Wall clock time and date at job start Tue Mar 31 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99897 * 2 1 4 4 O 1.20823 * 120.00018 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99652 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47574 * 59.99848 * 5 3 2 7 7 N 1.46500 * 109.46792 * 180.02562 * 5 3 2 8 8 C 1.39081 * 120.00196 * 273.76483 * 7 5 3 9 9 C 1.38747 * 119.65558 * 3.47656 * 8 7 5 10 10 C 1.40775 * 118.67131 * 179.97438 * 9 8 7 11 11 C 1.41548 * 120.99366 * 180.29392 * 10 9 8 12 12 H 1.08006 * 120.00225 * 154.02191 * 11 10 9 13 13 C 1.40030 * 120.00287 * 334.02197 * 11 10 9 14 14 N 1.30744 * 119.99769 * 343.98833 * 13 11 10 15 15 Si 1.86795 * 120.00339 * 163.98843 * 13 11 10 16 16 H 1.48501 * 109.47173 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47122 * 119.99998 * 15 13 11 18 18 H 1.48496 * 109.47290 * 240.00068 * 15 13 11 19 19 C 1.41181 * 118.01154 * 0.02562 * 10 9 8 20 20 C 1.36556 * 119.15058 * 359.97438 * 19 10 9 21 21 N 1.32094 * 121.26703 * 359.97438 * 20 19 10 22 22 C 1.53003 * 109.47289 * 299.99414 * 5 3 2 23 23 C 1.52992 * 109.47246 * 305.88611 * 22 5 3 24 24 C 1.53003 * 109.46517 * 65.88640 * 22 5 3 25 25 C 1.52998 * 109.47057 * 185.88299 * 22 5 3 26 26 H 1.09003 * 109.47045 * 300.00253 * 1 2 3 27 27 H 1.08999 * 109.47361 * 59.99576 * 1 2 3 28 28 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 29 29 H 0.97002 * 120.00293 * 93.76906 * 7 5 3 30 30 H 1.08008 * 120.66110 * 359.97438 * 9 8 7 31 31 H 0.97003 * 120.00008 * 180.02562 * 14 13 11 32 32 H 1.08010 * 120.42516 * 179.97438 * 19 10 9 33 33 H 1.08000 * 119.37174 * 179.97438 * 20 19 10 34 34 H 1.09006 * 109.47218 * 60.00276 * 23 22 5 35 35 H 1.09005 * 109.47436 * 179.97438 * 23 22 5 36 36 H 1.08991 * 109.47614 * 299.99932 * 23 22 5 37 37 H 1.09000 * 109.47345 * 60.00408 * 24 22 5 38 38 H 1.09002 * 109.46856 * 179.97438 * 24 22 5 39 39 H 1.08996 * 109.47296 * 299.99957 * 24 22 5 40 40 H 1.08998 * 109.46960 * 65.54225 * 25 22 5 41 41 H 1.09003 * 109.46624 * 185.53894 * 25 22 5 42 42 H 1.09002 * 109.47629 * 305.53561 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9816 2.6797 0.0002 8 6 4.1024 3.3698 -1.2013 9 6 3.7585 2.7433 -2.3905 10 6 3.8883 3.4613 -3.5944 11 6 3.5457 2.8722 -4.8350 12 1 3.2439 3.4955 -5.6638 13 6 3.5979 1.4812 -4.9878 14 7 4.2475 0.7520 -4.1186 15 14 2.7394 0.6675 -6.4336 16 1 2.0796 1.7055 -7.2656 17 1 3.7376 -0.0644 -7.2539 18 1 1.7180 -0.2856 -5.9302 19 6 4.3650 4.7884 -3.5268 20 6 4.6788 5.3213 -2.3093 21 7 4.5440 4.6194 -1.1984 22 6 4.1138 0.5811 1.2484 23 6 3.4550 1.1780 2.4935 24 6 3.8060 -0.9159 1.1764 25 6 5.6279 0.7874 1.3239 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 4.1724 3.1287 0.8386 30 1 3.3983 1.7250 -2.3924 31 1 4.2840 -0.2115 -4.2246 32 1 4.4801 5.3748 -4.4265 33 1 5.0442 6.3361 -2.2535 34 1 2.3763 1.0310 2.4398 35 1 3.8448 0.6835 3.3833 36 1 3.6743 2.2445 2.5448 37 1 4.2753 -1.3412 0.2894 38 1 4.1964 -1.4102 2.0660 39 1 2.7273 -1.0629 1.1226 40 1 5.8435 1.8453 1.4739 41 1 6.0318 0.2125 2.1573 42 1 6.0873 0.4512 0.3943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155737164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:50 Heat of formation + Delta-G solvation = -77.911816 kcal Electronic energy + Delta-G solvation = -24793.570827 eV Core-core repulsion = 21351.610445 eV Total energy + Delta-G solvation = -3441.960381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96611 -40.27846 -38.76842 -37.49952 -36.04566 -34.98159 -32.45637 -30.39017 -29.48678 -28.29470 -27.93627 -27.77422 -27.08111 -23.58607 -22.91089 -22.05615 -20.28421 -19.62197 -18.50014 -18.06868 -17.70324 -17.24281 -17.18769 -16.39218 -15.99535 -15.47746 -15.29389 -15.02559 -14.73238 -14.53023 -14.39956 -14.31255 -14.21895 -13.76293 -13.20712 -13.17630 -13.00570 -12.94275 -12.78612 -12.64637 -12.56857 -12.00632 -11.98488 -11.90732 -11.84769 -11.70327 -11.64385 -11.58211 -11.23608 -10.76409 -9.93820 -9.83767 -8.71435 -8.33746 -6.54728 1.01197 1.05266 1.17966 1.35959 1.50177 1.53105 1.69246 2.17868 2.44757 2.81282 3.45962 3.71247 3.80571 3.87280 4.06808 4.21035 4.26833 4.28871 4.39275 4.43169 4.63304 4.74994 4.76733 4.83949 4.88953 4.91738 5.01676 5.02188 5.05337 5.10920 5.17245 5.25634 5.26308 5.33295 5.41101 5.56128 5.58891 5.94971 5.99813 6.23060 6.53082 6.76138 6.86198 6.87155 6.96512 7.81872 8.28430 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013051 B = 0.006801 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.901429 B = 4116.113992 C = 5090.520364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.353 6.353 3 C 0.447 3.553 4 O -0.532 6.532 5 C 0.184 3.816 6 H 0.101 0.899 7 N -0.702 5.702 8 C 0.386 3.614 9 C -0.295 4.295 10 C 0.121 3.879 11 C -0.491 4.491 12 H 0.078 0.922 13 C 0.040 3.960 14 N -0.809 5.809 15 Si 0.979 3.021 16 H -0.260 1.260 17 H -0.259 1.259 18 H -0.264 1.264 19 C -0.320 4.320 20 C 0.131 3.869 21 N -0.627 5.627 22 C -0.060 4.060 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.131 4.131 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.138 0.862 29 H 0.402 0.598 30 H 0.110 0.890 31 H 0.290 0.710 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -8.742 10.198 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.288 3.712 4 O -0.421 6.421 5 C 0.074 3.926 6 H 0.119 0.881 7 N -0.337 5.337 8 C 0.157 3.843 9 C -0.321 4.321 10 C 0.113 3.887 11 C -0.522 4.522 12 H 0.096 0.904 13 C -0.178 4.178 14 N -0.435 5.435 15 Si 0.799 3.201 16 H -0.183 1.183 17 H -0.184 1.184 18 H -0.188 1.188 19 C -0.345 4.345 20 C -0.021 4.021 21 N -0.350 5.350 22 C -0.061 4.061 23 C -0.199 4.199 24 C -0.203 4.203 25 C -0.189 4.189 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.156 0.844 29 H 0.239 0.761 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.174 0.826 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.158 -8.443 10.995 14.030 hybrid contribution -0.825 -0.034 -1.544 1.751 sum -2.983 -8.476 9.451 13.041 Atomic orbital electron populations 1.23519 0.75902 1.05665 1.01850 1.86582 1.24203 1.32307 1.83724 1.25148 0.93522 0.81459 0.71029 1.90631 1.67579 1.37726 1.46136 1.20641 0.85279 0.83795 1.02899 0.88103 1.43750 1.74899 1.09795 1.05305 1.18274 0.91152 0.88839 0.86084 1.21353 1.17188 1.02408 0.91186 1.18038 0.85676 0.91448 0.93556 1.19860 1.41820 0.92889 0.97642 0.90359 1.26765 0.93034 0.97552 1.00402 1.69830 1.30091 1.08085 1.35466 0.85207 0.78872 0.78422 0.77579 1.18327 1.18358 1.18827 1.21720 1.15450 0.98837 0.98464 1.21804 0.94703 0.98283 0.87329 1.66858 1.28458 1.07508 1.32200 1.20786 0.97161 0.96925 0.91198 1.21943 0.99546 1.00830 0.97599 1.22021 1.03344 0.91664 1.03228 1.21784 0.92322 1.02124 1.02625 0.91699 0.93762 0.84365 0.76143 0.87264 0.89901 0.87211 0.82602 0.93929 0.88687 0.93120 0.92554 0.89327 0.90905 0.93062 0.89263 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.56 113.37 1.20 1.79 16 2 O -0.35 -11.02 7.75 -51.45 -0.40 -11.42 16 3 C 0.45 16.98 5.49 71.23 0.39 17.38 16 4 O -0.53 -24.10 16.14 21.97 0.35 -23.74 16 5 C 0.18 6.63 1.48 44.24 0.07 6.70 16 6 H 0.10 4.19 6.54 -2.39 -0.02 4.17 16 7 N -0.70 -28.87 3.98 -328.27 -1.31 -30.17 16 8 C 0.39 19.52 7.59 132.90 1.01 20.53 16 9 C -0.29 -16.27 7.80 23.01 0.18 -16.09 16 10 C 0.12 6.87 5.58 -21.12 -0.12 6.76 16 11 C -0.49 -27.15 9.11 23.52 0.21 -26.94 16 12 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 13 C 0.04 2.00 5.20 85.29 0.44 2.44 16 14 N -0.81 -41.49 11.01 21.84 0.24 -41.25 16 15 Si 0.98 38.06 29.59 68.60 2.03 40.09 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 C -0.32 -16.58 9.85 22.60 0.22 -16.36 16 20 C 0.13 6.30 11.10 84.26 0.94 7.24 16 21 N -0.63 -31.53 10.37 -194.47 -2.02 -33.55 16 22 C -0.06 -1.53 0.58 -52.18 -0.03 -1.56 16 23 C -0.14 -3.22 8.02 71.98 0.58 -2.64 16 24 C -0.15 -3.11 8.14 71.98 0.59 -2.52 16 25 C -0.13 -3.15 8.14 71.98 0.59 -2.56 16 26 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 27 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.40 15.13 6.84 -92.71 -0.63 14.50 16 30 H 0.11 6.14 4.43 -2.91 -0.01 6.12 16 31 H 0.29 13.24 8.29 -92.71 -0.77 12.47 16 32 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 33 H 0.16 6.16 8.06 -2.91 -0.02 6.13 16 34 H 0.04 1.05 7.05 -2.38 -0.02 1.03 16 35 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.05 1.23 6.81 -2.39 -0.02 1.22 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.63 5.49 -2.39 -0.01 1.62 16 40 H 0.05 1.33 7.31 -2.39 -0.02 1.31 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -68.76 340.69 5.56 -63.20 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: 0.40 Total: 42.68 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 6.26 Total: -5.84 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.08 Total: -104.97 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.04 Total: -35.16 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -68.76 5.56 -63.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155737164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.716 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds