Wall clock time and date at job start Tue Mar 31 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00403 * 2 1 4 4 O 1.20832 * 119.99998 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00226 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47106 * 60.00000 * 5 3 2 7 7 N 1.46501 * 109.47179 * 179.97438 * 5 3 2 8 8 C 1.38816 * 120.00199 * 279.64203 * 7 5 3 9 9 C 1.39798 * 119.58374 * 354.99511 * 8 7 5 10 10 C 1.38590 * 119.49037 * 180.02562 * 9 8 7 11 11 C 1.38390 * 118.68512 * 0.24792 * 10 9 8 12 12 C 1.40555 * 119.14356 * 359.48607 * 11 10 9 13 13 C 1.41317 * 119.78447 * 180.25024 * 12 11 10 14 14 H 1.08001 * 120.00118 * 0.26767 * 13 12 11 15 15 C 1.40028 * 120.00095 * 180.27773 * 13 12 11 16 16 N 1.30745 * 119.99964 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99855 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47255 * 89.99856 * 17 15 13 19 19 H 1.48500 * 109.47156 * 209.99587 * 17 15 13 20 20 H 1.48504 * 109.47556 * 329.99725 * 17 15 13 21 21 N 1.31955 * 119.58760 * 174.97107 * 8 7 5 22 22 C 1.52998 * 109.46870 * 299.99847 * 5 3 2 23 23 C 1.53004 * 109.47275 * 306.10272 * 22 5 3 24 24 C 1.53004 * 109.47136 * 66.10103 * 22 5 3 25 25 C 1.53001 * 109.47256 * 186.10172 * 22 5 3 26 26 H 1.08997 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47081 * 300.00243 * 1 2 3 28 28 H 1.08997 * 109.46988 * 59.99728 * 1 2 3 29 29 H 0.97009 * 119.99750 * 99.64070 * 7 5 3 30 30 H 1.08006 * 120.25559 * 0.02562 * 9 8 7 31 31 H 1.08003 * 120.66094 * 179.97438 * 10 9 8 32 32 H 1.07999 * 120.42861 * 179.74854 * 11 10 9 33 33 H 0.96996 * 119.99492 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46958 * 60.00085 * 23 22 5 35 35 H 1.08996 * 109.47176 * 179.97438 * 23 22 5 36 36 H 1.08997 * 109.47135 * 299.99749 * 23 22 5 37 37 H 1.08998 * 109.46636 * 60.00160 * 24 22 5 38 38 H 1.08996 * 109.47202 * 179.97438 * 24 22 5 39 39 H 1.08998 * 109.47044 * 300.00242 * 24 22 5 40 40 H 1.08996 * 109.46926 * 55.07878 * 25 22 5 41 41 H 1.09002 * 109.46979 * 175.07903 * 25 22 5 42 42 H 1.09005 * 109.46689 * 295.08010 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9558 0.7808 -0.8908 7 7 3.9819 2.6796 -0.0011 8 6 3.9852 3.4020 -1.1864 9 6 3.6922 2.7544 -2.3902 10 6 3.6965 3.4774 -3.5726 11 6 3.9982 4.8272 -3.5247 12 6 4.2788 5.4223 -2.2826 13 6 4.5833 6.8007 -2.2174 14 1 4.5957 7.3943 -3.1195 15 6 4.8692 7.3969 -0.9831 16 7 4.8539 6.6784 0.1092 17 14 5.2724 9.2188 -0.8970 18 1 4.0211 9.9940 -0.7009 19 1 6.1931 9.4688 0.2410 20 1 5.9237 9.6420 -2.1627 21 7 4.2644 4.6915 -1.1628 22 6 4.1139 0.5809 1.2483 23 6 3.4510 1.1741 2.4932 24 6 3.8108 -0.9170 1.1739 25 6 5.6273 0.7917 1.3269 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 4.2546 3.1050 0.8270 30 1 3.4641 1.6987 -2.3988 31 1 3.4733 2.9961 -4.5133 32 1 4.0137 5.4167 -4.4295 33 1 5.0516 7.0916 0.9642 34 1 2.3728 1.0238 2.4373 35 1 3.8407 0.6795 3.3829 36 1 3.6670 2.2411 2.5463 37 1 4.2830 -1.3395 0.2870 38 1 4.2012 -1.4113 2.0634 39 1 2.7326 -1.0671 1.1179 40 1 5.8478 1.8586 1.2918 41 1 6.0044 0.3732 2.2600 42 1 6.1076 0.2935 0.4847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163508316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:58 Heat of formation + Delta-G solvation = -66.998055 kcal Electronic energy + Delta-G solvation = -24424.208591 eV Core-core repulsion = 20982.721465 eV Total energy + Delta-G solvation = -3441.487125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94501 -40.10793 -38.73961 -37.48289 -35.79869 -34.61879 -32.33681 -30.90856 -29.57961 -28.29795 -27.90111 -27.36152 -27.01225 -23.44174 -22.93755 -21.98007 -20.26395 -19.29177 -18.60094 -18.26789 -17.69960 -17.34196 -16.72654 -16.50382 -16.05109 -15.41992 -15.16495 -14.96826 -14.67009 -14.54473 -14.40706 -14.21825 -13.84011 -13.61821 -13.15955 -13.03643 -12.91626 -12.83458 -12.73331 -12.63370 -12.54843 -12.25577 -11.99246 -11.84784 -11.74563 -11.71573 -11.63528 -11.55869 -11.24159 -10.73122 -9.88761 -9.48097 -8.43754 -8.24457 -6.49836 1.00831 1.19768 1.27688 1.40394 1.52905 1.55938 1.75128 2.24264 2.51465 2.91840 3.46933 3.72756 3.82490 4.03159 4.08264 4.28068 4.30621 4.32631 4.37034 4.40861 4.66409 4.68508 4.75569 4.78097 4.90681 4.91815 4.96749 4.99525 5.04018 5.07946 5.15517 5.27603 5.32939 5.36638 5.40901 5.59580 5.66258 5.90541 5.98817 6.19169 6.44019 6.75942 6.78851 6.89143 7.14826 8.30679 8.49550 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.004832 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.269332 B = 5793.815499 C = 6294.311761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.444 3.556 4 O -0.534 6.534 5 C 0.183 3.817 6 H 0.117 0.883 7 N -0.704 5.704 8 C 0.404 3.596 9 C -0.368 4.368 10 C -0.030 4.030 11 C -0.341 4.341 12 C 0.258 3.742 13 C -0.469 4.469 14 H 0.088 0.912 15 C 0.025 3.975 16 N -0.751 5.751 17 Si 0.987 3.013 18 H -0.266 1.266 19 H -0.266 1.266 20 H -0.255 1.255 21 N -0.560 5.560 22 C -0.059 4.059 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.136 4.136 26 H 0.141 0.859 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.398 0.602 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.276 0.724 34 H 0.041 0.959 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -15.326 5.462 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.285 3.715 4 O -0.422 6.422 5 C 0.073 3.927 6 H 0.134 0.866 7 N -0.339 5.339 8 C 0.164 3.836 9 C -0.394 4.394 10 C -0.054 4.054 11 C -0.364 4.364 12 C 0.131 3.869 13 C -0.501 4.501 14 H 0.106 0.894 15 C -0.197 4.197 16 N -0.373 5.373 17 Si 0.808 3.192 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.178 1.178 21 N -0.282 5.282 22 C -0.059 4.059 23 C -0.202 4.202 24 C -0.200 4.200 25 C -0.193 4.193 26 H 0.159 0.841 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.235 0.765 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.849 -14.785 6.376 16.207 hybrid contribution -0.548 1.011 -0.671 1.332 sum -2.398 -13.774 5.705 15.100 Atomic orbital electron populations 1.23505 0.75989 1.05655 1.01730 1.86571 1.24027 1.32024 1.83800 1.25205 0.93581 0.81442 0.71249 1.90702 1.67621 1.38048 1.45809 1.20725 0.85198 0.83572 1.03179 0.86581 1.43996 1.72791 1.09591 1.07547 1.18813 0.89242 0.89511 0.86040 1.20864 1.25890 0.99743 0.92897 1.20979 0.93696 0.93402 0.97312 1.21702 1.20245 0.96441 0.97999 1.18700 0.87649 0.93770 0.86774 1.19950 1.41827 0.93132 0.95205 0.89436 1.26985 0.93241 1.04886 0.94564 1.70254 1.29521 1.38276 0.99214 0.85143 0.78888 0.75890 0.79320 1.19122 1.19087 1.17805 1.68151 1.26307 1.03367 1.30351 1.20761 0.96944 0.97273 0.90960 1.21956 0.99580 1.00480 0.98198 1.22011 1.03473 0.90914 1.03608 1.21835 0.92454 1.01612 1.03405 0.84132 0.92626 0.93320 0.76528 0.87277 0.85288 0.87754 0.91333 0.93982 0.88960 0.94156 0.91299 0.89836 0.90834 0.94101 0.89736 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -9.19 7.76 -51.36 -0.40 -9.59 16 3 C 0.44 15.29 5.44 71.24 0.39 15.68 16 4 O -0.53 -23.75 15.94 21.95 0.35 -23.40 16 5 C 0.18 5.84 1.52 44.25 0.07 5.91 16 6 H 0.12 3.56 6.50 -2.39 -0.02 3.55 16 7 N -0.70 -29.45 4.04 -328.02 -1.32 -30.77 16 8 C 0.40 20.76 7.29 133.42 0.97 21.73 16 9 C -0.37 -17.55 9.14 22.73 0.21 -17.34 16 10 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 11 C -0.34 -18.18 9.83 22.87 0.22 -17.96 16 12 C 0.26 15.31 6.55 40.18 0.26 15.58 16 13 C -0.47 -26.92 9.14 23.46 0.21 -26.70 16 14 H 0.09 4.70 7.85 -2.91 -0.02 4.68 16 15 C 0.03 1.34 5.50 85.29 0.47 1.81 16 16 N -0.75 -41.99 11.46 21.84 0.25 -41.74 16 17 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 18 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 21 N -0.56 -32.97 7.89 -186.59 -1.47 -34.44 16 22 C -0.06 -1.37 0.57 -52.18 -0.03 -1.40 16 23 C -0.14 -3.47 8.02 71.98 0.58 -2.89 16 24 C -0.14 -2.45 8.14 71.98 0.59 -1.86 16 25 C -0.14 -3.02 8.32 71.98 0.60 -2.42 16 26 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.22 8.13 -2.38 -0.02 1.20 16 28 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.40 17.05 6.63 -92.70 -0.61 16.43 16 30 H 0.11 4.52 6.14 -2.91 -0.02 4.51 16 31 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 32 H 0.10 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.28 13.95 8.29 -92.71 -0.77 13.18 16 34 H 0.04 1.08 7.05 -2.38 -0.02 1.06 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.15 6.89 -2.39 -0.02 1.13 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.34 5.50 -2.39 -0.01 1.33 16 40 H 0.04 1.14 6.80 -2.39 -0.02 1.12 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -73.89 341.00 5.81 -68.08 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.42 Total: 39.39 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.96 Total: -9.35 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -2.55 Total: -106.95 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -73.89 5.81 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163508316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.082 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds