.90179 -8.78840 -7.73672 -5.09142 -0.47266 0.33683 1.42857 1.50454 1.52911 1.58571 1.63553 2.55056 2.84300 3.29990 3.45382 3.72192 3.78740 3.85687 3.88859 4.09574 4.29044 4.33200 4.37102 4.43681 4.48450 4.59403 4.66452 4.69058 4.78253 4.83951 4.98565 5.03377 5.08239 5.12356 5.14823 5.24694 5.29333 5.34357 5.55036 5.59976 5.66377 5.71250 5.95205 6.31668 6.41349 6.58542 7.09430 7.26849 7.92829 8.30370 9.23581 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.004978 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.223338 B = 5623.198248 C = 6394.407262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.113 4.113 4 C 0.172 3.828 5 N -0.591 5.591 6 C -0.241 4.241 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.909 5.909 10 Si 0.955 3.045 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.280 1.280 14 C 0.181 3.819 15 C 0.151 3.849 16 C -0.173 4.173 17 C -0.014 4.014 18 C -0.213 4.213 19 C 0.525 3.475 20 O -0.534 6.534 21 O -0.358 6.358 22 C 0.029 3.971 23 C 0.156 3.844 24 N -0.506 5.506 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.243 0.757 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.062 0.938 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 5.047 10.705 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.152 4.152 4 C 0.048 3.952 5 N -0.310 5.310 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.555 5.555 10 Si 0.785 3.215 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.206 1.206 14 C 0.053 3.947 15 C 0.011 3.989 16 C -0.194 4.194 17 C -0.040 4.040 18 C -0.217 4.217 19 C 0.371 3.629 20 O -0.426 6.426 21 O -0.274 6.274 22 C -0.064 4.064 23 C -0.003 4.003 24 N -0.215 5.215 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.177 0.823 38 H 0.174 0.826 39 H 0.086 0.914 40 H 0.153 0.847 41 H 0.081 0.919 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.093 5.188 10.203 12.967 hybrid contribution -0.759 0.017 -0.746 1.064 sum -6.852 5.206 9.457 12.786 Atomic orbital electron populations 1.21670 0.96058 1.01261 1.00665 1.21323 0.95522 0.97424 1.00411 1.22088 0.97813 0.95499 0.99847 1.20912 0.92724 0.83487 0.98117 1.44613 1.74487 1.10129 1.01789 1.19467 1.28638 1.04660 0.84329 0.91366 1.25351 0.98824 1.00584 0.99576 1.70315 1.29442 1.31349 1.24444 0.85458 0.78207 0.77661 0.80137 1.21404 1.22856 1.20567 1.20219 0.90976 0.94277 0.89195 1.23233 0.99636 0.89033 0.87004 1.22061 0.94167 1.02133 1.01018 1.21785 0.96509 0.91373 0.94309 1.20100 0.95291 0.98131 1.08222 1.20957 0.86096 0.79864 0.76006 1.90787 1.44720 1.69452 1.37603 1.86543 1.42768 1.30575 1.67531 1.23625 0.82075 0.97658 1.03004 1.23410 0.87029 0.99148 0.90743 1.67676 1.22828 1.09382 1.21646 0.94905 0.91837 0.92847 0.94101 0.92006 0.94680 0.92865 0.92069 0.95252 0.94733 0.91918 0.88990 0.82285 0.82593 0.91357 0.84706 0.91945 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.11 -3.86 5.93 30.59 0.18 -3.68 16 3 C -0.11 -4.76 4.85 30.59 0.15 -4.61 16 4 C 0.17 7.61 4.92 86.38 0.42 8.04 16 5 N -0.59 -27.29 2.52 -706.35 -1.78 -29.07 16 6 C -0.24 -12.64 9.73 84.03 0.82 -11.82 16 7 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 8 C -0.05 -2.58 4.99 84.86 0.42 -2.16 16 9 N -0.91 -49.84 8.31 21.65 0.18 -49.66 16 10 Si 0.95 44.66 29.60 68.60 2.03 46.69 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 C 0.18 6.80 6.01 85.63 0.51 7.31 16 15 C 0.15 5.52 6.04 42.57 0.26 5.78 16 16 C -0.17 -5.35 7.46 22.32 0.17 -5.18 16 17 C -0.01 -0.43 9.72 22.74 0.22 -0.21 16 18 C -0.21 -6.68 5.89 -20.00 -0.12 -6.79 16 19 C 0.52 15.59 7.91 70.33 0.56 16.14 16 20 O -0.53 -17.48 16.21 19.90 0.32 -17.15 16 21 O -0.36 -8.98 9.84 -56.11 -0.55 -9.53 16 22 C 0.03 0.49 10.56 113.37 1.20 1.69 16 23 C 0.16 5.19 10.79 85.04 0.92 6.11 16 24 N -0.51 -19.63 10.25 -182.77 -1.87 -21.51 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.37 5.06 -2.38 -0.01 1.36 16 31 H 0.05 2.77 6.23 -2.39 -0.01 2.75 16 32 H 0.06 3.13 5.87 -2.39 -0.01 3.12 16 33 H 0.03 1.13 7.97 -2.39 -0.02 1.12 16 34 H 0.24 13.29 8.31 -92.70 -0.77 12.52 16 35 H 0.06 2.40 8.03 -2.39 -0.02 2.38 16 36 H 0.09 2.84 7.84 -2.39 -0.02 2.82 16 37 H 0.16 4.12 7.76 -2.91 -0.02 4.09 16 38 H 0.16 4.04 7.74 -2.91 -0.02 4.01 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.18 5.02 7.62 -2.91 -0.02 5.00 16 Total: -1.00 -63.40 348.23 5.75 -57.65 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.01 Total: 15.61 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.42 Total: 6.97 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.48 Total: -100.23 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.23 Total: -26.68 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.40 5.75 -57.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139496947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.986 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds