Wall clock time and date at job start Tue Mar 31 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99897 * 2 1 4 4 O 1.20823 * 120.00018 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99652 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47574 * 59.99848 * 5 3 2 7 7 N 1.46500 * 109.46792 * 180.02562 * 5 3 2 8 8 C 1.39081 * 120.00196 * 273.76483 * 7 5 3 9 9 C 1.38747 * 119.65558 * 3.47656 * 8 7 5 10 10 C 1.40775 * 118.67131 * 179.97438 * 9 8 7 11 11 C 1.41548 * 120.99366 * 180.29392 * 10 9 8 12 12 H 1.08006 * 120.00225 * 154.02191 * 11 10 9 13 13 C 1.40030 * 120.00287 * 334.02197 * 11 10 9 14 14 N 1.30744 * 119.99769 * 343.98833 * 13 11 10 15 15 Si 1.86795 * 120.00339 * 163.98843 * 13 11 10 16 16 H 1.48501 * 109.47173 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47122 * 119.99998 * 15 13 11 18 18 H 1.48496 * 109.47290 * 240.00068 * 15 13 11 19 19 C 1.41181 * 118.01154 * 0.02562 * 10 9 8 20 20 C 1.36556 * 119.15058 * 359.97438 * 19 10 9 21 21 N 1.32094 * 121.26703 * 359.97438 * 20 19 10 22 22 C 1.53003 * 109.47289 * 299.99414 * 5 3 2 23 23 C 1.52992 * 109.47246 * 305.88611 * 22 5 3 24 24 C 1.53003 * 109.46517 * 65.88640 * 22 5 3 25 25 C 1.52998 * 109.47057 * 185.88299 * 22 5 3 26 26 H 1.09003 * 109.47045 * 300.00253 * 1 2 3 27 27 H 1.08999 * 109.47361 * 59.99576 * 1 2 3 28 28 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00293 * 93.76906 * 7 5 3 30 30 H 1.08008 * 120.66110 * 359.97438 * 9 8 7 31 31 H 0.97003 * 120.00008 * 180.02562 * 14 13 11 32 32 H 1.08010 * 120.42516 * 179.97438 * 19 10 9 33 33 H 1.08000 * 119.37174 * 179.97438 * 20 19 10 34 34 H 1.09006 * 109.47218 * 60.00276 * 23 22 5 35 35 H 1.09005 * 109.47436 * 179.97438 * 23 22 5 36 36 H 1.08991 * 109.47614 * 299.99932 * 23 22 5 37 37 H 1.09000 * 109.47345 * 60.00408 * 24 22 5 38 38 H 1.09002 * 109.46856 * 179.97438 * 24 22 5 39 39 H 1.08996 * 109.47296 * 299.99957 * 24 22 5 40 40 H 1.08998 * 109.46960 * 65.54225 * 25 22 5 41 41 H 1.09003 * 109.46624 * 185.53894 * 25 22 5 42 42 H 1.09002 * 109.47629 * 305.53561 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9816 2.6797 0.0002 8 6 4.1024 3.3698 -1.2013 9 6 3.7585 2.7433 -2.3905 10 6 3.8883 3.4613 -3.5944 11 6 3.5457 2.8722 -4.8350 12 1 3.2439 3.4955 -5.6638 13 6 3.5979 1.4812 -4.9878 14 7 4.2475 0.7520 -4.1186 15 14 2.7394 0.6675 -6.4336 16 1 2.0796 1.7055 -7.2656 17 1 3.7376 -0.0644 -7.2539 18 1 1.7180 -0.2856 -5.9302 19 6 4.3650 4.7884 -3.5268 20 6 4.6788 5.3213 -2.3093 21 7 4.5440 4.6194 -1.1984 22 6 4.1138 0.5811 1.2484 23 6 3.4550 1.1780 2.4935 24 6 3.8060 -0.9159 1.1764 25 6 5.6279 0.7874 1.3239 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 4.1724 3.1287 0.8386 30 1 3.3983 1.7250 -2.3924 31 1 4.2840 -0.2115 -4.2246 32 1 4.4801 5.3748 -4.4265 33 1 5.0442 6.3361 -2.2535 34 1 2.3763 1.0310 2.4398 35 1 3.8448 0.6835 3.3833 36 1 3.6743 2.2445 2.5448 37 1 4.2753 -1.3412 0.2894 38 1 4.1964 -1.4102 2.0660 39 1 2.7273 -1.0629 1.1226 40 1 5.8435 1.8453 1.4739 41 1 6.0318 0.2125 2.1573 42 1 6.0873 0.4512 0.3943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155737164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:51 Heat of formation + Delta-G solvation = -60.590718 kcal Electronic energy + Delta-G solvation = -24792.819727 eV Core-core repulsion = 21351.610445 eV Total energy + Delta-G solvation = -3441.209282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52180 -38.49239 -37.39991 -36.04998 -34.16989 -33.35309 -30.51718 -28.81841 -28.05818 -27.27260 -26.84750 -25.91936 -25.61207 -21.70848 -21.30010 -20.42133 -18.96535 -17.82415 -17.06884 -16.60867 -16.13911 -15.56968 -15.56321 -14.79696 -14.20918 -13.99310 -13.82228 -13.72487 -13.40314 -13.24184 -12.67981 -12.62035 -12.55384 -12.31081 -12.16533 -12.04495 -11.73705 -11.52712 -11.40297 -11.15446 -10.85276 -10.83231 -10.71573 -10.52085 -10.36722 -10.20464 -10.14792 -9.91069 -9.41765 -9.02862 -7.96927 -7.85518 -6.83304 -6.50194 -4.53513 2.65619 2.79420 2.87646 3.04761 3.10330 3.13690 3.35341 3.90062 4.02151 4.66064 4.73594 4.88564 4.98866 5.23447 5.27084 5.35609 5.48068 5.63342 5.66809 5.75838 5.79923 5.82328 5.87999 5.99763 6.01607 6.07734 6.13261 6.27597 6.41625 6.51666 6.70378 6.74867 6.78763 6.96117 7.06452 7.23464 7.53900 7.83534 7.90732 8.07915 8.22905 8.42585 8.74190 8.84521 8.88683 9.74132 10.14440 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.006801 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.901429 B = 4116.113992 C = 5090.520364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.443 3.557 4 O -0.492 6.492 5 C 0.186 3.814 6 H 0.126 0.874 7 N -0.712 5.712 8 C 0.388 3.612 9 C -0.271 4.271 10 C 0.153 3.847 11 C -0.457 4.457 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.789 5.789 15 Si 0.906 3.094 16 H -0.260 1.260 17 H -0.273 1.273 18 H -0.272 1.272 19 C -0.298 4.298 20 C 0.131 3.869 21 N -0.616 5.616 22 C -0.067 4.067 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.135 4.135 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.394 0.606 30 H 0.120 0.880 31 H 0.279 0.721 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 -7.049 9.235 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.282 3.718 4 O -0.377 6.377 5 C 0.076 3.924 6 H 0.144 0.856 7 N -0.348 5.348 8 C 0.160 3.840 9 C -0.297 4.297 10 C 0.145 3.855 11 C -0.489 4.489 12 H 0.098 0.902 13 C -0.139 4.139 14 N -0.414 5.414 15 Si 0.730 3.270 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.323 4.323 20 C -0.022 4.022 21 N -0.338 5.338 22 C -0.068 4.068 23 C -0.203 4.203 24 C -0.207 4.207 25 C -0.192 4.192 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.230 0.770 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.026 -6.716 9.996 12.212 hybrid contribution -0.862 -0.520 -1.297 1.642 sum -2.888 -7.236 8.699 11.678 Atomic orbital electron populations 1.23175 0.77855 1.02984 1.02245 1.86591 1.22357 1.34072 1.84497 1.25084 0.93252 0.81302 0.72156 1.90652 1.66701 1.36344 1.43969 1.20431 0.85490 0.85041 1.01453 0.85649 1.43750 1.75621 1.09015 1.06403 1.18019 0.92220 0.88714 0.85005 1.21399 1.15302 1.02530 0.90465 1.17575 0.85001 0.90140 0.92789 1.19601 1.40168 0.91471 0.97611 0.90169 1.25910 0.92920 0.97670 0.97422 1.69793 1.30213 1.07275 1.34163 0.86294 0.79882 0.79576 0.81218 1.18331 1.19837 1.19688 1.21518 1.14434 0.99059 0.97269 1.21231 0.96053 0.96927 0.87975 1.66687 1.27849 1.07409 1.31895 1.20728 0.96836 0.96203 0.93028 1.21958 1.00168 1.01089 0.97097 1.22030 1.03543 0.93074 1.02016 1.21803 0.92995 1.02293 1.02148 0.92495 0.92082 0.88614 0.77021 0.86219 0.90966 0.88348 0.86276 0.92990 0.91877 0.92237 0.91915 0.92371 0.90466 0.92010 0.92509 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.71 7.75 -39.27 -0.30 -6.02 16 3 C 0.44 8.31 5.49 36.00 0.20 8.51 16 4 O -0.49 -10.86 16.14 -18.75 -0.30 -11.16 16 5 C 0.19 3.32 1.48 -69.08 -0.10 3.21 16 6 H 0.13 2.49 6.54 -51.93 -0.34 2.15 16 7 N -0.71 -14.35 3.98 -55.11 -0.22 -14.57 16 8 C 0.39 9.56 7.59 -154.98 -1.18 8.38 16 9 C -0.27 -7.18 7.80 -38.43 -0.30 -7.48 16 10 C 0.15 4.20 5.58 -106.56 -0.59 3.60 16 11 C -0.46 -12.24 9.11 -37.65 -0.34 -12.59 16 12 H 0.08 2.07 7.90 -52.48 -0.41 1.66 16 13 C 0.08 1.98 5.20 -17.34 -0.09 1.89 16 14 N -0.79 -19.85 11.01 55.55 0.61 -19.23 16 15 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 16 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C -0.30 -7.54 9.85 -39.07 -0.38 -7.93 16 20 C 0.13 3.13 11.10 -18.05 -0.20 2.93 16 21 N -0.62 -15.33 10.37 -12.82 -0.13 -15.46 16 22 C -0.07 -0.90 0.58 -154.51 -0.09 -0.99 16 23 C -0.15 -1.80 8.02 37.15 0.30 -1.50 16 24 C -0.15 -1.76 8.14 37.16 0.30 -1.46 16 25 C -0.14 -1.72 8.14 37.16 0.30 -1.42 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.39 7.36 6.84 -40.82 -0.28 7.08 16 30 H 0.12 3.21 4.43 -52.48 -0.23 2.97 16 31 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 32 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.05 0.68 7.05 -51.93 -0.37 0.32 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.76 6.81 -51.93 -0.35 0.41 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.95 5.49 -51.93 -0.29 0.66 16 40 H 0.06 0.83 7.31 -51.93 -0.38 0.45 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -30.68 340.69 -7.37 -38.05 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.01 Total: 13.07 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.11 Total: -3.36 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.26 Total: -49.27 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.61 Total: -17.18 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.68 -7.37 -38.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155737164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.539 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds