Wall clock time and date at job start Tue Mar 31 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00403 * 2 1 4 4 O 1.20832 * 119.99998 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00226 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47106 * 60.00000 * 5 3 2 7 7 N 1.46501 * 109.47179 * 179.97438 * 5 3 2 8 8 C 1.38816 * 120.00199 * 279.64203 * 7 5 3 9 9 C 1.39798 * 119.58374 * 354.99511 * 8 7 5 10 10 C 1.38590 * 119.49037 * 180.02562 * 9 8 7 11 11 C 1.38390 * 118.68512 * 0.24792 * 10 9 8 12 12 C 1.40555 * 119.14356 * 359.48607 * 11 10 9 13 13 C 1.41317 * 119.78447 * 180.25024 * 12 11 10 14 14 H 1.08001 * 120.00118 * 0.26767 * 13 12 11 15 15 C 1.40028 * 120.00095 * 180.27773 * 13 12 11 16 16 N 1.30745 * 119.99964 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99855 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47255 * 89.99856 * 17 15 13 19 19 H 1.48500 * 109.47156 * 209.99587 * 17 15 13 20 20 H 1.48504 * 109.47556 * 329.99725 * 17 15 13 21 21 N 1.31955 * 119.58760 * 174.97107 * 8 7 5 22 22 C 1.52998 * 109.46870 * 299.99847 * 5 3 2 23 23 C 1.53004 * 109.47275 * 306.10272 * 22 5 3 24 24 C 1.53004 * 109.47136 * 66.10103 * 22 5 3 25 25 C 1.53001 * 109.47256 * 186.10172 * 22 5 3 26 26 H 1.08997 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47081 * 300.00243 * 1 2 3 28 28 H 1.08997 * 109.46988 * 59.99728 * 1 2 3 29 29 H 0.97009 * 119.99750 * 99.64070 * 7 5 3 30 30 H 1.08006 * 120.25559 * 0.02562 * 9 8 7 31 31 H 1.08003 * 120.66094 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.42861 * 179.74854 * 11 10 9 33 33 H 0.96996 * 119.99492 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46958 * 60.00085 * 23 22 5 35 35 H 1.08996 * 109.47176 * 179.97438 * 23 22 5 36 36 H 1.08997 * 109.47135 * 299.99749 * 23 22 5 37 37 H 1.08998 * 109.46636 * 60.00160 * 24 22 5 38 38 H 1.08996 * 109.47202 * 179.97438 * 24 22 5 39 39 H 1.08998 * 109.47044 * 300.00242 * 24 22 5 40 40 H 1.08996 * 109.46926 * 55.07878 * 25 22 5 41 41 H 1.09002 * 109.46979 * 175.07903 * 25 22 5 42 42 H 1.09005 * 109.46689 * 295.08010 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9558 0.7808 -0.8908 7 7 3.9819 2.6796 -0.0011 8 6 3.9852 3.4020 -1.1864 9 6 3.6922 2.7544 -2.3902 10 6 3.6965 3.4774 -3.5726 11 6 3.9982 4.8272 -3.5247 12 6 4.2788 5.4223 -2.2826 13 6 4.5833 6.8007 -2.2174 14 1 4.5957 7.3943 -3.1195 15 6 4.8692 7.3969 -0.9831 16 7 4.8539 6.6784 0.1092 17 14 5.2724 9.2188 -0.8970 18 1 4.0211 9.9940 -0.7009 19 1 6.1931 9.4688 0.2410 20 1 5.9237 9.6420 -2.1627 21 7 4.2644 4.6915 -1.1628 22 6 4.1139 0.5809 1.2483 23 6 3.4510 1.1741 2.4932 24 6 3.8108 -0.9170 1.1739 25 6 5.6273 0.7917 1.3269 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.2546 3.1050 0.8270 30 1 3.4641 1.6987 -2.3988 31 1 3.4733 2.9961 -4.5133 32 1 4.0137 5.4167 -4.4295 33 1 5.0516 7.0916 0.9642 34 1 2.3728 1.0238 2.4373 35 1 3.8407 0.6795 3.3829 36 1 3.6670 2.2411 2.5463 37 1 4.2830 -1.3395 0.2870 38 1 4.2012 -1.4113 2.0634 39 1 2.7326 -1.0671 1.1179 40 1 5.8478 1.8586 1.2918 41 1 6.0044 0.3732 2.2600 42 1 6.1076 0.2935 0.4847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163508316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:58 Heat of formation + Delta-G solvation = -48.121972 kcal Electronic energy + Delta-G solvation = -24423.390062 eV Core-core repulsion = 20982.721465 eV Total energy + Delta-G solvation = -3440.668597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59115 -38.37275 -37.37352 -36.11987 -34.02739 -32.87507 -30.40566 -29.17190 -28.32783 -27.29774 -26.95128 -25.80340 -25.32462 -21.54253 -21.39734 -20.37720 -19.03209 -17.39831 -17.20366 -16.85182 -16.22179 -15.98646 -15.09195 -14.79782 -14.36911 -13.99283 -13.87724 -13.57501 -13.38011 -13.28303 -12.75276 -12.70758 -12.26308 -12.21036 -12.11009 -11.91870 -11.74627 -11.56687 -11.20302 -10.97091 -10.92636 -10.77926 -10.74593 -10.50946 -10.44973 -10.38417 -10.18133 -9.90718 -9.48259 -8.92677 -7.90570 -7.49651 -6.59199 -6.30264 -4.44495 2.58411 2.77088 2.95100 3.13248 3.16519 3.28498 3.36786 4.00700 4.05240 4.59842 4.79583 4.88001 4.95371 5.16050 5.19349 5.26481 5.41061 5.53245 5.58327 5.68007 5.73109 5.84669 5.92359 5.97964 6.07257 6.09967 6.15196 6.24341 6.32958 6.45820 6.53955 6.64408 6.85115 6.86766 6.92841 7.26644 7.58075 7.78334 7.90434 8.12450 8.16890 8.34928 8.62670 8.81793 9.11956 10.25997 10.42425 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.004832 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.269332 B = 5793.815499 C = 6294.311761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.437 3.563 4 O -0.482 6.482 5 C 0.189 3.811 6 H 0.110 0.890 7 N -0.709 5.709 8 C 0.418 3.582 9 C -0.365 4.365 10 C -0.031 4.031 11 C -0.314 4.314 12 C 0.292 3.708 13 C -0.433 4.433 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.715 5.715 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.525 5.525 22 C -0.067 4.067 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.139 4.139 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.402 0.598 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.269 0.731 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -13.451 4.936 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C 0.275 3.725 4 O -0.366 6.366 5 C 0.078 3.922 6 H 0.128 0.872 7 N -0.346 5.346 8 C 0.178 3.822 9 C -0.391 4.391 10 C -0.055 4.055 11 C -0.337 4.337 12 C 0.166 3.834 13 C -0.465 4.465 14 H 0.101 0.899 15 C -0.154 4.154 16 N -0.336 5.336 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 N -0.245 5.245 22 C -0.068 4.068 23 C -0.204 4.204 24 C -0.206 4.206 25 C -0.196 4.196 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.239 0.761 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.026 -12.826 5.846 14.240 hybrid contribution -0.405 0.631 -0.529 0.918 sum -2.432 -12.195 5.316 13.524 Atomic orbital electron populations 1.23169 0.77821 1.02917 1.02342 1.86578 1.22383 1.34223 1.84729 1.25131 0.93289 0.81345 0.72704 1.90711 1.66517 1.36215 1.43109 1.20330 0.85499 0.85607 1.00723 0.87230 1.43908 1.73364 1.08252 1.09070 1.18382 0.89911 0.89822 0.84065 1.20539 1.26812 0.98504 0.93243 1.20560 0.95233 0.94046 0.95673 1.21537 1.18639 0.95130 0.98345 1.18192 0.86858 0.92778 0.85600 1.19579 1.40210 0.92705 0.94026 0.89880 1.26047 0.94022 0.99759 0.95555 1.70150 1.29001 1.35939 0.98519 0.86375 0.79018 0.82760 0.78893 1.19537 1.20249 1.18598 1.68167 1.24747 1.01783 1.29841 1.20711 0.96861 0.96013 0.93169 1.21960 1.00067 1.01589 0.96811 1.22031 1.03516 0.93152 1.01879 1.21857 0.92884 1.03190 1.01719 0.88627 0.92395 0.92181 0.76096 0.89789 0.88946 0.88651 0.91949 0.93003 0.91873 0.91804 0.92246 0.92274 0.90439 0.91350 0.92358 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.12 7.76 -39.24 -0.30 -5.43 16 3 C 0.44 7.64 5.44 36.01 0.20 7.83 16 4 O -0.48 -10.52 15.94 -18.76 -0.30 -10.81 16 5 C 0.19 3.09 1.52 -69.08 -0.10 2.99 16 6 H 0.11 1.76 6.50 -51.93 -0.34 1.43 16 7 N -0.71 -14.48 4.04 -55.03 -0.22 -14.70 16 8 C 0.42 10.45 7.29 -155.33 -1.13 9.32 16 9 C -0.37 -8.72 9.14 -38.87 -0.36 -9.07 16 10 C -0.03 -0.74 10.15 -39.40 -0.40 -1.14 16 11 C -0.31 -8.16 9.83 -38.65 -0.38 -8.54 16 12 C 0.29 8.34 6.55 -85.00 -0.56 7.79 16 13 C -0.43 -11.97 9.14 -37.74 -0.34 -12.32 16 14 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 15 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 16 N -0.71 -19.31 11.46 55.55 0.64 -18.67 16 17 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 N -0.52 -14.83 7.89 -10.33 -0.08 -14.92 16 22 C -0.07 -0.84 0.57 -154.50 -0.09 -0.93 16 23 C -0.15 -1.85 8.02 37.16 0.30 -1.55 16 24 C -0.15 -1.53 8.14 37.16 0.30 -1.23 16 25 C -0.14 -1.67 8.32 37.16 0.31 -1.36 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.40 8.21 6.63 -40.82 -0.27 7.94 16 30 H 0.08 1.80 6.14 -52.48 -0.32 1.48 16 31 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 34 H 0.05 0.69 7.05 -51.93 -0.37 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.90 6.89 -51.93 -0.36 0.54 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.84 5.50 -51.93 -0.29 0.55 16 40 H 0.07 0.96 6.80 -51.93 -0.35 0.61 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -32.36 341.00 -7.51 -39.87 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.07 Total: 10.49 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.28 Total: -5.01 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.33 Total: -48.29 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.60 Total: -16.24 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.36 -7.51 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163508316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.251 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds