Wall clock time and date at job start Tue Mar 31 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46673 * 2 1 4 4 C 1.50706 * 109.46925 * 240.00482 * 2 1 3 5 5 H 1.07999 * 119.99515 * 239.99332 * 4 2 1 6 6 C 1.37878 * 119.99997 * 60.00102 * 4 2 1 7 7 N 1.31520 * 120.00062 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99864 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46904 * 89.99992 * 8 6 4 10 10 H 1.48498 * 109.47118 * 209.99649 * 8 6 4 11 11 H 1.48499 * 109.47134 * 330.00169 * 8 6 4 12 12 C 1.52997 * 109.47143 * 120.00448 * 2 1 3 13 13 N 1.46496 * 109.46953 * 299.99802 * 12 2 1 14 14 C 1.34779 * 120.00107 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99574 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00208 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 14 19 19 C 1.38834 * 120.35130 * 90.00037 * 18 17 16 20 20 C 1.38381 * 118.47948 * 179.97438 * 19 18 17 21 21 C 1.38914 * 119.11288 * 0.02562 * 20 19 18 22 22 O 1.35681 * 119.68381 * 179.97438 * 21 20 19 23 23 N 1.32248 * 120.63427 * 0.02562 * 21 20 19 24 24 C 1.31964 * 121.64280 * 359.68891 * 23 21 20 25 25 H 1.08992 * 109.47060 * 299.99532 * 1 2 3 26 26 H 1.09004 * 109.47059 * 60.00016 * 1 2 3 27 27 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46503 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47966 * 299.99941 * 3 2 1 30 30 H 1.09002 * 109.46994 * 60.00420 * 3 2 1 31 31 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46832 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46952 * 60.00137 * 12 2 1 34 34 H 0.97006 * 120.00096 * 0.02562 * 13 12 2 35 35 H 1.09001 * 109.47328 * 60.00147 * 16 14 13 36 36 H 1.09004 * 109.47043 * 299.99957 * 16 14 13 37 37 H 1.09001 * 109.46832 * 59.99966 * 17 16 14 38 38 H 1.09000 * 109.47611 * 300.00263 * 17 16 14 39 39 H 1.07999 * 120.75739 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.43602 * 179.97438 * 20 19 18 41 41 H 0.96703 * 113.99603 * 89.99119 * 22 21 20 42 42 H 1.08005 * 119.57690 * 180.31048 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 1.3447 -2.1612 -4.4126 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7563 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4453 14 6 1.8777 -0.4910 3.6694 15 8 2.5750 -1.4771 3.7806 16 6 1.3750 0.2190 4.8999 17 6 1.8851 -0.5023 6.1491 18 6 1.3828 0.2081 7.3797 19 6 0.1708 -0.1529 7.9526 20 6 -0.2530 0.5247 9.0822 21 6 0.5435 1.5376 9.6013 22 8 0.1390 2.2099 10.7082 23 7 1.6919 1.8534 9.0265 24 6 2.1250 1.2216 7.9519 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7081 1.1611 -3.4844 32 1 3.1300 -0.7209 1.2493 33 1 1.6767 -1.7490 1.2490 34 1 0.9937 0.7577 2.3564 35 1 0.2850 0.2182 4.9000 36 1 1.7376 1.2470 4.8999 37 1 2.9751 -0.5018 6.1492 38 1 1.5222 -1.5301 6.1489 39 1 -0.4275 -0.9445 7.5263 40 1 -1.1908 0.2701 9.5534 41 1 0.4381 1.8157 11.5391 42 1 3.0704 1.5037 7.5124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161259674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:03 Heat of formation + Delta-G solvation = -83.746565 kcal Electronic energy + Delta-G solvation = -22479.792853 eV Core-core repulsion = 19037.579458 eV Total energy + Delta-G solvation = -3442.213395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.48344 -40.67089 -38.34714 -38.01637 -35.07362 -34.94199 -33.10669 -32.67144 -30.39092 -27.54985 -27.52101 -26.99052 -25.19900 -24.66598 -22.66858 -21.23733 -20.56444 -19.76422 -18.41450 -17.92758 -17.64487 -17.00121 -16.68343 -16.52780 -16.41464 -15.93796 -15.24492 -14.99672 -14.81107 -14.61020 -14.21300 -14.10161 -13.97610 -13.88907 -13.17419 -13.11280 -12.96125 -12.87038 -12.66449 -12.60618 -12.53522 -12.23975 -12.13201 -11.96557 -11.46893 -11.25457 -10.89403 -10.76652 -10.65220 -10.39208 -10.37885 -9.87954 -9.71584 -8.01996 -6.17599 0.00249 0.27125 1.42297 1.45446 1.53388 1.77446 2.35827 2.50501 2.59295 2.87251 3.21589 3.67351 3.78752 3.94904 4.02505 4.06364 4.27951 4.31594 4.46378 4.53041 4.56001 4.70264 4.74415 4.77864 4.96404 5.02745 5.05276 5.07506 5.12773 5.21142 5.21640 5.36755 5.40377 5.61756 5.64983 5.67905 5.68536 6.16777 6.23450 6.44524 6.64834 6.74137 6.87196 6.96225 7.39901 7.50198 8.96680 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041335 B = 0.002431 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.221374 B =11516.488028 C =11712.741989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.714 5.714 14 C 0.503 3.497 15 O -0.593 6.593 16 C -0.125 4.125 17 C -0.051 4.051 18 C -0.138 4.138 19 C -0.055 4.055 20 C -0.180 4.180 21 C 0.286 3.714 22 O -0.496 6.496 23 N -0.534 5.534 24 C 0.117 3.883 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.409 0.591 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.418 0.582 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 1.035 22.419 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.365 5.365 14 C 0.291 3.709 15 O -0.474 6.474 16 C -0.165 4.165 17 C -0.090 4.090 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.201 4.201 21 C 0.108 3.892 22 O -0.306 6.306 23 N -0.253 5.253 24 C -0.039 4.039 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.246 0.754 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.181 0.819 40 H 0.180 0.820 41 H 0.279 0.721 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.228 1.520 22.365 22.648 hybrid contribution -0.032 -0.993 -1.211 1.566 sum -3.260 0.527 21.155 21.411 Atomic orbital electron populations 1.21676 0.97107 0.98674 1.00456 1.18362 0.93265 0.93003 0.90431 1.21678 0.97905 0.97916 1.00443 1.21291 1.31600 1.12101 0.91642 0.93791 1.25458 0.95222 0.95606 1.00986 1.69913 1.37056 1.23290 1.23558 0.85776 0.78664 0.78494 0.79972 1.20490 1.20895 1.20100 1.21219 0.96886 0.95044 0.84487 1.46202 1.52821 1.32003 1.05509 1.21369 0.79641 0.84273 0.85638 1.90660 1.40459 1.28749 1.87580 1.21672 1.03908 1.01038 0.89890 1.20132 1.01632 0.98631 0.88589 1.20892 0.96224 0.98452 0.98412 1.21795 0.94608 0.98295 0.93354 1.22329 1.02740 0.95917 0.99081 1.19496 0.89458 0.89941 0.90314 1.84738 1.74885 1.55295 1.15726 1.67170 1.16338 1.29271 1.12516 1.22713 0.99713 0.91244 0.90240 0.94216 0.92038 0.96304 0.96359 0.92025 0.94251 0.93071 0.94547 0.94434 0.75405 0.86677 0.86961 0.90365 0.90133 0.81930 0.81961 0.72142 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.24 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -27.64 8.01 25.60 0.21 -27.43 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.41 5.15 84.65 0.44 1.85 16 7 N -0.90 -47.65 9.35 21.45 0.20 -47.45 16 8 Si 0.94 42.36 29.54 68.60 2.03 44.39 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.08 4.50 86.38 0.39 6.47 16 13 N -0.71 -22.75 4.96 -463.08 -2.30 -25.04 16 14 C 0.50 14.89 7.83 87.66 0.69 15.58 16 15 O -0.59 -22.55 15.98 -3.03 -0.05 -22.60 16 16 C -0.13 -2.31 5.68 29.85 0.17 -2.14 16 17 C -0.05 -0.90 4.66 29.85 0.14 -0.76 16 18 C -0.14 -2.18 5.15 -19.77 -0.10 -2.28 16 19 C -0.06 -0.73 9.85 22.45 0.22 -0.51 16 20 C -0.18 -2.48 10.04 22.47 0.23 -2.26 16 21 C 0.29 5.28 7.74 84.79 0.66 5.93 16 22 O -0.50 -7.86 13.56 -89.99 -1.22 -9.08 16 23 N -0.53 -11.56 10.39 -308.95 -3.21 -14.77 16 24 C 0.12 2.12 10.85 84.63 0.92 3.04 16 25 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 26 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 27 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 30 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 31 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.41 11.18 6.16 -92.70 -0.57 10.61 16 35 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 38 H 0.08 1.50 8.05 -2.39 -0.02 1.48 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.42 2.31 9.06 -74.06 -0.67 1.64 16 42 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.46 347.49 0.33 -67.13 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.20 Total: 17.10 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 5.08 Total: -9.67 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -5.30 Total: -87.26 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.27 Total: -31.68 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -67.46 0.33 -67.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161259674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.616 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds