Wall clock time and date at job start Tue Mar 31 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 117.00013 * 2 1 4 4 O 1.20821 * 120.00103 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99869 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47197 * 59.99515 * 5 3 2 7 7 N 1.46494 * 109.47108 * 180.02562 * 5 3 2 8 8 C 1.32209 * 119.99860 * 233.87334 * 7 5 3 9 9 C 1.46912 * 120.83319 * 354.40886 * 8 7 5 10 10 C 1.34381 * 119.36999 * 179.72938 * 9 8 7 11 11 N 1.36428 * 121.22077 * 359.97438 * 10 9 8 12 12 H 0.96999 * 119.09118 * 179.97438 * 11 10 9 13 13 C 1.37769 * 121.81875 * 0.02562 * 11 10 9 14 14 C 1.40177 * 119.74373 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00300 * 150.47031 * 14 13 11 16 16 C 1.40354 * 119.99787 * 330.46962 * 14 13 11 17 17 N 1.30583 * 120.00439 * 348.72487 * 16 14 13 18 18 Si 1.86803 * 119.99975 * 168.71881 * 16 14 13 19 19 H 1.48506 * 109.47160 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46968 * 120.00062 * 18 16 14 21 21 H 1.48499 * 109.47300 * 239.99975 * 18 16 14 22 22 C 1.39068 * 120.51346 * 359.97438 * 13 11 10 23 23 C 1.53006 * 109.46999 * 299.99791 * 5 3 2 24 24 C 1.52992 * 109.47325 * 300.00466 * 23 5 3 25 25 C 1.53006 * 109.47061 * 60.00364 * 23 5 3 26 26 C 1.52998 * 109.46835 * 179.97438 * 23 5 3 27 27 H 1.09003 * 109.47231 * 300.00519 * 1 2 3 28 28 H 1.09006 * 109.46959 * 60.00136 * 1 2 3 29 29 H 1.08997 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.31877 * 359.75416 * 9 8 7 31 31 H 1.08000 * 119.39097 * 180.02562 * 10 9 8 32 32 H 0.96999 * 120.00331 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.62712 * 180.02562 * 22 13 11 34 34 H 1.08994 * 109.47718 * 59.99571 * 24 23 5 35 35 H 1.09001 * 109.47315 * 180.02562 * 24 23 5 36 36 H 1.09011 * 109.46956 * 299.99856 * 24 23 5 37 37 H 1.08998 * 109.47131 * 59.99170 * 25 23 5 38 38 H 1.08994 * 109.47050 * 179.97438 * 25 23 5 39 39 H 1.09001 * 109.46649 * 299.99967 * 25 23 5 40 40 H 1.08998 * 109.47291 * 60.00504 * 26 23 5 41 41 H 1.09008 * 109.46806 * 179.97438 * 26 23 5 42 42 H 1.09000 * 109.47349 * 299.99717 * 26 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9817 2.6797 0.0011 8 6 4.8169 3.1224 -0.9233 9 6 5.4344 2.1989 -1.8846 10 6 6.2749 2.6814 -2.8155 11 7 6.5646 4.0128 -2.8846 12 1 7.1759 4.3275 -3.5688 13 6 6.0138 4.9224 -2.0086 14 6 6.3415 6.2808 -2.1195 15 1 5.6295 7.0345 -1.8171 16 6 7.5949 6.6615 -2.6234 17 7 8.5339 5.7679 -2.7817 18 14 7.9200 8.4465 -3.0678 19 1 6.7032 9.2536 -2.7969 20 1 9.0477 8.9625 -2.2509 21 1 8.2677 8.5426 -4.5083 22 6 5.1345 4.5036 -1.0160 23 6 4.1129 0.5815 1.2503 24 6 3.5653 1.2753 2.4991 25 6 3.6791 -0.8857 1.2504 26 6 5.6408 0.6610 1.2505 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 5.2148 1.1422 -1.8438 31 1 6.7288 2.0029 -3.5226 32 1 9.4003 6.0311 -3.1295 33 1 4.7013 5.2151 -0.3287 34 1 2.4768 1.2183 2.4987 35 1 3.9550 0.7816 3.3894 36 1 3.8744 2.3206 2.4990 37 1 4.0691 -1.3800 0.3606 38 1 4.0688 -1.3797 2.1404 39 1 2.5905 -0.9427 1.2499 40 1 5.9502 1.7062 1.2502 41 1 6.0301 0.1675 2.1411 42 1 6.0305 0.1664 0.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163509189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:04 Heat of formation + Delta-G solvation = -54.025923 kcal Electronic energy + Delta-G solvation = -23977.657105 eV Core-core repulsion = 20536.732494 eV Total energy + Delta-G solvation = -3440.924611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08504 -38.64668 -37.05462 -35.80681 -34.31117 -33.10959 -30.66704 -29.27441 -27.96953 -26.76606 -26.64124 -26.50377 -24.96121 -21.68062 -21.16191 -20.24269 -18.58028 -18.02291 -16.81247 -16.67555 -16.33766 -15.96667 -15.31284 -14.83661 -14.54132 -14.01654 -13.72344 -13.51068 -13.14412 -12.97095 -12.82132 -12.62312 -12.42762 -11.99800 -11.93509 -11.79417 -11.56206 -11.45942 -11.16832 -11.15488 -10.97479 -10.72624 -10.66527 -10.37711 -10.32552 -10.18955 -10.10282 -9.81279 -9.68032 -9.29478 -8.24590 -7.58552 -7.27463 -6.05260 -4.84696 2.54204 2.60960 2.88654 2.92113 2.95568 3.00838 3.37390 3.65353 4.23058 4.57873 5.13502 5.25511 5.29496 5.33003 5.37612 5.41343 5.53067 5.57279 5.77309 5.84837 5.94156 6.10024 6.13077 6.17757 6.23796 6.34457 6.37056 6.52626 6.56738 6.62743 6.65366 6.72264 6.80872 6.84223 6.97284 6.99455 7.32885 7.59562 7.71561 7.92749 8.13552 8.27869 8.50615 8.72772 8.83959 9.59358 9.72848 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.003881 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.182286 B = 7213.140732 C = 7512.379268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.461 3.539 4 O -0.491 6.491 5 C 0.112 3.888 6 H 0.065 0.935 7 N -0.639 5.639 8 C 0.292 3.708 9 C -0.306 4.306 10 C 0.130 3.870 11 N -0.597 5.597 12 H 0.414 0.586 13 C 0.335 3.665 14 C -0.470 4.470 15 H 0.103 0.897 16 C 0.077 3.923 17 N -0.819 5.819 18 Si 0.925 3.075 19 H -0.256 1.256 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.344 4.344 23 C -0.054 4.054 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.291 0.709 33 H 0.117 0.883 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -8.661 -0.142 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.375 6.375 5 C -0.002 4.002 6 H 0.083 0.917 7 N -0.368 5.368 8 C 0.132 3.868 9 C -0.336 4.336 10 C 0.000 4.000 11 N -0.205 5.205 12 H 0.252 0.748 13 C 0.226 3.774 14 C -0.503 4.503 15 H 0.121 0.879 16 C -0.141 4.141 17 N -0.447 5.447 18 Si 0.748 3.252 19 H -0.179 1.179 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.373 4.373 23 C -0.055 4.055 24 C -0.186 4.186 25 C -0.209 4.209 26 C -0.188 4.188 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.020 -8.190 0.580 8.748 hybrid contribution 0.693 0.128 -1.146 1.345 sum -2.327 -8.062 -0.566 8.410 Atomic orbital electron populations 1.23106 0.78613 1.02593 1.02022 1.86656 1.21792 1.34915 1.84910 1.24597 0.92628 0.80625 0.71883 1.90586 1.66780 1.36377 1.43743 1.20952 0.85358 0.96121 0.97720 0.91736 1.73529 1.27152 1.07921 1.28159 1.20281 0.87703 0.92739 0.86058 1.22275 1.08199 0.99673 1.03486 1.21267 0.95775 0.85489 0.97473 1.42101 1.43220 1.04592 1.30622 0.74764 1.17672 0.86348 0.88257 0.85109 1.19538 1.00419 0.91683 1.38668 0.87878 1.26143 0.95030 1.01315 0.91607 1.69354 1.04431 1.36774 1.34098 0.85960 0.79740 0.80687 0.78803 1.17897 1.19548 1.19528 1.20292 1.17032 0.92774 1.07194 1.20508 0.96034 0.94070 0.94858 1.21716 0.99343 1.02026 0.95483 1.22144 1.02775 0.95215 1.00791 1.21740 0.93870 1.02841 1.00310 0.92511 0.92577 0.88947 0.86553 0.85058 0.89785 0.86547 0.94196 0.93854 0.90798 0.93120 0.93272 0.90788 0.91446 0.93480 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -6.04 7.48 -39.26 -0.29 -6.33 16 3 C 0.46 9.35 5.99 36.01 0.22 9.57 16 4 O -0.49 -11.60 16.18 -18.75 -0.30 -11.90 16 5 C 0.11 2.25 2.02 -69.08 -0.14 2.11 16 6 H 0.07 1.27 5.31 -51.93 -0.28 0.99 16 7 N -0.64 -15.06 8.21 -51.91 -0.43 -15.49 16 8 C 0.29 6.94 6.58 -82.74 -0.54 6.39 16 9 C -0.31 -6.24 9.34 -37.43 -0.35 -6.59 16 10 C 0.13 2.44 11.15 -16.87 -0.19 2.25 16 11 N -0.60 -12.53 4.83 -10.83 -0.05 -12.58 16 12 H 0.41 8.29 6.65 -40.82 -0.27 8.02 16 13 C 0.34 7.98 6.29 -84.16 -0.53 7.45 16 14 C -0.47 -10.96 9.03 -38.06 -0.34 -11.30 16 15 H 0.10 2.37 7.88 -52.49 -0.41 1.96 16 16 C 0.08 1.65 5.23 -17.29 -0.09 1.56 16 17 N -0.82 -17.61 11.24 55.57 0.62 -16.99 16 18 Si 0.92 16.34 29.58 -169.99 -5.03 11.31 16 19 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 21 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 22 C -0.34 -8.62 9.83 -37.82 -0.37 -8.99 16 23 C -0.05 -0.92 0.62 -154.51 -0.10 -1.02 16 24 C -0.13 -2.24 8.07 37.15 0.30 -1.94 16 25 C -0.15 -2.18 7.95 37.16 0.30 -1.89 16 26 C -0.13 -2.19 8.30 37.16 0.31 -1.88 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.12 2.15 5.98 -52.49 -0.31 1.83 16 31 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.29 5.66 8.29 -40.82 -0.34 5.33 16 33 H 0.12 3.03 8.06 -52.49 -0.42 2.60 16 34 H 0.04 0.71 7.22 -51.93 -0.37 0.33 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.47 7.60 -51.92 -0.39 1.08 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.08 5.32 -51.93 -0.28 0.81 16 40 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 41 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -27.91 342.71 -6.85 -34.76 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.07 Total: 14.87 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.47 Total: -2.82 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.15 Total: -45.06 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.60 Total: -18.23 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -5.03 Total: 11.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.91 -6.85 -34.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163509189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.267 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds